Wall clock time and date at job start Tue Mar 31 2020 07:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99966 * 2 1 4 4 H 1.48503 * 109.47016 * 269.99986 * 3 2 1 5 5 H 1.48503 * 109.47100 * 30.00036 * 3 2 1 6 6 H 1.48497 * 109.47081 * 150.00237 * 3 2 1 7 7 C 1.37875 * 119.99718 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99789 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00356 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47313 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47310 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00146 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00152 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99805 * 0.02562 * 13 11 10 15 15 C 1.52992 * 109.46780 * 269.99277 * 14 13 11 16 16 O 1.42904 * 109.47350 * 65.00660 * 15 14 13 17 17 C 1.46496 * 119.99885 * 180.02562 * 13 11 10 18 18 C 1.52995 * 109.47070 * 90.00634 * 17 13 11 19 19 C 1.50707 * 109.47301 * 179.97438 * 18 17 13 20 20 C 1.38238 * 119.99792 * 90.00016 * 19 18 17 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97953 * 19 18 17 25 25 H 0.97005 * 119.99977 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47165 * 60.00267 * 9 7 2 27 27 H 1.09005 * 109.46895 * 300.00333 * 9 7 2 28 28 H 1.08999 * 109.47056 * 59.99870 * 10 9 7 29 29 H 1.09001 * 109.46706 * 299.99682 * 10 9 7 30 30 H 1.09003 * 109.47109 * 29.99830 * 14 13 11 31 31 H 1.09008 * 109.46723 * 149.99386 * 14 13 11 32 32 H 1.09010 * 109.46898 * 184.99891 * 15 14 13 33 33 H 1.08997 * 109.47476 * 304.99772 * 15 14 13 34 34 H 0.96698 * 114.00148 * 179.97438 * 16 15 14 35 35 H 1.08995 * 109.47623 * 330.00403 * 17 13 11 36 36 H 1.09004 * 109.47046 * 210.00410 * 17 13 11 37 37 H 1.09005 * 109.47610 * 60.00011 * 18 17 13 38 38 H 1.09000 * 109.47256 * 299.99352 * 18 17 13 39 39 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 40 40 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 43 43 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4917 -4.9672 0.0001 12 8 0.2789 -4.9672 0.0000 13 7 2.1656 -6.1344 -0.0003 14 6 3.6306 -6.1344 -0.0008 15 6 4.1400 -6.1343 -1.4434 16 8 3.7619 -4.9132 -2.0822 17 6 1.4331 -7.4031 -0.0003 18 6 1.1777 -7.8445 -1.4427 19 6 0.4247 -9.1500 -1.4427 20 6 -0.9577 -9.1505 -1.4422 21 6 -1.6484 -10.3479 -1.4428 22 6 -0.9568 -11.5448 -1.4444 23 6 0.4256 -11.5443 -1.4395 24 6 1.1163 -10.3469 -1.4436 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5570 0.8897 28 1 2.8719 -3.6043 0.8894 29 1 2.8718 -3.6043 -0.8906 30 1 3.9941 -5.2444 0.5130 31 1 3.9941 -7.0244 0.5129 32 1 5.2264 -6.2238 -1.4451 33 1 3.7053 -6.9761 -1.9824 34 1 4.0527 -4.8438 -3.0017 35 1 0.4808 -7.2728 0.5138 36 1 2.0223 -8.1628 0.5133 37 1 2.1300 -7.9749 -1.9569 38 1 0.5884 -7.0849 -1.9563 39 1 -1.4980 -8.2153 -1.4414 40 1 -2.7284 -10.3483 -1.4420 41 1 -1.4965 -12.4803 -1.4452 42 1 0.9659 -12.4794 -1.4363 43 1 2.1963 -10.3465 -1.4448 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589703122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:47 Heat of formation + Delta-G solvation = -72.938014 kcal Electronic energy + Delta-G solvation = -23046.809037 eV Core-core repulsion = 19670.490247 eV Total energy + Delta-G solvation = -3376.318790 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.80145 -39.09689 -36.91698 -35.31847 -33.43174 -33.10258 -31.01201 -30.83393 -29.54247 -28.12014 -25.66643 -23.63859 -22.89098 -22.68328 -21.28142 -20.78539 -18.40428 -17.60291 -16.93412 -16.83807 -15.81927 -15.76807 -15.28192 -15.20138 -15.02927 -14.34641 -14.29345 -13.62108 -13.46661 -13.30556 -13.20102 -13.16106 -12.75682 -12.40490 -12.10330 -12.06393 -11.79875 -11.41771 -11.30141 -11.14156 -10.96181 -10.83337 -10.80917 -10.49833 -9.91721 -9.70087 -9.43661 -9.05518 -9.04479 -8.95075 -8.81143 -8.32038 -8.20674 -5.86671 -3.89720 1.21588 1.27175 3.28648 3.38533 3.42822 3.44510 3.47546 3.67809 4.24481 4.54576 4.69351 4.73099 4.86286 4.95800 5.01290 5.06859 5.08219 5.27903 5.31305 5.38708 5.40936 5.44331 5.48065 5.56875 5.62813 5.81335 5.85025 5.92376 6.05511 6.17452 6.32148 6.38748 6.43339 6.56533 6.72636 6.85874 6.89874 7.17893 7.71867 7.84865 7.86723 8.02744 8.19891 8.51917 8.91066 9.19416 9.72744 11.24526 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024559 B = 0.003243 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.843006 B = 8631.748094 C = 9422.606766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.039 3.961 10 C -0.134 4.134 11 C 0.522 3.478 12 O -0.538 6.538 13 N -0.624 5.624 14 C 0.111 3.889 15 C 0.054 3.946 16 O -0.554 6.554 17 C 0.123 3.877 18 C -0.097 4.097 19 C -0.075 4.075 20 C -0.112 4.112 21 C -0.118 4.118 22 C -0.129 4.129 23 C -0.122 4.122 24 C -0.119 4.119 25 H 0.259 0.741 26 H 0.021 0.979 27 H 0.018 0.982 28 H 0.069 0.931 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.374 0.626 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.126 0.874 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.000 -23.625 -3.698 24.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.558 4.558 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.173 4.173 11 C 0.313 3.687 12 O -0.413 6.413 13 N -0.358 5.358 14 C -0.013 4.013 15 C -0.025 4.025 16 O -0.359 6.359 17 C 0.000 4.000 18 C -0.136 4.136 19 C -0.076 4.076 20 C -0.130 4.130 21 C -0.136 4.136 22 C -0.147 4.147 23 C -0.140 4.140 24 C -0.137 4.137 25 H 0.069 0.931 26 H 0.039 0.961 27 H 0.036 0.964 28 H 0.087 0.913 29 H 0.127 0.873 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.221 0.779 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.144 0.856 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.913 -23.360 -3.079 24.293 hybrid contribution 0.793 0.613 -0.620 1.178 sum 6.707 -22.747 -3.699 24.002 Atomic orbital electron populations 1.70008 1.06020 1.26350 1.50716 1.25027 0.94801 0.99109 0.95573 0.86618 0.79775 0.83711 0.77987 1.20748 1.21327 1.19953 1.21242 0.92901 0.91057 1.50603 0.92693 1.18876 0.93230 0.89654 0.98141 1.22055 1.00772 0.91280 1.03243 1.21607 0.88199 0.85581 0.73311 1.90639 1.14585 1.87324 1.48751 1.48104 1.05881 1.05919 1.75943 1.21626 0.80727 1.03739 0.95206 1.22747 0.97715 0.87403 0.94634 1.86663 1.81303 1.38016 1.29945 1.21313 0.98205 0.85149 0.95363 1.21089 0.99948 0.93932 0.98582 1.19902 0.93909 0.94839 0.98928 1.21222 0.93911 0.98506 0.99368 1.21180 0.99957 0.92511 0.99966 1.21127 0.94453 0.97963 1.01125 1.21106 0.94439 0.97825 1.00626 1.21035 0.99654 0.92007 1.01051 0.93109 0.96071 0.96367 0.91289 0.87318 0.89006 0.89622 0.93207 0.93673 0.77872 0.89913 0.91271 0.91111 0.90217 0.85647 0.86110 0.86365 0.86311 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.24 13.29 55.43 0.74 -27.50 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 22.21 29.54 -169.99 -5.02 17.18 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.52 -15.29 9.11 -34.44 -0.31 -15.60 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.04 1.09 4.26 -27.88 -0.12 0.97 16 10 C -0.13 -2.95 4.12 -27.88 -0.11 -3.07 16 11 C 0.52 10.76 7.37 -10.99 -0.08 10.68 16 12 O -0.54 -13.25 15.56 5.55 0.09 -13.16 16 13 N -0.62 -9.39 2.46 -173.69 -0.43 -9.81 16 14 C 0.11 1.25 5.82 -4.04 -0.02 1.22 16 15 C 0.05 0.53 7.39 37.15 0.27 0.81 16 16 O -0.55 -7.09 10.38 -35.23 -0.37 -7.46 16 17 C 0.12 1.61 5.43 -4.05 -0.02 1.59 16 18 C -0.10 -1.18 5.64 -27.88 -0.16 -1.34 16 19 C -0.08 -0.86 5.13 -104.62 -0.54 -1.39 16 20 C -0.11 -1.33 9.70 -39.58 -0.38 -1.71 16 21 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 22 C -0.13 -1.18 10.05 -39.58 -0.40 -1.58 16 23 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 24 C -0.12 -1.16 9.70 -39.58 -0.38 -1.54 16 25 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 26 H 0.02 0.65 8.10 -51.93 -0.42 0.23 16 27 H 0.02 0.56 8.10 -51.93 -0.42 0.14 16 28 H 0.07 1.42 7.40 -51.93 -0.38 1.03 16 29 H 0.11 2.30 5.12 -51.93 -0.27 2.03 16 30 H 0.09 1.12 6.44 -51.93 -0.33 0.78 16 31 H 0.09 0.68 7.89 -51.92 -0.41 0.27 16 32 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 33 H 0.05 0.41 6.11 -51.93 -0.32 0.09 16 34 H 0.37 3.22 9.12 45.56 0.42 3.64 16 35 H 0.08 1.28 7.42 -51.93 -0.39 0.90 16 36 H 0.07 0.72 7.89 -51.93 -0.41 0.31 16 37 H 0.07 0.75 6.08 -51.93 -0.32 0.43 16 38 H 0.08 1.19 8.09 -51.93 -0.42 0.77 16 39 H 0.13 1.55 8.06 -52.48 -0.42 1.12 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 42 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 354.08 15.07 5.34 5.34 Total: -1.00 -36.70 354.08 -8.55 -45.25 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -5.75 Total: 2.65 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -3.15 Total: -12.49 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.31 Total: -37.31 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.28 Total: -20.62 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.70 -8.55 -45.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589703122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.683 kcal (2) G-P(sol) polarization free energy of solvation -36.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds