Wall clock time and date at job start Tue Mar 31 2020 07:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00179 * 2 1 4 4 H 1.48503 * 109.46834 * 269.99839 * 3 2 1 5 5 H 1.48499 * 109.47231 * 29.99804 * 3 2 1 6 6 H 1.48495 * 109.47108 * 149.99980 * 3 2 1 7 7 C 1.37875 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00246 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00105 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47186 * 179.97438 * 9 7 2 11 11 C 1.42902 * 113.99749 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46674 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.47330 * 65.00086 * 12 11 10 14 14 C 1.48532 * 110.99761 * 52.59945 * 13 12 11 15 15 C 1.54946 * 103.22418 * 159.72312 * 14 13 12 16 16 C 1.54595 * 102.91963 * 322.58299 * 15 14 13 17 17 C 1.47899 * 111.00038 * 169.99822 * 13 12 11 18 18 H 1.09003 * 110.08209 * 333.59485 * 17 13 12 19 19 C 1.50698 * 109.91593 * 94.80123 * 17 13 12 20 20 C 1.38269 * 119.94432 * 219.04157 * 19 17 13 21 21 C 1.38137 * 120.06013 * 180.02562 * 20 19 17 22 22 C 1.38737 * 119.94162 * 359.97438 * 21 20 19 23 23 O 1.35896 * 120.05545 * 180.02562 * 22 21 20 24 24 C 1.38734 * 119.88732 * 0.27760 * 22 21 20 25 25 C 1.38140 * 119.94299 * 359.46795 * 24 22 21 26 26 H 0.97008 * 119.99788 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47065 * 59.99876 * 9 7 2 28 28 H 1.09000 * 109.47376 * 299.99610 * 9 7 2 29 29 H 1.08996 * 109.47690 * 60.00166 * 11 10 9 30 30 H 1.09000 * 109.47101 * 299.99564 * 11 10 9 31 31 H 1.08998 * 109.47511 * 304.99252 * 12 11 10 32 32 H 1.09009 * 109.47095 * 184.99907 * 12 11 10 33 33 H 1.09002 * 110.67117 * 41.29068 * 14 13 12 34 34 H 1.09002 * 110.81267 * 278.22263 * 14 13 12 35 35 H 1.09000 * 110.71964 * 204.22716 * 15 14 13 36 36 H 1.08998 * 110.72240 * 80.94340 * 15 14 13 37 37 H 1.08990 * 110.31330 * 263.03843 * 16 15 14 38 38 H 1.09001 * 110.38985 * 140.91549 * 16 15 14 39 39 H 1.08008 * 119.96973 * 0.02562 * 20 19 17 40 40 H 1.07995 * 120.03580 * 180.02562 * 21 20 19 41 41 H 0.96700 * 114.00170 * 90.00174 * 23 22 21 42 42 H 1.07999 * 120.02623 * 179.72382 * 24 22 21 43 43 H 1.08005 * 119.97486 * 180.27482 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5649 -4.8754 0.0000 12 6 2.6479 -5.9562 -0.0006 13 7 3.4081 -5.8884 1.2546 14 6 2.5000 -5.9260 2.4294 15 6 3.4321 -6.3730 3.5837 16 6 4.3639 -7.3985 2.8981 17 6 4.3009 -7.0589 1.3974 18 1 3.8992 -7.9061 0.8415 19 6 5.6784 -6.7187 0.8897 20 6 6.4021 -7.6563 0.1763 21 6 7.6652 -7.3472 -0.2898 22 6 8.2074 -6.0945 -0.0419 23 8 9.4496 -5.7878 -0.4998 24 6 7.4814 -5.1572 0.6786 25 6 6.2165 -5.4695 1.1379 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5570 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 0.9451 -4.9822 -0.8902 30 1 0.9445 -4.9827 0.8897 31 1 3.3214 -5.7953 -0.8425 32 1 2.1819 -6.9375 -0.0906 33 1 1.7022 -6.6526 2.2760 34 1 2.0856 -4.9381 2.6303 35 1 2.8589 -6.8456 4.3813 36 1 4.0041 -5.5279 3.9668 37 1 4.0037 -8.4124 3.0720 38 1 5.3837 -7.2915 3.2677 39 1 5.9794 -8.6313 -0.0168 40 1 8.2299 -8.0798 -0.8473 41 1 9.4575 -5.3979 -1.3847 42 1 7.9031 -4.1829 0.8767 43 1 5.6491 -4.7387 1.6951 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590165319.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:42 Heat of formation + Delta-G solvation = -61.687227 kcal Electronic energy + Delta-G solvation = -23221.494465 eV Core-core repulsion = 19845.663546 eV Total energy + Delta-G solvation = -3375.830920 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.11700 -38.82626 -36.79912 -36.19212 -32.99095 -32.18261 -31.07060 -30.87411 -28.15179 -27.26810 -26.48860 -23.10018 -22.71241 -22.26828 -22.02320 -20.37018 -19.99655 -18.38781 -16.57507 -16.42732 -16.12817 -15.54036 -15.40255 -15.36503 -14.71258 -14.49247 -14.11984 -13.79951 -13.56558 -13.39881 -13.27659 -12.90133 -12.66553 -12.28035 -12.04700 -11.93504 -11.62481 -11.49075 -11.17142 -11.03688 -10.95253 -10.80788 -10.65672 -10.56391 -10.43680 -10.37376 -9.95329 -9.06553 -8.90628 -8.77745 -8.40654 -8.23031 -8.11352 -6.08140 -4.09013 1.25433 1.44424 3.32135 3.37107 3.42907 3.62215 4.04847 4.23985 4.37555 4.62034 4.71638 4.83921 4.93174 5.00195 5.02985 5.13116 5.28548 5.29300 5.43299 5.47313 5.56933 5.64631 5.67594 5.75019 5.82685 5.86706 5.94436 5.97998 6.06645 6.12330 6.19833 6.21678 6.34588 6.37362 6.50537 6.68947 6.89034 7.09437 7.12656 7.25652 7.45889 7.61643 7.83698 8.19673 8.64021 9.05595 9.55857 11.03555 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013313 B = 0.004178 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.716237 B = 6700.419548 C = 8036.782255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.056 3.944 3 Si 0.906 3.094 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.509 4.509 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.379 6.379 11 C 0.063 3.937 12 C 0.055 3.945 13 N -0.493 5.493 14 C 0.035 3.965 15 C -0.123 4.123 16 C -0.121 4.121 17 C 0.102 3.898 18 H 0.057 0.943 19 C -0.076 4.076 20 C -0.105 4.105 21 C -0.152 4.152 22 C 0.096 3.904 23 O -0.504 6.504 24 C -0.147 4.147 25 C -0.061 4.061 26 H 0.263 0.737 27 H 0.001 0.999 28 H 0.003 0.997 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.081 0.919 32 H 0.039 0.961 33 H 0.040 0.960 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.388 0.612 42 H 0.127 0.873 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.389 -17.447 2.629 20.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.733 3.267 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.548 4.548 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.299 6.299 11 C -0.015 4.015 12 C -0.073 4.073 13 N -0.217 5.217 14 C -0.092 4.092 15 C -0.161 4.161 16 C -0.159 4.159 17 C -0.006 4.006 18 H 0.075 0.925 19 C -0.077 4.077 20 C -0.124 4.124 21 C -0.170 4.170 22 C 0.052 3.948 23 O -0.314 6.314 24 C -0.166 4.166 25 C -0.079 4.079 26 H 0.073 0.927 27 H 0.019 0.981 28 H 0.020 0.980 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.100 0.900 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.244 0.756 42 H 0.144 0.856 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 10.897 -17.025 3.146 20.457 hybrid contribution -0.629 0.314 -0.683 0.980 sum 10.268 -16.711 2.463 19.768 Atomic orbital electron populations 1.69968 1.06105 1.27044 1.50889 1.24937 0.94938 0.99372 0.95257 0.86364 0.79727 0.82371 0.78203 1.20522 1.21134 1.19595 1.21053 0.94067 0.89312 1.50341 0.91536 1.20174 0.88846 0.83930 0.95064 1.87961 1.34600 1.12271 1.95019 1.22299 0.93824 0.86336 0.99018 1.22315 0.95908 0.96067 0.93054 1.64635 1.17495 1.37785 1.01793 1.23251 0.94289 1.01748 0.89941 1.22497 0.97444 0.98888 0.97270 1.22445 1.00930 0.99023 0.93506 1.21295 0.91128 0.92252 0.95939 0.92503 1.19753 0.95333 0.94278 0.98301 1.20845 0.94189 0.99154 0.98165 1.21252 0.95938 0.96992 1.02859 1.18500 0.84751 0.93200 0.98381 1.84795 1.25013 1.84014 1.37567 1.21506 0.94890 0.99605 1.00585 1.21025 0.93302 0.96173 0.97413 0.92747 0.98074 0.97965 0.94346 0.94458 0.90042 0.94289 0.94138 0.89025 0.91206 0.90495 0.91511 0.90822 0.86190 0.85933 0.75645 0.85552 0.84301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.51 -15.10 9.43 -34.44 -0.32 -15.42 16 8 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 9 C 0.19 5.36 5.69 36.00 0.20 5.56 16 10 O -0.38 -9.17 10.27 -35.23 -0.36 -9.53 16 11 C 0.06 1.17 5.76 37.16 0.21 1.38 16 12 C 0.05 0.83 5.41 -3.82 -0.02 0.81 16 13 N -0.49 -7.23 4.20 -223.93 -0.94 -8.17 16 14 C 0.04 0.47 5.09 -1.89 -0.01 0.46 16 15 C -0.12 -1.36 7.06 -24.87 -0.18 -1.53 16 16 C -0.12 -1.25 6.55 -25.37 -0.17 -1.42 16 17 C 0.10 1.23 2.66 -67.80 -0.18 1.05 16 18 H 0.06 0.63 7.46 -51.93 -0.39 0.24 16 19 C -0.08 -0.96 4.75 -104.60 -0.50 -1.46 16 20 C -0.10 -1.19 9.67 -39.61 -0.38 -1.57 16 21 C -0.15 -1.73 9.99 -39.43 -0.39 -2.12 16 22 C 0.10 1.19 6.71 -39.21 -0.26 0.93 16 23 O -0.50 -5.60 13.50 -19.41 -0.26 -5.87 16 24 C -0.15 -1.96 9.99 -39.43 -0.39 -2.35 16 25 C -0.06 -0.85 9.32 -39.61 -0.37 -1.22 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 28 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.04 0.66 6.52 -51.93 -0.34 0.33 16 31 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.04 0.50 7.82 -51.92 -0.41 0.09 16 33 H 0.04 0.50 8.01 -51.93 -0.42 0.08 16 34 H 0.09 1.45 7.56 -51.93 -0.39 1.05 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 39 H 0.12 1.09 8.04 -52.48 -0.42 0.67 16 40 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.39 2.56 9.06 45.56 0.41 2.97 16 42 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.14 2.12 7.70 -52.48 -0.40 1.72 16 LS Contribution 354.73 15.07 5.35 5.35 Total: -1.00 -32.89 354.73 -9.46 -42.35 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -6.10 Total: 0.61 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -2.85 Total: -15.38 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: -0.20 Total: -34.52 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.62 Total: -15.40 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.89 -9.46 -42.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590165319.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.337 kcal (2) G-P(sol) polarization free energy of solvation -32.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds