Wall clock time and date at job start Tue Mar 31 2020 07:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00127 * 2 1 4 4 H 1.48499 * 109.47139 * 240.00231 * 3 2 1 5 5 H 1.48498 * 109.47064 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46805 * 119.99851 * 3 2 1 7 7 C 1.37882 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99945 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00025 * 359.97438 * 7 2 1 10 10 O 1.42905 * 109.47316 * 180.02562 * 9 7 2 11 11 C 1.42898 * 114.00232 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47019 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47480 * 64.99621 * 12 11 10 14 14 C 1.45377 * 110.99874 * 66.04436 * 13 12 11 15 15 C 1.53185 * 110.83086 * 161.75483 * 14 13 12 16 16 C 1.51493 * 108.29251 * 84.85165 * 15 14 13 17 17 C 1.38316 * 119.75660 * 110.64539 * 16 15 14 18 18 C 1.38221 * 119.69205 * 180.02562 * 17 16 15 19 19 C 1.38752 * 120.00770 * 359.97438 * 18 17 16 20 20 O 1.35903 * 120.02142 * 179.97438 * 19 18 17 21 21 C 1.38804 * 119.96254 * 359.97438 * 19 18 17 22 22 C 1.37356 * 119.83529 * 290.59661 * 16 15 14 23 23 C 1.51468 * 119.88360 * 359.92212 * 22 16 15 24 24 C 1.45362 * 110.99456 * 294.56844 * 13 12 11 25 25 H 0.97000 * 120.00174 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.46849 * 60.00709 * 9 7 2 27 27 H 1.08999 * 109.47256 * 300.00507 * 9 7 2 28 28 H 1.08997 * 109.47298 * 59.99990 * 11 10 9 29 29 H 1.08997 * 109.46655 * 299.99942 * 11 10 9 30 30 H 1.09005 * 109.47032 * 304.99515 * 12 11 10 31 31 H 1.08995 * 109.46733 * 184.99630 * 12 11 10 32 32 H 1.09002 * 109.19811 * 41.42072 * 14 13 12 33 33 H 1.08998 * 109.20095 * 282.08981 * 14 13 12 34 34 H 1.09001 * 109.70234 * 204.55107 * 15 14 13 35 35 H 1.09001 * 109.70038 * 325.11299 * 15 14 13 36 36 H 1.08005 * 120.15526 * 0.04025 * 17 16 15 37 37 H 1.07995 * 119.99637 * 179.97438 * 18 17 16 38 38 H 0.96700 * 114.00161 * 89.99279 * 20 19 18 39 39 H 1.07995 * 120.21509 * 179.97438 * 21 19 18 40 40 H 1.08995 * 109.70138 * 189.17018 * 23 22 16 41 41 H 1.08999 * 109.70185 * 309.76759 * 23 22 16 42 42 H 1.08997 * 109.18543 * 77.84119 * 24 13 12 43 43 H 1.08997 * 109.17542 * 318.52740 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5854 -0.0005 11 6 1.5650 -4.8755 -0.0011 12 6 2.6480 -5.9562 -0.0004 13 7 3.4072 -5.8880 1.2553 14 6 2.5690 -6.2375 2.3905 15 6 3.4247 -6.6057 3.6065 16 6 3.7925 -5.3285 4.3334 17 6 3.2458 -5.0640 5.5761 18 6 3.5819 -3.8980 6.2379 19 6 4.4644 -2.9994 5.6557 20 8 4.7946 -1.8526 6.3059 21 6 5.0098 -3.2723 4.4089 22 6 4.6672 -4.4409 3.7555 23 6 5.2612 -4.7439 2.3955 24 6 4.1464 -4.6399 1.3497 25 1 -0.4850 0.8400 -0.0004 26 1 0.6240 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8896 28 1 0.9452 -4.9823 -0.8913 29 1 0.9446 -4.9827 0.8886 30 1 3.3221 -5.7956 -0.8418 31 1 2.1820 -6.9375 -0.0904 32 1 1.9406 -7.0873 2.1239 33 1 1.9346 -5.3879 2.6427 34 1 2.8573 -7.2566 4.2717 35 1 4.3302 -7.1158 3.2778 36 1 2.5595 -5.7654 6.0273 37 1 3.1575 -3.6863 7.2081 38 1 5.5675 -1.9352 6.8812 39 1 5.6968 -2.5756 3.9518 40 1 6.0463 -4.0227 2.1685 41 1 5.6754 -5.7521 2.3918 42 1 3.4630 -3.8394 1.6327 43 1 4.5857 -4.4097 0.3792 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590165252.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:21 Heat of formation + Delta-G solvation = -67.684606 kcal Electronic energy + Delta-G solvation = -23970.968127 eV Core-core repulsion = 20594.877142 eV Total energy + Delta-G solvation = -3376.090985 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.21832 -38.47244 -37.00489 -35.69561 -33.01191 -32.78142 -32.15883 -29.50518 -28.83858 -27.05201 -25.73215 -24.10362 -22.73132 -22.32582 -21.97505 -20.38504 -19.86978 -17.89353 -16.44397 -16.28659 -15.95875 -15.65746 -15.37212 -15.02091 -14.85116 -14.62462 -14.22392 -13.78629 -13.66184 -13.34505 -12.88285 -12.81850 -12.58264 -12.16259 -12.05997 -11.63503 -11.46756 -11.32257 -11.20551 -10.97822 -10.89144 -10.80544 -10.71773 -10.66044 -10.51877 -10.13498 -10.09290 -9.12654 -8.82929 -8.67080 -8.27869 -8.19770 -7.71149 -6.10519 -4.12383 1.35502 1.46390 3.32838 3.35552 3.39262 3.71056 4.14959 4.25923 4.35878 4.77189 4.85349 4.90390 5.06066 5.26248 5.28704 5.34399 5.36385 5.51891 5.53518 5.66955 5.69258 5.73487 5.78351 5.81753 5.93110 5.96797 6.05586 6.10266 6.17737 6.26160 6.34405 6.39844 6.45937 6.54356 6.79569 6.83460 6.95273 7.08862 7.40750 7.44002 7.64655 7.72338 7.78425 8.14558 8.55066 8.99576 9.52543 11.01049 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011496 B = 0.005897 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.129006 B = 4746.680549 C = 6393.224918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.065 0.935 9 C 0.196 3.804 10 O -0.389 6.389 11 C 0.024 3.976 12 C 0.069 3.931 13 N -0.560 5.560 14 C 0.072 3.928 15 C -0.075 4.075 16 C -0.091 4.091 17 C -0.102 4.102 18 C -0.152 4.152 19 C 0.099 3.901 20 O -0.498 6.498 21 C -0.137 4.137 22 C -0.055 4.055 23 C -0.081 4.081 24 C 0.077 3.923 25 H 0.264 0.736 26 H 0.003 0.997 27 H 0.001 0.999 28 H 0.038 0.962 29 H 0.034 0.966 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.384 0.616 39 H 0.128 0.872 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.985 -13.859 9.699 19.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.551 4.551 8 H 0.083 0.917 9 C 0.122 3.878 10 O -0.308 6.308 11 C -0.056 4.056 12 C -0.059 4.059 13 N -0.284 5.284 14 C -0.056 4.056 15 C -0.112 4.112 16 C -0.091 4.091 17 C -0.120 4.120 18 C -0.171 4.171 19 C 0.055 3.945 20 O -0.308 6.308 21 C -0.155 4.155 22 C -0.056 4.056 23 C -0.119 4.119 24 C -0.050 4.050 25 H 0.074 0.926 26 H 0.021 0.979 27 H 0.019 0.981 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.239 0.761 39 H 0.146 0.854 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.860 -13.778 9.401 18.887 hybrid contribution -0.382 1.536 0.393 1.631 sum 8.478 -12.242 9.794 17.823 Atomic orbital electron populations 1.69947 1.06131 1.27254 1.50453 1.24935 0.94945 0.99408 0.95090 0.86434 0.79412 0.82037 0.78879 1.19975 1.21122 1.19924 1.20975 0.93885 0.89312 1.50964 0.91684 1.20159 0.88806 0.83745 0.95103 1.87915 1.35125 1.12856 1.94953 1.23024 0.96252 0.87010 0.99270 1.22191 0.94810 0.96663 0.92230 1.59308 1.30934 1.35999 1.02208 1.21634 0.94015 0.99861 0.90063 1.20860 1.00864 0.93798 0.95694 1.19772 0.97374 0.97236 0.94690 1.20917 0.99628 0.96854 0.94639 1.21332 1.00411 0.94349 1.00989 1.18480 0.97414 0.86201 0.92399 1.84884 1.51667 1.31331 1.62889 1.21395 1.01725 0.97115 0.95299 1.19691 0.96330 0.93409 0.96135 1.21005 0.97908 1.02281 0.90717 1.21727 0.94741 0.90091 0.98418 0.92614 0.97926 0.98136 0.94356 0.94744 0.90192 0.90322 0.91070 0.94513 0.90939 0.89780 0.85834 0.85877 0.76097 0.85376 0.90778 0.90106 0.91427 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 22.36 29.54 -169.99 -5.02 17.34 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.51 -15.25 9.43 -34.44 -0.32 -15.57 16 8 H 0.06 1.91 7.81 -52.48 -0.41 1.50 16 9 C 0.20 5.44 5.69 36.00 0.20 5.65 16 10 O -0.39 -9.13 7.22 -35.23 -0.25 -9.38 16 11 C 0.02 0.44 5.90 37.16 0.22 0.66 16 12 C 0.07 1.01 5.75 -3.83 -0.02 0.98 16 13 N -0.56 -8.21 4.26 -236.95 -1.01 -9.22 16 14 C 0.07 0.98 4.59 -4.55 -0.02 0.96 16 15 C -0.07 -0.87 5.52 -27.40 -0.15 -1.02 16 16 C -0.09 -1.24 5.01 -104.52 -0.52 -1.76 16 17 C -0.10 -1.32 9.69 -39.56 -0.38 -1.70 16 18 C -0.15 -2.04 9.99 -39.40 -0.39 -2.44 16 19 C 0.10 1.45 6.71 -39.18 -0.26 1.19 16 20 O -0.50 -6.69 13.50 -19.44 -0.26 -6.95 16 21 C -0.14 -2.06 9.63 -39.39 -0.38 -2.44 16 22 C -0.06 -0.82 5.00 -104.58 -0.52 -1.34 16 23 C -0.08 -1.13 5.52 -27.40 -0.15 -1.28 16 24 C 0.08 1.28 3.96 -4.55 -0.02 1.26 16 25 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 27 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.03 0.65 6.74 -51.93 -0.35 0.30 16 30 H 0.08 1.17 7.92 -51.93 -0.41 0.76 16 31 H 0.08 0.94 7.91 -51.93 -0.41 0.53 16 32 H 0.07 0.83 7.77 -51.93 -0.40 0.43 16 33 H 0.04 0.61 6.98 -51.93 -0.36 0.25 16 34 H 0.07 0.69 7.92 -51.93 -0.41 0.28 16 35 H 0.08 0.95 7.23 -51.93 -0.38 0.57 16 36 H 0.12 1.28 7.98 -52.48 -0.42 0.86 16 37 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.38 2.95 9.06 45.56 0.41 3.36 16 39 H 0.13 1.82 7.98 -52.49 -0.42 1.41 16 40 H 0.07 0.96 7.92 -51.93 -0.41 0.54 16 41 H 0.08 1.01 7.23 -51.93 -0.38 0.64 16 42 H 0.07 1.42 6.15 -51.93 -0.32 1.10 16 43 H 0.08 1.34 7.73 -51.93 -0.40 0.94 16 LS Contribution 342.11 15.07 5.16 5.16 Total: -1.00 -33.44 342.11 -9.38 -42.81 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.89 Total: 2.24 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -2.83 Total: -15.26 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: -0.27 Total: -35.95 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.52 Total: -16.33 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.44 -9.38 -42.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590165252.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.870 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds