Wall clock time and date at job start Tue Mar 31 2020 09:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99707 * 2 1 4 4 H 1.48499 * 109.47442 * 270.00485 * 3 2 1 5 5 H 1.48500 * 109.47411 * 30.00548 * 3 2 1 6 6 H 1.48504 * 109.47127 * 150.00079 * 3 2 1 7 7 C 1.37873 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99735 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00239 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47296 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47154 * 179.97438 * 10 9 7 12 12 C 1.52990 * 109.47129 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47271 * 180.02562 * 12 11 10 14 14 O 1.21279 * 119.99790 * 359.97438 * 13 12 11 15 15 N 1.34774 * 119.99982 * 180.02562 * 13 12 11 16 16 C 1.45204 * 119.59533 * 179.97438 * 15 13 12 17 17 C 1.51605 * 114.46791 * 248.12658 * 16 15 13 18 18 C 1.53581 * 110.78624 * 292.80914 * 17 16 15 19 19 C 1.51405 * 107.57263 * 81.63533 * 18 17 16 20 20 O 1.33938 * 127.42130 * 114.47287 * 19 18 17 21 21 C 1.34609 * 109.38055 * 181.01219 * 20 19 18 22 22 C 1.34917 * 108.48101 * 359.51084 * 21 20 19 23 23 C 1.34448 * 124.50516 * 294.63505 * 19 18 17 24 24 C 1.47085 * 119.42551 * 359.79690 * 15 13 12 25 25 H 0.96994 * 119.99878 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.46838 * 59.99390 * 9 7 2 27 27 H 1.09002 * 109.46370 * 299.99549 * 9 7 2 28 28 H 1.08994 * 109.47032 * 59.99559 * 10 9 7 29 29 H 1.09000 * 109.46439 * 299.99602 * 10 9 7 30 30 H 1.09000 * 109.46941 * 59.99173 * 11 10 9 31 31 H 1.09003 * 109.46696 * 300.00013 * 11 10 9 32 32 H 1.09000 * 109.47585 * 59.99935 * 12 11 10 33 33 H 1.09003 * 109.47642 * 299.99801 * 12 11 10 34 34 H 1.09002 * 108.46086 * 126.88228 * 16 15 13 35 35 H 1.08997 * 108.45705 * 9.36410 * 16 15 13 36 36 H 1.08998 * 109.21775 * 53.14523 * 17 16 15 37 37 H 1.09001 * 109.21053 * 172.47277 * 17 16 15 38 38 H 1.08999 * 109.83336 * 201.15341 * 18 17 16 39 39 H 1.09000 * 109.83656 * 322.04836 * 18 17 16 40 40 H 1.07998 * 125.75639 * 179.51986 * 21 20 19 41 41 H 1.07994 * 126.81400 * 179.97438 * 22 21 20 42 42 H 1.09002 * 110.04143 * 342.95439 * 24 15 13 43 43 H 1.09002 * 110.04841 * 221.64421 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0217 -2.6365 -0.0023 11 6 5.5517 -2.6364 -0.0035 12 6 6.0617 -4.0788 -0.0040 13 6 7.5687 -4.0788 -0.0046 14 8 8.1750 -3.0285 -0.0051 15 7 8.2426 -5.2460 -0.0057 16 6 9.6946 -5.2357 -0.0068 17 6 10.3251 -5.7448 -1.2881 18 6 10.0547 -7.2456 -1.4697 19 6 8.6659 -7.3924 -2.0546 20 8 8.3376 -7.8683 -3.2627 21 6 7.0013 -7.8161 -3.4154 22 6 6.4614 -7.3100 -2.2873 23 6 7.5317 -7.0497 -1.4190 24 6 7.4944 -6.5123 -0.0017 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6803 0.8887 27 1 3.8745 -0.6800 -0.8912 28 1 3.6580 -3.1497 -0.8924 29 1 3.6587 -3.1508 0.8876 30 1 5.9157 -2.1229 0.8864 31 1 5.9142 -2.1221 -0.8936 32 1 5.6977 -4.5927 -0.8937 33 1 5.6992 -4.5928 0.8862 34 1 10.0448 -5.8542 0.8197 35 1 10.0326 -4.2133 0.1616 36 1 9.9073 -5.2000 -2.1346 37 1 11.4013 -5.5762 -1.2498 38 1 10.7900 -7.6741 -2.1507 39 1 10.1061 -7.7502 -0.5049 40 1 6.4537 -8.1269 -4.2929 41 1 5.4130 -7.1400 -2.0914 42 1 6.4625 -6.3356 0.3019 43 1 7.9655 -7.2225 0.6779 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588937826.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:42 Heat of formation + Delta-G solvation = -60.443569 kcal Electronic energy + Delta-G solvation = -23097.719606 eV Core-core repulsion = 19721.942616 eV Total energy + Delta-G solvation = -3375.776990 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -43.62874 -41.11764 -37.96878 -36.67757 -34.97902 -34.47038 -33.93419 -31.98464 -31.02974 -28.17764 -27.09911 -26.46050 -24.19562 -22.68315 -22.31040 -21.70416 -20.82811 -19.77915 -18.86993 -18.32521 -18.00030 -17.00614 -16.94288 -16.81541 -16.30936 -15.74948 -15.59175 -15.35308 -14.81224 -14.57787 -14.46983 -14.25393 -13.76944 -13.69514 -13.68541 -13.53558 -13.44952 -12.87206 -12.73951 -12.54673 -12.29868 -12.24487 -12.09569 -11.90994 -11.75668 -11.46190 -11.36229 -11.26625 -10.85319 -10.76327 -10.63325 -9.80448 -9.22080 -8.29998 -6.32970 0.78063 1.34479 1.35806 1.48809 1.49840 1.63836 2.10205 2.18914 2.35689 3.05437 3.55060 3.74246 3.84872 3.92343 3.97570 3.99270 4.02596 4.12243 4.37612 4.40962 4.49210 4.55018 4.61426 4.66300 4.72724 4.76614 4.81457 4.85083 4.91160 4.95880 5.10025 5.12230 5.18589 5.19391 5.25587 5.31623 5.57690 5.60155 5.64668 5.66159 5.68511 6.19630 6.29094 6.31804 6.74841 7.16281 7.31918 8.86637 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023313 B = 0.003125 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.752291 B = 8958.598468 C = 9707.673867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.252 1.252 7 C -0.530 4.530 8 H 0.038 0.962 9 C -0.016 4.016 10 C -0.092 4.092 11 C -0.096 4.096 12 C -0.130 4.130 13 C 0.511 3.489 14 O -0.584 6.584 15 N -0.603 5.603 16 C 0.100 3.900 17 C -0.123 4.123 18 C -0.033 4.033 19 C -0.018 4.018 20 O -0.189 6.189 21 C -0.056 4.056 22 C -0.209 4.209 23 C -0.218 4.218 24 C 0.175 3.825 25 H 0.266 0.734 26 H 0.015 0.985 27 H 0.011 0.989 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.039 0.961 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.117 0.883 40 H 0.229 0.771 41 H 0.162 0.838 42 H 0.108 0.892 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.379 -21.152 -2.155 31.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.176 1.176 7 C -0.568 4.568 8 H 0.056 0.944 9 C -0.054 4.054 10 C -0.130 4.130 11 C -0.134 4.134 12 C -0.170 4.170 13 C 0.301 3.699 14 O -0.464 6.464 15 N -0.335 5.335 16 C -0.023 4.023 17 C -0.162 4.162 18 C -0.070 4.070 19 C -0.069 4.069 20 O -0.086 6.086 21 C -0.122 4.122 22 C -0.228 4.228 23 C -0.220 4.220 24 C 0.054 3.946 25 H 0.075 0.925 26 H 0.033 0.967 27 H 0.029 0.971 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.123 0.877 33 H 0.136 0.864 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.129 0.871 38 H 0.115 0.885 39 H 0.136 0.864 40 H 0.245 0.755 41 H 0.180 0.820 42 H 0.126 0.874 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 23.788 -20.608 -2.340 31.560 hybrid contribution -0.665 1.008 -0.344 1.256 sum 23.122 -19.601 -2.684 30.431 Atomic orbital electron populations 1.70057 1.08097 1.28090 1.52900 1.25976 0.95607 1.03345 0.94281 0.85708 0.79420 0.78696 0.79153 1.19311 1.20623 1.17616 1.21538 0.92053 0.93253 1.49955 0.94388 1.19569 0.93947 0.95821 0.96043 1.21326 0.93524 0.96791 1.01337 1.21277 0.94971 0.95537 1.01627 1.21704 0.90253 0.99121 1.05909 1.21204 0.91237 0.83138 0.74272 1.90659 1.71297 1.32785 1.51683 1.47843 1.07028 1.05961 1.72656 1.21025 0.79261 1.03297 0.98694 1.21723 1.02589 0.94545 0.97331 1.20601 0.87613 0.96872 1.01871 1.23065 0.98580 1.01162 0.84087 1.83970 1.25685 1.65150 1.33758 1.24765 0.79638 1.05691 1.02114 1.21793 1.00959 1.05615 0.94465 1.20774 0.92969 1.08407 0.99841 1.20544 0.98841 0.83884 0.91361 0.92494 0.96704 0.97109 0.92651 0.92202 0.92776 0.93432 0.87671 0.86374 0.88453 0.91168 0.94202 0.87093 0.88528 0.86447 0.75474 0.82031 0.87354 0.86705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.83 13.96 21.45 0.30 -60.53 16 2 C 0.00 0.28 5.47 84.65 0.46 0.74 16 3 Si 0.95 46.34 27.47 68.60 1.88 48.22 16 4 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.25 -11.77 6.54 99.48 0.65 -11.12 16 7 C -0.53 -31.48 9.66 25.60 0.25 -31.23 16 8 H 0.04 2.43 7.99 -2.91 -0.02 2.41 16 9 C -0.02 -0.81 4.04 29.85 0.12 -0.69 16 10 C -0.09 -3.61 5.15 30.59 0.16 -3.46 16 11 C -0.10 -3.25 4.50 30.59 0.14 -3.11 16 12 C -0.13 -3.27 4.06 29.85 0.12 -3.15 16 13 C 0.51 13.97 7.66 87.66 0.67 14.65 16 14 O -0.58 -21.08 15.24 -3.03 -0.05 -21.13 16 15 N -0.60 -11.78 2.66 -828.85 -2.20 -13.99 16 16 C 0.10 1.60 5.67 86.16 0.49 2.09 16 17 C -0.12 -1.63 5.79 30.33 0.18 -1.45 16 18 C -0.03 -0.35 5.89 30.27 0.18 -0.17 16 19 C -0.02 -0.31 6.53 25.04 0.16 -0.14 16 20 O -0.19 -3.68 10.66 -2.02 -0.02 -3.70 16 21 C -0.06 -0.91 12.10 67.06 0.81 -0.10 16 22 C -0.21 -3.63 10.92 22.00 0.24 -3.39 16 23 C -0.22 -3.77 5.68 -19.94 -0.11 -3.89 16 24 C 0.18 2.47 5.98 85.82 0.51 2.98 16 25 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 26 H 0.01 0.72 7.20 -2.39 -0.02 0.71 16 27 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 28 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.05 1.93 8.10 -2.39 -0.02 1.91 16 31 H 0.05 1.74 8.10 -2.39 -0.02 1.72 16 32 H 0.11 2.38 8.07 -2.39 -0.02 2.36 16 33 H 0.12 2.34 7.47 -2.39 -0.02 2.32 16 34 H 0.10 0.96 8.03 -2.39 -0.02 0.94 16 35 H 0.07 1.50 6.81 -2.39 -0.02 1.48 16 36 H 0.04 0.78 7.89 -2.39 -0.02 0.77 16 37 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.10 0.79 8.14 -2.39 -0.02 0.78 16 39 H 0.12 0.69 7.93 -2.39 -0.02 0.67 16 40 H 0.23 2.11 8.06 -2.91 -0.02 2.09 16 41 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 42 H 0.11 1.35 6.02 -2.39 -0.01 1.33 16 43 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -78.66 346.15 5.22 -73.44 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 0.93 Total: 8.00 kcal Atomic # 6 Polarization: -34.70 SS G_CDS: 4.38 Total: -30.32 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: -1.90 Total: -74.52 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.07 Total: -24.83 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 1.88 Total: 48.22 kcal Total: -78.66 5.22 -73.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588937826.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.996 kcal (2) G-P(sol) polarization free energy of solvation -78.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds