Wall clock time and date at job start Tue Mar 31 2020 07:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00179 * 2 1 4 4 H 1.48503 * 109.46834 * 269.99839 * 3 2 1 5 5 H 1.48499 * 109.47231 * 29.99804 * 3 2 1 6 6 H 1.48495 * 109.47108 * 149.99980 * 3 2 1 7 7 C 1.37875 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00246 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00105 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47186 * 179.97438 * 9 7 2 11 11 C 1.42902 * 113.99749 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46674 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.47330 * 65.00086 * 12 11 10 14 14 C 1.48532 * 110.99761 * 52.59945 * 13 12 11 15 15 C 1.54946 * 103.22418 * 159.72312 * 14 13 12 16 16 C 1.54595 * 102.91963 * 322.58299 * 15 14 13 17 17 C 1.47899 * 111.00038 * 169.99822 * 13 12 11 18 18 H 1.09003 * 110.08209 * 333.59485 * 17 13 12 19 19 C 1.50698 * 109.91593 * 94.80123 * 17 13 12 20 20 C 1.38269 * 119.94432 * 219.04157 * 19 17 13 21 21 C 1.38137 * 120.06013 * 180.02562 * 20 19 17 22 22 C 1.38737 * 119.94162 * 359.97438 * 21 20 19 23 23 O 1.35896 * 120.05545 * 180.02562 * 22 21 20 24 24 C 1.38734 * 119.88732 * 0.27760 * 22 21 20 25 25 C 1.38140 * 119.94299 * 359.46795 * 24 22 21 26 26 H 0.97008 * 119.99788 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47065 * 59.99876 * 9 7 2 28 28 H 1.09000 * 109.47376 * 299.99610 * 9 7 2 29 29 H 1.08996 * 109.47690 * 60.00166 * 11 10 9 30 30 H 1.09000 * 109.47101 * 299.99564 * 11 10 9 31 31 H 1.08998 * 109.47511 * 304.99252 * 12 11 10 32 32 H 1.09009 * 109.47095 * 184.99907 * 12 11 10 33 33 H 1.09002 * 110.67117 * 41.29068 * 14 13 12 34 34 H 1.09002 * 110.81267 * 278.22263 * 14 13 12 35 35 H 1.09000 * 110.71964 * 204.22716 * 15 14 13 36 36 H 1.08998 * 110.72240 * 80.94340 * 15 14 13 37 37 H 1.08990 * 110.31330 * 263.03843 * 16 15 14 38 38 H 1.09001 * 110.38985 * 140.91549 * 16 15 14 39 39 H 1.08008 * 119.96973 * 0.02562 * 20 19 17 40 40 H 1.07995 * 120.03580 * 180.02562 * 21 20 19 41 41 H 0.96700 * 114.00170 * 90.00174 * 23 22 21 42 42 H 1.07999 * 120.02623 * 179.72382 * 24 22 21 43 43 H 1.08005 * 119.97486 * 180.27482 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5649 -4.8754 0.0000 12 6 2.6479 -5.9562 -0.0006 13 7 3.4081 -5.8884 1.2546 14 6 2.5000 -5.9260 2.4294 15 6 3.4321 -6.3730 3.5837 16 6 4.3639 -7.3985 2.8981 17 6 4.3009 -7.0589 1.3974 18 1 3.8992 -7.9061 0.8415 19 6 5.6784 -6.7187 0.8897 20 6 6.4021 -7.6563 0.1763 21 6 7.6652 -7.3472 -0.2898 22 6 8.2074 -6.0945 -0.0419 23 8 9.4496 -5.7878 -0.4998 24 6 7.4814 -5.1572 0.6786 25 6 6.2165 -5.4695 1.1379 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5570 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 0.9451 -4.9822 -0.8902 30 1 0.9445 -4.9827 0.8897 31 1 3.3214 -5.7953 -0.8425 32 1 2.1819 -6.9375 -0.0906 33 1 1.7022 -6.6526 2.2760 34 1 2.0856 -4.9381 2.6303 35 1 2.8589 -6.8456 4.3813 36 1 4.0041 -5.5279 3.9668 37 1 4.0037 -8.4124 3.0720 38 1 5.3837 -7.2915 3.2677 39 1 5.9794 -8.6313 -0.0168 40 1 8.2299 -8.0798 -0.8473 41 1 9.4575 -5.3979 -1.3847 42 1 7.9031 -4.1829 0.8767 43 1 5.6491 -4.7387 1.6951 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590165319.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:41 Heat of formation + Delta-G solvation = -84.220228 kcal Electronic energy + Delta-G solvation = -23222.471570 eV Core-core repulsion = 19845.663546 eV Total energy + Delta-G solvation = -3376.808024 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.08029 -39.84218 -38.39566 -37.30166 -35.00627 -33.59371 -32.02272 -31.80328 -29.88336 -28.26735 -28.20902 -24.51877 -24.16832 -23.67875 -23.05086 -21.44127 -21.00952 -19.27800 -18.62172 -17.66257 -17.31850 -17.24934 -16.43770 -16.40853 -16.30593 -15.95493 -15.44331 -15.15881 -14.80503 -14.50770 -14.33398 -14.23754 -13.76068 -13.61876 -13.39062 -13.21546 -12.88322 -12.84016 -12.75172 -12.62615 -12.29564 -12.19224 -12.01082 -11.88474 -11.69352 -11.42410 -11.31499 -11.26024 -10.85569 -10.18689 -9.85859 -9.33822 -9.27320 -8.32258 -6.43864 0.32615 0.49517 1.38625 1.41317 1.53549 2.34389 2.68981 3.00692 3.01554 3.24362 3.38584 3.69325 3.78558 3.98263 4.11117 4.13168 4.14107 4.26734 4.30185 4.35195 4.47105 4.54813 4.60573 4.67163 4.75856 4.82235 4.84827 4.96582 4.98261 4.99974 5.05288 5.18287 5.18954 5.21809 5.31556 5.44457 5.54702 5.55257 5.69890 5.96474 5.97363 6.07008 6.20099 6.56678 6.85925 6.87166 7.28378 8.80159 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013313 B = 0.004178 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.716237 B = 6700.419548 C = 8036.782255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.980 3.020 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.211 3.789 10 O -0.395 6.395 11 C 0.055 3.945 12 C 0.065 3.935 13 N -0.520 5.520 14 C 0.035 3.965 15 C -0.118 4.118 16 C -0.113 4.113 17 C 0.104 3.896 18 H 0.077 0.923 19 C -0.084 4.084 20 C -0.100 4.100 21 C -0.151 4.151 22 C 0.091 3.909 23 O -0.512 6.512 24 C -0.166 4.166 25 C -0.080 4.080 26 H 0.270 0.730 27 H -0.018 1.018 28 H -0.017 1.017 29 H 0.045 0.955 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.150 0.850 40 H 0.146 0.854 41 H 0.407 0.593 42 H 0.123 0.877 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.324 -19.110 2.392 22.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.190 4.190 3 Si 0.803 3.197 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.076 0.924 9 C 0.136 3.864 10 O -0.314 6.314 11 C -0.023 4.023 12 C -0.063 4.063 13 N -0.245 5.245 14 C -0.093 4.093 15 C -0.156 4.156 16 C -0.151 4.151 17 C -0.004 4.004 18 H 0.095 0.905 19 C -0.085 4.085 20 C -0.118 4.118 21 C -0.169 4.169 22 C 0.047 3.953 23 O -0.325 6.325 24 C -0.184 4.184 25 C -0.098 4.098 26 H 0.079 0.921 27 H 0.000 1.000 28 H 0.000 1.000 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.168 0.832 40 H 0.164 0.836 41 H 0.266 0.734 42 H 0.141 0.859 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 11.834 -18.706 2.898 22.324 hybrid contribution -0.918 0.774 -0.631 1.357 sum 10.916 -17.933 2.266 21.116 Atomic orbital electron populations 1.70069 1.07695 1.28569 1.50696 1.25914 0.95919 1.03222 0.93956 0.85232 0.78385 0.77239 0.78866 1.19236 1.19770 1.19083 1.21349 0.93909 0.90922 1.51969 0.92404 1.19769 0.88618 0.84982 0.93081 1.87921 1.34630 1.13818 1.95048 1.22640 0.95476 0.84650 0.99504 1.22199 0.94828 0.96044 0.93237 1.64538 1.18150 1.40099 1.01695 1.23187 0.95108 1.00329 0.90648 1.22462 0.97217 0.98846 0.97052 1.22427 1.00654 0.99949 0.92051 1.21373 0.90069 0.91620 0.97348 0.90502 1.19902 0.95914 0.93988 0.98666 1.21144 0.93924 0.99893 0.96825 1.21545 0.96144 0.96804 1.02444 1.18598 0.84965 0.93517 0.98215 1.84740 1.24366 1.84244 1.39139 1.21572 0.95151 1.00096 1.01606 1.20898 0.93688 0.96757 0.98479 0.92070 0.99994 0.99959 0.93717 0.93961 0.91134 0.90740 0.92451 0.92595 0.88919 0.92126 0.88834 0.91043 0.83246 0.83601 0.73429 0.85941 0.86847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.74 13.29 21.45 0.28 -56.45 16 2 C 0.01 0.48 5.46 84.65 0.46 0.95 16 3 Si 0.98 45.30 29.54 68.60 2.03 47.33 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.54 -33.27 9.43 25.60 0.24 -33.02 16 8 H 0.06 3.55 7.81 -2.91 -0.02 3.52 16 9 C 0.21 12.15 5.69 71.24 0.41 12.56 16 10 O -0.39 -19.89 10.27 -148.98 -1.53 -21.42 16 11 C 0.05 2.05 5.76 71.98 0.41 2.47 16 12 C 0.06 1.91 5.41 86.30 0.47 2.38 16 13 N -0.52 -15.06 4.20 -862.38 -3.62 -18.68 16 14 C 0.03 0.93 5.09 86.65 0.44 1.37 16 15 C -0.12 -2.49 7.06 31.80 0.22 -2.26 16 16 C -0.11 -2.07 6.55 31.47 0.21 -1.87 16 17 C 0.10 2.29 2.66 44.31 0.12 2.41 16 18 H 0.08 1.41 7.46 -2.39 -0.02 1.39 16 19 C -0.08 -2.03 4.75 -19.85 -0.09 -2.13 16 20 C -0.10 -1.98 9.67 22.25 0.22 -1.76 16 21 C -0.15 -3.08 9.99 22.37 0.22 -2.86 16 22 C 0.09 2.18 6.71 22.51 0.15 2.34 16 23 O -0.51 -10.74 13.50 -92.38 -1.25 -11.99 16 24 C -0.17 -4.52 9.99 22.37 0.22 -4.29 16 25 C -0.08 -2.30 9.32 22.25 0.21 -2.09 16 26 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 27 H -0.02 -1.06 8.14 -2.38 -0.02 -1.08 16 28 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 29 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.04 1.54 6.52 -2.39 -0.02 1.53 16 31 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.07 1.68 7.82 -2.38 -0.02 1.66 16 33 H 0.06 1.32 8.01 -2.39 -0.02 1.30 16 34 H 0.06 1.87 7.56 -2.39 -0.02 1.85 16 35 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.07 1.36 7.68 -2.39 -0.02 1.35 16 39 H 0.15 2.06 8.04 -2.91 -0.02 2.04 16 40 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 41 H 0.41 4.82 9.06 -74.06 -0.67 4.14 16 42 H 0.12 3.25 8.06 -2.91 -0.02 3.23 16 43 H 0.11 3.76 7.70 -2.91 -0.02 3.74 16 Total: -1.00 -72.57 354.73 0.14 -72.44 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.32 Total: 14.60 kcal Atomic # 6 Polarization: -29.72 SS G_CDS: 3.91 Total: -25.82 kcal Atomic # 7 Polarization: -71.80 SS G_CDS: -3.34 Total: -75.14 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -2.78 Total: -33.41 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -72.57 0.14 -72.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590165319.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.781 kcal (2) G-P(sol) polarization free energy of solvation -72.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds