Wall clock time and date at job start Tue Mar 31 2020 07:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00127 * 2 1 4 4 H 1.48499 * 109.47139 * 240.00231 * 3 2 1 5 5 H 1.48498 * 109.47064 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46805 * 119.99851 * 3 2 1 7 7 C 1.37882 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99945 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00025 * 359.97438 * 7 2 1 10 10 O 1.42905 * 109.47316 * 180.02562 * 9 7 2 11 11 C 1.42898 * 114.00232 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47019 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47480 * 64.99621 * 12 11 10 14 14 C 1.45377 * 110.99874 * 66.04436 * 13 12 11 15 15 C 1.53185 * 110.83086 * 161.75483 * 14 13 12 16 16 C 1.51493 * 108.29251 * 84.85165 * 15 14 13 17 17 C 1.38316 * 119.75660 * 110.64539 * 16 15 14 18 18 C 1.38221 * 119.69205 * 180.02562 * 17 16 15 19 19 C 1.38752 * 120.00770 * 359.97438 * 18 17 16 20 20 O 1.35903 * 120.02142 * 179.97438 * 19 18 17 21 21 C 1.38804 * 119.96254 * 359.97438 * 19 18 17 22 22 C 1.37356 * 119.83529 * 290.59661 * 16 15 14 23 23 C 1.51468 * 119.88360 * 359.92212 * 22 16 15 24 24 C 1.45362 * 110.99456 * 294.56844 * 13 12 11 25 25 H 0.97000 * 120.00174 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.46849 * 60.00709 * 9 7 2 27 27 H 1.08999 * 109.47256 * 300.00507 * 9 7 2 28 28 H 1.08997 * 109.47298 * 59.99990 * 11 10 9 29 29 H 1.08997 * 109.46655 * 299.99942 * 11 10 9 30 30 H 1.09005 * 109.47032 * 304.99515 * 12 11 10 31 31 H 1.08995 * 109.46733 * 184.99630 * 12 11 10 32 32 H 1.09002 * 109.19811 * 41.42072 * 14 13 12 33 33 H 1.08998 * 109.20095 * 282.08981 * 14 13 12 34 34 H 1.09001 * 109.70234 * 204.55107 * 15 14 13 35 35 H 1.09001 * 109.70038 * 325.11299 * 15 14 13 36 36 H 1.08005 * 120.15526 * 0.04025 * 17 16 15 37 37 H 1.07995 * 119.99637 * 179.97438 * 18 17 16 38 38 H 0.96700 * 114.00161 * 89.99279 * 20 19 18 39 39 H 1.07995 * 120.21509 * 179.97438 * 21 19 18 40 40 H 1.08995 * 109.70138 * 189.17018 * 23 22 16 41 41 H 1.08999 * 109.70185 * 309.76759 * 23 22 16 42 42 H 1.08997 * 109.18543 * 77.84119 * 24 13 12 43 43 H 1.08997 * 109.17542 * 318.52740 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5854 -0.0005 11 6 1.5650 -4.8755 -0.0011 12 6 2.6480 -5.9562 -0.0004 13 7 3.4072 -5.8880 1.2553 14 6 2.5690 -6.2375 2.3905 15 6 3.4247 -6.6057 3.6065 16 6 3.7925 -5.3285 4.3334 17 6 3.2458 -5.0640 5.5761 18 6 3.5819 -3.8980 6.2379 19 6 4.4644 -2.9994 5.6557 20 8 4.7946 -1.8526 6.3059 21 6 5.0098 -3.2723 4.4089 22 6 4.6672 -4.4409 3.7555 23 6 5.2612 -4.7439 2.3955 24 6 4.1464 -4.6399 1.3497 25 1 -0.4850 0.8400 -0.0004 26 1 0.6240 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8896 28 1 0.9452 -4.9823 -0.8913 29 1 0.9446 -4.9827 0.8886 30 1 3.3221 -5.7956 -0.8418 31 1 2.1820 -6.9375 -0.0904 32 1 1.9406 -7.0873 2.1239 33 1 1.9346 -5.3879 2.6427 34 1 2.8573 -7.2566 4.2717 35 1 4.3302 -7.1158 3.2778 36 1 2.5595 -5.7654 6.0273 37 1 3.1575 -3.6863 7.2081 38 1 5.5675 -1.9352 6.8812 39 1 5.6968 -2.5756 3.9518 40 1 6.0463 -4.0227 2.1685 41 1 5.6754 -5.7521 2.3918 42 1 3.4630 -3.8394 1.6327 43 1 4.5857 -4.4097 0.3792 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590165252.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:20 Heat of formation + Delta-G solvation = -91.077629 kcal Electronic energy + Delta-G solvation = -23971.982525 eV Core-core repulsion = 20594.877142 eV Total energy + Delta-G solvation = -3377.105383 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.29853 -39.74140 -38.39762 -37.13104 -34.97472 -34.06706 -33.38037 -30.74652 -30.23482 -28.97552 -27.01206 -25.26108 -24.56618 -23.81513 -23.23046 -21.45525 -21.10321 -18.95909 -18.66277 -17.56828 -17.41707 -17.08970 -16.72336 -16.48941 -16.07313 -15.91675 -15.85438 -15.29757 -15.13564 -14.46734 -14.27892 -13.97516 -13.77491 -13.62962 -13.55160 -13.18869 -12.94488 -12.82796 -12.65205 -12.51688 -12.40502 -12.26827 -12.08642 -11.98894 -11.85803 -11.65351 -11.34631 -11.23625 -10.89824 -10.26687 -9.75061 -9.34510 -9.02927 -8.37615 -6.49851 0.30603 0.39530 1.33351 1.38572 1.46390 2.28809 2.67417 2.92451 2.96324 3.24561 3.27727 3.72560 3.85084 4.03467 4.12613 4.20515 4.29392 4.35157 4.40605 4.47201 4.48811 4.51967 4.61431 4.67894 4.72917 4.75539 4.79804 4.96516 4.99940 5.06078 5.10045 5.11778 5.15266 5.29300 5.35370 5.45402 5.48685 5.51766 5.74048 5.90275 5.96888 6.19707 6.39502 6.49841 6.75693 6.85877 7.21968 8.74717 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011496 B = 0.005897 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.129006 B = 4746.680549 C = 6393.224918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.977 3.023 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.214 3.786 10 O -0.394 6.394 11 C 0.015 3.985 12 C 0.075 3.925 13 N -0.549 5.549 14 C 0.071 3.929 15 C -0.066 4.066 16 C -0.103 4.103 17 C -0.103 4.103 18 C -0.161 4.161 19 C 0.087 3.913 20 O -0.513 6.513 21 C -0.162 4.162 22 C -0.072 4.072 23 C -0.072 4.072 24 C 0.087 3.913 25 H 0.271 0.729 26 H -0.017 1.017 27 H -0.029 1.029 28 H 0.044 0.956 29 H 0.029 0.971 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.099 0.901 33 H -0.001 1.001 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.153 0.847 37 H 0.141 0.859 38 H 0.407 0.593 39 H 0.124 0.876 40 H 0.077 0.923 41 H 0.101 0.899 42 H 0.016 0.984 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.788 -15.199 10.323 20.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.192 4.192 3 Si 0.800 3.200 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.581 4.581 8 H 0.079 0.921 9 C 0.139 3.861 10 O -0.314 6.314 11 C -0.064 4.064 12 C -0.053 4.053 13 N -0.273 5.273 14 C -0.057 4.057 15 C -0.103 4.103 16 C -0.103 4.103 17 C -0.120 4.120 18 C -0.180 4.180 19 C 0.043 3.957 20 O -0.326 6.326 21 C -0.181 4.181 22 C -0.072 4.072 23 C -0.109 4.109 24 C -0.041 4.041 25 H 0.079 0.921 26 H 0.001 0.999 27 H -0.011 1.011 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.100 0.900 31 H 0.137 0.863 32 H 0.117 0.883 33 H 0.018 0.982 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.171 0.829 37 H 0.159 0.841 38 H 0.266 0.734 39 H 0.142 0.858 40 H 0.096 0.904 41 H 0.119 0.881 42 H 0.034 0.966 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.682 -15.146 10.033 20.587 hybrid contribution -0.678 1.896 0.237 2.028 sum 9.004 -13.250 10.270 19.029 Atomic orbital electron populations 1.70059 1.07776 1.28674 1.50548 1.25943 0.95927 1.03357 0.93934 0.85318 0.78270 0.77011 0.79394 1.18462 1.19768 1.19508 1.21302 0.93933 0.90743 1.52099 0.92091 1.19700 0.88623 0.85161 0.92635 1.87918 1.34532 1.13996 1.94905 1.23408 0.98026 0.85738 0.99238 1.22329 0.93722 0.96753 0.92462 1.59449 1.30803 1.34224 1.02778 1.21760 0.94086 0.99318 0.90488 1.20882 1.01311 0.93186 0.94961 1.20107 0.97010 0.97962 0.95241 1.21302 0.99364 0.97059 0.94305 1.21621 1.00073 0.94394 1.01870 1.18675 0.97862 0.86661 0.92527 1.84810 1.53142 1.31257 1.63415 1.21550 1.02711 0.97699 0.96115 1.19877 0.97126 0.93773 0.96463 1.20926 0.96906 1.03539 0.89577 1.21526 0.94673 0.89404 0.98488 0.92056 0.99925 1.01089 0.93780 0.95290 0.89969 0.86271 0.88296 0.98247 0.88005 0.88716 0.82945 0.84071 0.73449 0.85755 0.90433 0.88113 0.96568 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.99 13.29 21.45 0.28 -57.70 16 2 C 0.01 0.41 5.46 84.66 0.46 0.87 16 3 Si 0.98 46.13 29.54 68.60 2.03 48.15 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.54 -33.39 9.43 25.60 0.24 -33.14 16 8 H 0.06 3.70 7.81 -2.91 -0.02 3.68 16 9 C 0.21 12.48 5.69 71.23 0.41 12.88 16 10 O -0.39 -19.30 7.22 -148.98 -1.08 -20.38 16 11 C 0.01 0.54 5.90 71.98 0.42 0.97 16 12 C 0.08 2.08 5.75 86.30 0.50 2.57 16 13 N -0.55 -15.40 4.26 -903.56 -3.85 -19.25 16 14 C 0.07 1.81 4.59 86.65 0.40 2.21 16 15 C -0.07 -1.36 5.52 30.16 0.17 -1.20 16 16 C -0.10 -2.69 5.01 -19.80 -0.10 -2.79 16 17 C -0.10 -2.46 9.69 22.28 0.22 -2.25 16 18 C -0.16 -4.18 9.99 22.39 0.22 -3.95 16 19 C 0.09 2.55 6.71 22.53 0.15 2.70 16 20 O -0.51 -13.73 13.50 -92.46 -1.25 -14.98 16 21 C -0.16 -5.02 9.63 22.40 0.22 -4.81 16 22 C -0.07 -2.13 5.00 -19.84 -0.10 -2.23 16 23 C -0.07 -1.98 5.52 30.16 0.17 -1.82 16 24 C 0.09 2.93 3.96 86.66 0.34 3.27 16 25 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 26 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 27 H -0.03 -1.79 8.14 -2.39 -0.02 -1.81 16 28 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.03 1.11 6.74 -2.39 -0.02 1.10 16 30 H 0.08 2.27 7.92 -2.38 -0.02 2.26 16 31 H 0.12 2.40 7.91 -2.39 -0.02 2.39 16 32 H 0.10 1.98 7.77 -2.39 -0.02 1.96 16 33 H 0.00 -0.03 6.98 -2.39 -0.02 -0.04 16 34 H 0.10 1.53 7.92 -2.39 -0.02 1.51 16 35 H 0.09 1.80 7.23 -2.39 -0.02 1.78 16 36 H 0.15 2.68 7.98 -2.91 -0.02 2.65 16 37 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 38 H 0.41 6.05 9.06 -74.06 -0.67 5.38 16 39 H 0.12 3.74 7.98 -2.91 -0.02 3.72 16 40 H 0.08 2.03 7.92 -2.39 -0.02 2.01 16 41 H 0.10 2.35 7.23 -2.39 -0.02 2.33 16 42 H 0.02 0.72 6.15 -2.39 -0.01 0.70 16 43 H 0.07 2.35 7.73 -2.39 -0.02 2.33 16 Total: -1.00 -74.99 342.11 0.18 -74.81 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.33 Total: 16.06 kcal Atomic # 6 Polarization: -30.42 SS G_CDS: 3.71 Total: -26.71 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: -3.57 Total: -76.96 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -2.32 Total: -35.35 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Total: -74.99 0.18 -74.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590165252.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.271 kcal (2) G-P(sol) polarization free energy of solvation -74.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds