Wall clock time and date at job start Tue Mar 31 2020 07:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99966 * 2 1 4 4 H 1.48503 * 109.47016 * 269.99986 * 3 2 1 5 5 H 1.48503 * 109.47100 * 30.00036 * 3 2 1 6 6 H 1.48497 * 109.47081 * 150.00237 * 3 2 1 7 7 C 1.37875 * 119.99718 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99789 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00356 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47313 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47310 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00146 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00152 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99805 * 0.02562 * 13 11 10 15 15 C 1.52992 * 109.46780 * 269.99277 * 14 13 11 16 16 O 1.42904 * 109.47350 * 65.00660 * 15 14 13 17 17 C 1.46496 * 119.99885 * 180.02562 * 13 11 10 18 18 C 1.52995 * 109.47070 * 90.00634 * 17 13 11 19 19 C 1.50707 * 109.47301 * 179.97438 * 18 17 13 20 20 C 1.38238 * 119.99792 * 90.00016 * 19 18 17 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97953 * 19 18 17 25 25 H 0.97005 * 119.99977 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47165 * 60.00267 * 9 7 2 27 27 H 1.09005 * 109.46895 * 300.00333 * 9 7 2 28 28 H 1.08999 * 109.47056 * 59.99870 * 10 9 7 29 29 H 1.09001 * 109.46706 * 299.99682 * 10 9 7 30 30 H 1.09003 * 109.47109 * 29.99830 * 14 13 11 31 31 H 1.09008 * 109.46723 * 149.99386 * 14 13 11 32 32 H 1.09010 * 109.46898 * 184.99891 * 15 14 13 33 33 H 1.08997 * 109.47476 * 304.99772 * 15 14 13 34 34 H 0.96698 * 114.00148 * 179.97438 * 16 15 14 35 35 H 1.08995 * 109.47623 * 330.00403 * 17 13 11 36 36 H 1.09004 * 109.47046 * 210.00410 * 17 13 11 37 37 H 1.09005 * 109.47610 * 60.00011 * 18 17 13 38 38 H 1.09000 * 109.47256 * 299.99352 * 18 17 13 39 39 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 40 40 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 43 43 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4917 -4.9672 0.0001 12 8 0.2789 -4.9672 0.0000 13 7 2.1656 -6.1344 -0.0003 14 6 3.6306 -6.1344 -0.0008 15 6 4.1400 -6.1343 -1.4434 16 8 3.7619 -4.9132 -2.0822 17 6 1.4331 -7.4031 -0.0003 18 6 1.1777 -7.8445 -1.4427 19 6 0.4247 -9.1500 -1.4427 20 6 -0.9577 -9.1505 -1.4422 21 6 -1.6484 -10.3479 -1.4428 22 6 -0.9568 -11.5448 -1.4444 23 6 0.4256 -11.5443 -1.4395 24 6 1.1163 -10.3469 -1.4436 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5570 0.8897 28 1 2.8719 -3.6043 0.8894 29 1 2.8718 -3.6043 -0.8906 30 1 3.9941 -5.2444 0.5130 31 1 3.9941 -7.0244 0.5129 32 1 5.2264 -6.2238 -1.4451 33 1 3.7053 -6.9761 -1.9824 34 1 4.0527 -4.8438 -3.0017 35 1 0.4808 -7.2728 0.5138 36 1 2.0223 -8.1628 0.5133 37 1 2.1300 -7.9749 -1.9569 38 1 0.5884 -7.0849 -1.9563 39 1 -1.4980 -8.2153 -1.4414 40 1 -2.7284 -10.3483 -1.4420 41 1 -1.4965 -12.4803 -1.4452 42 1 0.9659 -12.4794 -1.4363 43 1 2.1963 -10.3465 -1.4448 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589703122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:39 Heat of formation + Delta-G solvation = -98.172735 kcal Electronic energy + Delta-G solvation = -23047.903297 eV Core-core repulsion = 19670.490247 eV Total energy + Delta-G solvation = -3377.413050 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 4.97 seconds Orbital eigenvalues (eV) -41.09240 -40.05284 -38.02941 -36.51339 -35.52583 -34.22666 -32.83351 -31.76633 -30.50088 -29.31558 -27.54609 -25.02980 -23.86912 -23.44942 -22.97601 -21.80910 -19.84720 -18.88104 -18.40127 -17.73149 -17.54360 -16.99286 -16.61996 -16.40618 -16.10622 -15.92049 -15.35483 -14.76733 -14.66899 -14.47308 -14.25867 -14.20320 -14.02056 -13.88183 -13.65149 -13.25187 -13.13232 -12.89946 -12.77050 -12.48761 -12.34696 -12.16482 -11.95071 -11.76713 -11.71963 -11.47041 -11.28821 -10.71596 -10.58517 -10.55473 -9.88373 -9.81903 -9.42671 -8.16651 -6.30825 0.42939 0.50231 1.40884 1.44874 1.55823 1.76985 2.10400 2.43960 2.88657 3.15461 3.47413 3.77567 3.88134 3.95174 4.15058 4.19061 4.22102 4.29061 4.31726 4.39816 4.45721 4.55267 4.60649 4.64782 4.67094 4.70544 4.76775 4.92146 5.01504 5.07393 5.18840 5.21661 5.26566 5.51148 5.57088 5.63129 5.69359 5.71689 5.74204 5.88129 6.13634 6.20985 6.43410 6.87174 7.04658 7.34530 7.39335 8.96441 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024559 B = 0.003243 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.843006 B = 8631.748094 C = 9422.606766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.009 4.009 3 Si 0.977 3.023 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.539 4.539 8 H 0.073 0.927 9 C 0.047 3.953 10 C -0.120 4.120 11 C 0.517 3.483 12 O -0.595 6.595 13 N -0.608 5.608 14 C 0.096 3.904 15 C 0.054 3.946 16 O -0.591 6.591 17 C 0.123 3.877 18 C -0.084 4.084 19 C -0.090 4.090 20 C -0.141 4.141 21 C -0.129 4.129 22 C -0.130 4.130 23 C -0.121 4.121 24 C -0.117 4.117 25 H 0.262 0.738 26 H -0.025 1.025 27 H -0.026 1.026 28 H 0.087 0.913 29 H 0.123 0.877 30 H 0.083 0.917 31 H 0.132 0.868 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.390 0.610 35 H 0.048 0.952 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.037 0.963 39 H 0.100 0.900 40 H 0.130 0.870 41 H 0.144 0.856 42 H 0.150 0.850 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.818 -25.794 -3.817 28.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.800 3.200 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.576 4.576 8 H 0.091 0.909 9 C 0.010 3.990 10 C -0.159 4.159 11 C 0.308 3.692 12 O -0.476 6.476 13 N -0.340 5.340 14 C -0.025 4.025 15 C -0.024 4.024 16 O -0.400 6.400 17 C 0.001 3.999 18 C -0.122 4.122 19 C -0.091 4.091 20 C -0.159 4.159 21 C -0.147 4.147 22 C -0.147 4.147 23 C -0.138 4.138 24 C -0.134 4.134 25 H 0.071 0.929 26 H -0.006 1.006 27 H -0.007 1.007 28 H 0.106 0.894 29 H 0.141 0.859 30 H 0.101 0.899 31 H 0.150 0.850 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.240 0.760 35 H 0.067 0.933 36 H 0.130 0.870 37 H 0.113 0.887 38 H 0.056 0.944 39 H 0.118 0.882 40 H 0.148 0.852 41 H 0.161 0.839 42 H 0.168 0.832 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 9.803 -25.584 -3.212 27.586 hybrid contribution -0.408 1.158 -0.593 1.363 sum 9.395 -24.427 -3.805 26.446 Atomic orbital electron populations 1.70199 1.08394 1.27755 1.51653 1.26187 0.95761 1.04045 0.94631 0.85285 0.78643 0.77477 0.78607 1.19556 1.21040 1.17840 1.21677 0.93832 0.91577 1.50559 0.90868 1.18653 0.93599 0.92909 0.93889 1.21783 0.99273 0.90038 1.04806 1.21329 0.87375 0.87002 0.73469 1.90618 1.16892 1.88267 1.51825 1.48003 1.07830 1.04761 1.73424 1.22131 0.77622 1.05660 0.97119 1.22865 0.99781 0.86598 0.93160 1.86554 1.82140 1.39780 1.31532 1.21470 0.97320 0.84837 0.96299 1.20905 1.00459 0.93366 0.97466 1.19879 0.93562 0.95253 1.00407 1.21235 0.94778 0.98394 1.01488 1.21368 1.00708 0.92521 1.00123 1.21486 0.95110 0.98261 0.99878 1.21522 0.94435 0.98837 0.99045 1.21314 1.01039 0.91187 0.99905 0.92888 1.00622 1.00713 0.89443 0.85891 0.89863 0.85031 0.89663 0.92546 0.75973 0.93314 0.86956 0.88652 0.94393 0.88160 0.85184 0.83851 0.83212 0.83516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.02 13.29 21.45 0.28 -61.74 16 2 C -0.01 -0.56 5.46 84.65 0.46 -0.10 16 3 Si 0.98 45.87 29.54 68.60 2.03 47.90 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 6 H -0.25 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.54 -32.47 9.11 25.60 0.23 -32.23 16 8 H 0.07 4.05 7.74 -2.91 -0.02 4.03 16 9 C 0.05 2.84 4.26 29.85 0.13 2.97 16 10 C -0.12 -5.45 4.12 29.85 0.12 -5.33 16 11 C 0.52 22.40 7.37 87.66 0.65 23.05 16 12 O -0.60 -32.02 15.56 -3.04 -0.05 -32.07 16 13 N -0.61 -18.00 2.46 -821.83 -2.02 -20.02 16 14 C 0.10 1.87 5.82 86.38 0.50 2.37 16 15 C 0.05 0.88 7.39 71.98 0.53 1.41 16 16 O -0.59 -14.23 10.38 -148.98 -1.55 -15.78 16 17 C 0.12 3.17 5.43 86.38 0.47 3.64 16 18 C -0.08 -2.03 5.64 29.85 0.17 -1.86 16 19 C -0.09 -2.03 5.13 -19.86 -0.10 -2.13 16 20 C -0.14 -3.56 9.70 22.27 0.22 -3.34 16 21 C -0.13 -2.66 10.05 22.27 0.22 -2.43 16 22 C -0.13 -2.09 10.05 22.27 0.22 -1.87 16 23 C -0.12 -1.75 10.05 22.27 0.22 -1.52 16 24 C -0.12 -1.91 9.70 22.27 0.22 -1.69 16 25 H 0.26 16.13 8.31 -92.70 -0.77 15.36 16 26 H -0.02 -1.68 8.10 -2.39 -0.02 -1.70 16 27 H -0.03 -1.73 8.10 -2.38 -0.02 -1.75 16 28 H 0.09 3.60 7.40 -2.39 -0.02 3.58 16 29 H 0.12 5.26 5.12 -2.39 -0.01 5.24 16 30 H 0.08 1.80 6.44 -2.39 -0.02 1.79 16 31 H 0.13 1.39 7.89 -2.38 -0.02 1.37 16 32 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.06 0.80 6.11 -2.39 -0.01 0.78 16 34 H 0.39 6.14 9.12 -74.06 -0.68 5.47 16 35 H 0.05 1.61 7.42 -2.39 -0.02 1.59 16 36 H 0.11 1.95 7.89 -2.38 -0.02 1.93 16 37 H 0.10 1.79 6.08 -2.38 -0.01 1.78 16 38 H 0.04 1.23 8.09 -2.39 -0.02 1.21 16 39 H 0.10 2.91 8.06 -2.91 -0.02 2.88 16 40 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 41 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 42 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 43 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -87.44 354.08 3.29 -84.14 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.33 Total: 16.64 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: 4.27 Total: -19.07 kcal Atomic # 7 Polarization: -80.02 SS G_CDS: -1.73 Total: -81.75 kcal Atomic # 8 Polarization: -46.26 SS G_CDS: -1.59 Total: -47.85 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -87.44 3.29 -84.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589703122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.028 kcal (2) G-P(sol) polarization free energy of solvation -87.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.97 seconds