Wall clock time and date at job start Tue Mar 31 2020 09:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99707 * 2 1 4 4 H 1.48499 * 109.47442 * 270.00485 * 3 2 1 5 5 H 1.48500 * 109.47411 * 30.00548 * 3 2 1 6 6 H 1.48504 * 109.47127 * 150.00079 * 3 2 1 7 7 C 1.37873 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99735 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00239 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47296 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47154 * 179.97438 * 10 9 7 12 12 C 1.52990 * 109.47129 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47271 * 180.02562 * 12 11 10 14 14 O 1.21279 * 119.99790 * 359.97438 * 13 12 11 15 15 N 1.34774 * 119.99982 * 180.02562 * 13 12 11 16 16 C 1.45204 * 119.59533 * 179.97438 * 15 13 12 17 17 C 1.51605 * 114.46791 * 248.12658 * 16 15 13 18 18 C 1.53581 * 110.78624 * 292.80914 * 17 16 15 19 19 C 1.51405 * 107.57263 * 81.63533 * 18 17 16 20 20 O 1.33938 * 127.42130 * 114.47287 * 19 18 17 21 21 C 1.34609 * 109.38055 * 181.01219 * 20 19 18 22 22 C 1.34917 * 108.48101 * 359.51084 * 21 20 19 23 23 C 1.34448 * 124.50516 * 294.63505 * 19 18 17 24 24 C 1.47085 * 119.42551 * 359.79690 * 15 13 12 25 25 H 0.96994 * 119.99878 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.46838 * 59.99390 * 9 7 2 27 27 H 1.09002 * 109.46370 * 299.99549 * 9 7 2 28 28 H 1.08994 * 109.47032 * 59.99559 * 10 9 7 29 29 H 1.09000 * 109.46439 * 299.99602 * 10 9 7 30 30 H 1.09000 * 109.46941 * 59.99173 * 11 10 9 31 31 H 1.09003 * 109.46696 * 300.00013 * 11 10 9 32 32 H 1.09000 * 109.47585 * 59.99935 * 12 11 10 33 33 H 1.09003 * 109.47642 * 299.99801 * 12 11 10 34 34 H 1.09002 * 108.46086 * 126.88228 * 16 15 13 35 35 H 1.08997 * 108.45705 * 9.36410 * 16 15 13 36 36 H 1.08998 * 109.21775 * 53.14523 * 17 16 15 37 37 H 1.09001 * 109.21053 * 172.47277 * 17 16 15 38 38 H 1.08999 * 109.83336 * 201.15341 * 18 17 16 39 39 H 1.09000 * 109.83656 * 322.04836 * 18 17 16 40 40 H 1.07998 * 125.75639 * 179.51986 * 21 20 19 41 41 H 1.07994 * 126.81400 * 179.97438 * 22 21 20 42 42 H 1.09002 * 110.04143 * 342.95439 * 24 15 13 43 43 H 1.09002 * 110.04841 * 221.64421 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0217 -2.6365 -0.0023 11 6 5.5517 -2.6364 -0.0035 12 6 6.0617 -4.0788 -0.0040 13 6 7.5687 -4.0788 -0.0046 14 8 8.1750 -3.0285 -0.0051 15 7 8.2426 -5.2460 -0.0057 16 6 9.6946 -5.2357 -0.0068 17 6 10.3251 -5.7448 -1.2881 18 6 10.0547 -7.2456 -1.4697 19 6 8.6659 -7.3924 -2.0546 20 8 8.3376 -7.8683 -3.2627 21 6 7.0013 -7.8161 -3.4154 22 6 6.4614 -7.3100 -2.2873 23 6 7.5317 -7.0497 -1.4190 24 6 7.4944 -6.5123 -0.0017 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6803 0.8887 27 1 3.8745 -0.6800 -0.8912 28 1 3.6580 -3.1497 -0.8924 29 1 3.6587 -3.1508 0.8876 30 1 5.9157 -2.1229 0.8864 31 1 5.9142 -2.1221 -0.8936 32 1 5.6977 -4.5927 -0.8937 33 1 5.6992 -4.5928 0.8862 34 1 10.0448 -5.8542 0.8197 35 1 10.0326 -4.2133 0.1616 36 1 9.9073 -5.2000 -2.1346 37 1 11.4013 -5.5762 -1.2498 38 1 10.7900 -7.6741 -2.1507 39 1 10.1061 -7.7502 -0.5049 40 1 6.4537 -8.1269 -4.2929 41 1 5.4130 -7.1400 -2.0914 42 1 6.4625 -6.3356 0.3019 43 1 7.9655 -7.2225 0.6779 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588937826.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:45 Heat of formation + Delta-G solvation = -38.931144 kcal Electronic energy + Delta-G solvation = -23096.786757 eV Core-core repulsion = 19721.942616 eV Total energy + Delta-G solvation = -3374.844142 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.95937 -40.13494 -37.08174 -35.06727 -34.15694 -33.17125 -32.52798 -30.70977 -29.92519 -26.90412 -26.29312 -25.37960 -22.93530 -21.70084 -21.36901 -20.11497 -20.01036 -18.89047 -17.65631 -17.08996 -16.54412 -16.22947 -16.10312 -15.71829 -14.99828 -14.59987 -14.52084 -14.16979 -13.73064 -13.59714 -13.37650 -13.05702 -12.91015 -12.63274 -12.31444 -12.13299 -12.02163 -11.90815 -11.68581 -11.64219 -11.22601 -11.08267 -10.69721 -10.51372 -10.06442 -9.87875 -9.77515 -9.62418 -9.39294 -9.10010 -8.96075 -8.55260 -8.47805 -5.99141 -3.96456 1.44671 2.23861 2.63141 2.71521 3.00364 3.36695 3.43571 3.49904 4.30605 4.39346 4.51107 4.51632 4.52435 4.61335 4.70901 4.94943 5.03753 5.12790 5.16458 5.23439 5.26712 5.35246 5.37077 5.40847 5.53062 5.60065 5.72674 5.81017 5.81916 5.92697 6.05934 6.16906 6.25278 6.37757 6.47702 6.71079 6.84303 6.88145 7.01403 7.21923 7.40426 7.53272 7.86508 8.17616 8.59965 9.05888 9.64426 11.14413 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023313 B = 0.003125 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.752291 B = 8958.598468 C = 9707.673867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.064 3.936 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.102 4.102 11 C -0.106 4.106 12 C -0.138 4.138 13 C 0.516 3.484 14 O -0.536 6.536 15 N -0.612 5.612 16 C 0.106 3.894 17 C -0.132 4.132 18 C -0.037 4.037 19 C -0.004 4.004 20 O -0.173 6.173 21 C -0.049 4.049 22 C -0.191 4.191 23 C -0.203 4.203 24 C 0.178 3.822 25 H 0.262 0.738 26 H 0.016 0.984 27 H 0.011 0.989 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.203 0.797 41 H 0.154 0.846 42 H 0.100 0.900 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.455 -19.967 -2.557 29.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.139 4.139 11 C -0.144 4.144 12 C -0.178 4.178 13 C 0.306 3.694 14 O -0.412 6.412 15 N -0.346 5.346 16 C -0.017 4.017 17 C -0.170 4.170 18 C -0.074 4.074 19 C -0.055 4.055 20 O -0.069 6.069 21 C -0.116 4.116 22 C -0.210 4.210 23 C -0.206 4.206 24 C 0.055 3.945 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.029 0.971 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.220 0.780 41 H 0.171 0.829 42 H 0.118 0.882 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 21.849 -19.366 -2.741 29.324 hybrid contribution -0.016 0.749 -0.190 0.773 sum 21.833 -18.617 -2.931 28.842 Atomic orbital electron populations 1.69922 1.06305 1.26811 1.51560 1.25039 0.94730 0.99218 0.94626 0.86776 0.80443 0.83555 0.78541 1.20326 1.21463 1.18888 1.21188 0.89680 0.94373 1.50429 0.91112 1.19575 0.96881 0.92521 0.96302 1.21468 0.91699 0.99895 1.00873 1.21490 0.97201 0.92885 1.02832 1.21808 0.90378 1.01611 1.03973 1.21133 0.91023 0.82783 0.74492 1.90677 1.70503 1.30965 1.49045 1.47796 1.06133 1.06144 1.74497 1.20823 0.80283 1.03853 0.96732 1.21787 1.01499 0.94236 0.99528 1.20473 0.88781 0.97593 1.00540 1.22479 0.97279 1.01454 0.84307 1.83969 1.24955 1.64797 1.33189 1.24173 0.79941 1.06214 1.01271 1.21517 1.00345 1.05087 0.94042 1.20566 0.92756 1.08025 0.99227 1.20279 0.98232 0.84653 0.91306 0.92831 0.96610 0.97092 0.92925 0.92846 0.91806 0.91896 0.88992 0.89020 0.91662 0.88798 0.91046 0.89509 0.89796 0.88832 0.78006 0.82876 0.88164 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.56 13.96 55.43 0.77 -27.78 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.54 27.47 -169.99 -4.67 17.87 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 6 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 7 C -0.52 -15.19 9.66 -34.44 -0.33 -15.52 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.02 -0.38 4.04 -27.88 -0.11 -0.50 16 10 C -0.10 -2.03 5.15 -26.73 -0.14 -2.17 16 11 C -0.11 -1.84 4.50 -26.74 -0.12 -1.96 16 12 C -0.14 -1.85 4.06 -27.89 -0.11 -1.96 16 13 C 0.52 7.31 7.66 -10.99 -0.08 7.22 16 14 O -0.54 -9.61 15.24 5.56 0.08 -9.53 16 15 N -0.61 -6.56 2.66 -175.91 -0.47 -7.03 16 16 C 0.11 0.96 5.67 -5.44 -0.03 0.93 16 17 C -0.13 -0.99 5.79 -27.14 -0.16 -1.15 16 18 C -0.04 -0.24 5.89 -27.24 -0.16 -0.41 16 19 C 0.00 -0.04 6.53 -35.30 -0.23 -0.27 16 20 O -0.17 -1.79 10.66 5.84 0.06 -1.73 16 21 C -0.05 -0.43 12.10 29.55 0.36 -0.07 16 22 C -0.19 -1.79 10.92 -40.00 -0.44 -2.23 16 23 C -0.20 -1.96 5.68 -104.74 -0.60 -2.56 16 24 C 0.18 1.50 5.98 -4.42 -0.03 1.48 16 25 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 26 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 27 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 31 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 32 H 0.09 1.13 8.07 -51.93 -0.42 0.71 16 33 H 0.09 1.04 7.47 -51.93 -0.39 0.65 16 34 H 0.07 0.44 8.03 -51.93 -0.42 0.02 16 35 H 0.09 1.03 6.81 -51.93 -0.35 0.67 16 36 H 0.07 0.72 7.89 -51.93 -0.41 0.31 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.47 7.93 -51.93 -0.41 0.06 16 40 H 0.20 1.10 8.06 -52.49 -0.42 0.67 16 41 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.10 0.78 6.02 -51.93 -0.31 0.46 16 43 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 346.15 15.07 5.22 5.22 Total: -1.00 -35.51 346.15 -8.14 -43.65 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -6.86 Total: -3.34 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -2.28 Total: -17.33 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.31 Total: -34.81 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.15 Total: -11.26 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.67 Total: 17.87 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.51 -8.14 -43.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588937826.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.718 kcal (2) G-P(sol) polarization free energy of solvation -35.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds