Wall clock time and date at job start Tue Mar 31 2020 07:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99989 * 2 1 4 4 H 1.48503 * 109.47223 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47488 * 300.00418 * 3 2 1 6 6 H 1.48500 * 109.47156 * 60.00572 * 3 2 1 7 7 C 1.37874 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99773 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00537 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.42902 * 114.00119 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47194 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47172 * 64.99533 * 12 11 10 14 14 C 1.46898 * 110.99900 * 174.24813 * 13 12 11 15 15 C 1.52998 * 110.34840 * 53.70909 * 14 13 12 16 16 O 1.42899 * 109.47264 * 56.46549 * 15 14 13 17 17 C 1.54515 * 110.41071 * 291.54509 * 14 13 12 18 18 C 1.54337 * 102.32020 * 267.72222 * 17 14 13 19 19 C 1.51371 * 105.17298 * 333.46911 * 18 17 14 20 20 C 1.38499 * 130.39330 * 197.15357 * 19 18 17 21 21 C 1.38101 * 120.21771 * 180.02562 * 20 19 18 22 22 C 1.38256 * 119.93243 * 359.97438 * 21 20 19 23 23 C 1.38100 * 119.93647 * 0.02562 * 22 21 20 24 24 C 1.38221 * 109.75919 * 17.17313 * 19 18 17 25 25 H 0.97001 * 120.00035 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46967 * 59.99980 * 9 7 2 27 27 H 1.09001 * 109.47328 * 300.00680 * 9 7 2 28 28 H 1.08994 * 109.47477 * 59.99804 * 11 10 9 29 29 H 1.09000 * 109.46940 * 299.99762 * 11 10 9 30 30 H 1.09000 * 109.46685 * 305.00094 * 12 11 10 31 31 H 1.08998 * 109.47279 * 184.99882 * 12 11 10 32 32 H 1.00895 * 111.00636 * 298.20124 * 13 12 11 33 33 H 1.09003 * 109.47371 * 176.46731 * 15 14 13 34 34 H 1.09005 * 109.47162 * 296.46209 * 15 14 13 35 35 H 0.96696 * 114.00041 * 180.02562 * 16 15 14 36 36 H 1.09003 * 111.02025 * 149.44396 * 17 14 13 37 37 H 1.09000 * 110.68772 * 25.85075 * 17 14 13 38 38 H 1.09000 * 110.30678 * 214.54159 * 18 17 14 39 39 H 1.08997 * 110.30273 * 92.38640 * 18 17 14 40 40 H 1.08005 * 119.89105 * 0.02562 * 20 19 18 41 41 H 1.07999 * 120.03376 * 179.97438 * 21 20 19 42 42 H 1.07998 * 120.03331 * 180.02562 * 22 21 20 43 43 H 1.08004 * 119.89381 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6480 -5.9562 -0.0004 13 7 3.4072 -5.8879 1.2553 14 6 4.3662 -6.9964 1.3516 15 6 5.2590 -7.0369 0.1097 16 8 5.9155 -5.7772 -0.0462 17 6 3.6218 -8.3400 1.5198 18 6 3.5562 -8.4901 3.0545 19 6 4.7421 -7.7100 3.5800 20 6 5.3628 -7.7458 4.8176 21 6 6.4466 -6.9296 5.0755 22 6 6.9145 -6.0740 4.0955 23 6 6.2970 -6.0369 2.8608 24 6 5.2097 -6.8543 2.6004 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 0.9452 -4.9822 -0.8913 29 1 0.9446 -4.9827 0.8887 30 1 3.3221 -5.7955 -0.8417 31 1 2.1820 -6.9375 -0.0904 32 1 3.8729 -4.9978 1.3484 33 1 6.0048 -7.8236 0.2238 34 1 4.6485 -7.2399 -0.7702 35 1 6.4991 -5.7305 -0.8158 36 1 4.1870 -9.1586 1.0742 37 1 2.6206 -8.2815 1.0930 38 1 3.6393 -9.5399 3.3357 39 1 2.6267 -8.0679 3.4363 40 1 4.9981 -8.4143 5.5835 41 1 6.9280 -6.9597 6.0418 42 1 7.7622 -5.4353 4.2953 43 1 6.6634 -5.3685 2.0956 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590167797.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:05 Heat of formation + Delta-G solvation = -71.392223 kcal Electronic energy + Delta-G solvation = -23450.692187 eV Core-core repulsion = 20074.440428 eV Total energy + Delta-G solvation = -3376.251760 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.57461 -37.74612 -36.62588 -35.69549 -33.68651 -32.57905 -31.21138 -29.17838 -28.76140 -27.39337 -26.35799 -24.05424 -22.84453 -22.26968 -21.52706 -20.75994 -19.30267 -17.31696 -16.89411 -16.28943 -15.87940 -15.53710 -15.35077 -15.21305 -14.94855 -14.50134 -14.24388 -14.02761 -13.63746 -13.30103 -13.02846 -12.86721 -12.51190 -12.32070 -12.18560 -11.85701 -11.49052 -11.35297 -11.21142 -11.14047 -11.00554 -10.76811 -10.72548 -10.64432 -10.44511 -9.98156 -9.95558 -9.03517 -8.79859 -8.75161 -8.56288 -8.11005 -8.07581 -6.06560 -4.07609 1.38609 1.47102 3.32045 3.38330 3.45208 3.74114 4.06345 4.31669 4.39309 4.48349 4.62222 4.87957 4.99683 5.03841 5.04946 5.15735 5.25568 5.26824 5.30078 5.38049 5.47022 5.54355 5.58403 5.70826 5.76178 5.82041 5.85947 5.98406 6.07864 6.14189 6.22640 6.27716 6.42177 6.49671 6.58961 6.76240 7.05426 7.16615 7.29795 7.49458 7.55878 7.75938 7.84727 8.21045 8.64679 9.06663 9.57142 11.05158 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017109 B = 0.003765 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.186889 B = 7435.074790 C = 8017.285810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.511 4.511 8 H 0.066 0.934 9 C 0.197 3.803 10 O -0.395 6.395 11 C 0.065 3.935 12 C 0.062 3.938 13 N -0.660 5.660 14 C 0.157 3.843 15 C 0.051 3.949 16 O -0.561 6.561 17 C -0.109 4.109 18 C -0.073 4.073 19 C -0.084 4.084 20 C -0.118 4.118 21 C -0.118 4.118 22 C -0.130 4.130 23 C -0.086 4.086 24 C -0.080 4.080 25 H 0.263 0.737 26 H 0.003 0.997 27 H 0.005 0.995 28 H 0.038 0.962 29 H 0.044 0.956 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.365 0.635 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.377 0.623 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.390 -20.029 4.362 23.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.549 4.549 8 H 0.084 0.916 9 C 0.122 3.878 10 O -0.315 6.315 11 C -0.013 4.013 12 C -0.067 4.067 13 N -0.293 5.293 14 C 0.065 3.935 15 C -0.029 4.029 16 O -0.366 6.366 17 C -0.147 4.147 18 C -0.110 4.110 19 C -0.085 4.085 20 C -0.136 4.136 21 C -0.136 4.136 22 C -0.148 4.148 23 C -0.104 4.104 24 C -0.080 4.080 25 H 0.072 0.928 26 H 0.020 0.980 27 H 0.023 0.977 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.186 0.814 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.224 0.776 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.590 -20.039 5.262 23.268 hybrid contribution 0.997 1.085 -1.148 1.868 sum 11.587 -18.954 4.114 22.593 Atomic orbital electron populations 1.69977 1.06097 1.26948 1.50869 1.24942 0.94952 0.99392 0.95246 0.86303 0.80059 0.82700 0.77566 1.19489 1.20915 1.20852 1.21102 0.94069 0.89400 1.50367 0.91554 1.20163 0.88734 0.83618 0.95245 1.87826 1.35495 1.12980 1.95176 1.22257 0.94377 0.85453 0.99216 1.22017 0.95850 0.97789 0.91015 1.60657 1.27139 1.06235 1.35233 1.20497 0.89395 0.93341 0.90278 1.22929 0.95346 0.86035 0.98596 1.86511 1.64177 1.34330 1.51539 1.22371 1.01178 0.94797 0.96355 1.20951 0.96517 0.98944 0.94603 1.20583 0.96395 0.97707 0.93781 1.20545 0.96708 1.00452 0.95915 1.21011 0.96928 0.96593 0.99043 1.21054 1.00626 0.99589 0.93550 1.20886 0.94783 0.97742 0.96988 1.20234 0.95521 0.97010 0.95274 0.92783 0.97952 0.97717 0.94391 0.93738 0.94359 0.90874 0.81398 0.93783 0.93265 0.77588 0.90928 0.89555 0.91099 0.89539 0.86567 0.86252 0.86151 0.85181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 22.28 29.54 -169.99 -5.02 17.26 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.51 -15.41 9.43 -34.44 -0.32 -15.73 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.58 16 9 C 0.20 5.55 5.69 36.00 0.20 5.76 16 10 O -0.39 -9.76 9.95 -35.23 -0.35 -10.11 16 11 C 0.06 1.25 6.28 37.16 0.23 1.48 16 12 C 0.06 0.96 5.20 -3.82 -0.02 0.94 16 13 N -0.66 -10.44 6.04 -100.00 -0.60 -11.04 16 14 C 0.16 2.00 0.57 -131.63 -0.07 1.93 16 15 C 0.05 0.58 5.15 37.16 0.19 0.77 16 16 O -0.56 -6.96 11.32 -35.23 -0.40 -7.36 16 17 C -0.11 -1.13 6.08 -25.24 -0.15 -1.29 16 18 C -0.07 -0.77 6.77 -26.85 -0.18 -0.95 16 19 C -0.08 -1.05 6.14 -104.20 -0.64 -1.69 16 20 C -0.12 -1.35 10.04 -39.54 -0.40 -1.75 16 21 C -0.12 -1.31 10.05 -39.63 -0.40 -1.70 16 22 C -0.13 -1.56 10.05 -39.63 -0.40 -1.96 16 23 C -0.09 -1.16 9.51 -39.54 -0.38 -1.54 16 24 C -0.08 -1.09 5.13 -104.20 -0.53 -1.62 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 27 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.04 0.61 6.72 -51.93 -0.35 0.26 16 31 H 0.07 0.92 6.32 -51.93 -0.33 0.59 16 32 H 0.36 6.87 8.08 -39.29 -0.32 6.56 16 33 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.53 6.76 -51.93 -0.35 0.18 16 35 H 0.38 3.10 9.12 45.56 0.42 3.52 16 36 H 0.07 0.62 7.93 -51.93 -0.41 0.21 16 37 H 0.09 0.87 6.30 -51.93 -0.33 0.55 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 41 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 42 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 43 H 0.13 1.80 6.61 -52.48 -0.35 1.46 16 LS Contribution 348.11 15.07 5.25 5.25 Total: -1.00 -33.44 348.11 -9.15 -42.59 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -5.79 Total: 5.93 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -2.97 Total: -15.82 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.13 Total: -37.74 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.75 Total: -17.47 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.44 -9.15 -42.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590167797.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.806 kcal (2) G-P(sol) polarization free energy of solvation -33.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds