Wall clock time and date at job start Tue Mar 31 2020 07:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99989 * 2 1 4 4 H 1.48503 * 109.47223 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47488 * 300.00418 * 3 2 1 6 6 H 1.48500 * 109.47156 * 60.00572 * 3 2 1 7 7 C 1.37874 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99773 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00537 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.42902 * 114.00119 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47194 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47172 * 64.99533 * 12 11 10 14 14 C 1.46898 * 110.99900 * 174.24813 * 13 12 11 15 15 C 1.52998 * 110.34840 * 53.70909 * 14 13 12 16 16 O 1.42899 * 109.47264 * 56.46549 * 15 14 13 17 17 C 1.54515 * 110.41071 * 291.54509 * 14 13 12 18 18 C 1.54337 * 102.32020 * 267.72222 * 17 14 13 19 19 C 1.51371 * 105.17298 * 333.46911 * 18 17 14 20 20 C 1.38499 * 130.39330 * 197.15357 * 19 18 17 21 21 C 1.38101 * 120.21771 * 180.02562 * 20 19 18 22 22 C 1.38256 * 119.93243 * 359.97438 * 21 20 19 23 23 C 1.38100 * 119.93647 * 0.02562 * 22 21 20 24 24 C 1.38221 * 109.75919 * 17.17313 * 19 18 17 25 25 H 0.97001 * 120.00035 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46967 * 59.99980 * 9 7 2 27 27 H 1.09001 * 109.47328 * 300.00680 * 9 7 2 28 28 H 1.08994 * 109.47477 * 59.99804 * 11 10 9 29 29 H 1.09000 * 109.46940 * 299.99762 * 11 10 9 30 30 H 1.09000 * 109.46685 * 305.00094 * 12 11 10 31 31 H 1.08998 * 109.47279 * 184.99882 * 12 11 10 32 32 H 1.00895 * 111.00636 * 298.20124 * 13 12 11 33 33 H 1.09003 * 109.47371 * 176.46731 * 15 14 13 34 34 H 1.09005 * 109.47162 * 296.46209 * 15 14 13 35 35 H 0.96696 * 114.00041 * 180.02562 * 16 15 14 36 36 H 1.09003 * 111.02025 * 149.44396 * 17 14 13 37 37 H 1.09000 * 110.68772 * 25.85075 * 17 14 13 38 38 H 1.09000 * 110.30678 * 214.54159 * 18 17 14 39 39 H 1.08997 * 110.30273 * 92.38640 * 18 17 14 40 40 H 1.08005 * 119.89105 * 0.02562 * 20 19 18 41 41 H 1.07999 * 120.03376 * 179.97438 * 21 20 19 42 42 H 1.07998 * 120.03331 * 180.02562 * 22 21 20 43 43 H 1.08004 * 119.89381 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6480 -5.9562 -0.0004 13 7 3.4072 -5.8879 1.2553 14 6 4.3662 -6.9964 1.3516 15 6 5.2590 -7.0369 0.1097 16 8 5.9155 -5.7772 -0.0462 17 6 3.6218 -8.3400 1.5198 18 6 3.5562 -8.4901 3.0545 19 6 4.7421 -7.7100 3.5800 20 6 5.3628 -7.7458 4.8176 21 6 6.4466 -6.9296 5.0755 22 6 6.9145 -6.0740 4.0955 23 6 6.2970 -6.0369 2.8608 24 6 5.2097 -6.8543 2.6004 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 0.9452 -4.9822 -0.8913 29 1 0.9446 -4.9827 0.8887 30 1 3.3221 -5.7955 -0.8417 31 1 2.1820 -6.9375 -0.0904 32 1 3.8729 -4.9978 1.3484 33 1 6.0048 -7.8236 0.2238 34 1 4.6485 -7.2399 -0.7702 35 1 6.4991 -5.7305 -0.8158 36 1 4.1870 -9.1586 1.0742 37 1 2.6206 -8.2815 1.0930 38 1 3.6393 -9.5399 3.3357 39 1 2.6267 -8.0679 3.4363 40 1 4.9981 -8.4143 5.5835 41 1 6.9280 -6.9597 6.0418 42 1 7.7622 -5.4353 4.2953 43 1 6.6634 -5.3685 2.0956 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590167797.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:03 Heat of formation + Delta-G solvation = -95.521813 kcal Electronic energy + Delta-G solvation = -23451.738525 eV Core-core repulsion = 20074.440428 eV Total energy + Delta-G solvation = -3377.298097 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.49421 -38.97178 -38.18440 -36.67084 -35.16472 -34.48458 -32.23444 -30.40931 -29.76904 -29.05241 -27.85207 -24.98987 -24.53421 -23.76260 -22.75523 -21.71554 -20.28387 -18.67532 -18.22576 -17.84135 -17.39545 -16.82721 -16.63011 -16.39968 -16.11947 -15.93276 -15.69099 -15.25117 -14.86889 -14.72209 -14.13534 -13.91003 -13.81736 -13.47954 -13.37586 -13.21330 -12.98249 -12.80946 -12.63637 -12.54167 -12.24670 -12.18692 -12.01082 -11.86379 -11.79707 -11.52378 -11.25708 -10.91775 -10.83088 -10.22110 -9.72268 -9.49774 -9.20928 -8.32981 -6.45128 0.46994 0.54589 1.38417 1.40187 1.54914 2.34135 2.79879 3.00720 3.20454 3.24449 3.34511 3.54554 3.69689 4.02675 4.18271 4.21111 4.23239 4.30749 4.36700 4.43710 4.47044 4.50602 4.53958 4.64934 4.72433 4.77229 4.82789 4.89244 4.95655 4.98162 5.06887 5.17036 5.18166 5.25234 5.35794 5.54383 5.60611 5.67334 5.83147 5.95692 6.13513 6.21643 6.36841 6.54084 6.82798 6.85181 7.26971 8.79763 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017109 B = 0.003765 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.186889 B = 7435.074790 C = 8017.285810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.983 3.017 4 H -0.266 1.266 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.212 3.788 10 O -0.407 6.407 11 C 0.056 3.944 12 C 0.075 3.925 13 N -0.670 5.670 14 C 0.150 3.850 15 C 0.053 3.947 16 O -0.584 6.584 17 C -0.105 4.105 18 C -0.071 4.071 19 C -0.097 4.097 20 C -0.124 4.124 21 C -0.120 4.120 22 C -0.141 4.141 23 C -0.107 4.107 24 C -0.101 4.101 25 H 0.271 0.729 26 H -0.014 1.014 27 H -0.018 1.018 28 H 0.049 0.951 29 H 0.039 0.961 30 H 0.035 0.965 31 H 0.109 0.891 32 H 0.342 0.658 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.392 0.608 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.140 0.860 41 H 0.146 0.854 42 H 0.135 0.865 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.243 -21.004 4.768 24.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.191 4.191 3 Si 0.806 3.194 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.584 4.584 8 H 0.077 0.923 9 C 0.137 3.863 10 O -0.327 6.327 11 C -0.021 4.021 12 C -0.054 4.054 13 N -0.301 5.301 14 C 0.059 3.941 15 C -0.026 4.026 16 O -0.392 6.392 17 C -0.142 4.142 18 C -0.108 4.108 19 C -0.098 4.098 20 C -0.142 4.142 21 C -0.137 4.137 22 C -0.159 4.159 23 C -0.125 4.125 24 C -0.102 4.102 25 H 0.080 0.920 26 H 0.003 0.997 27 H 0.000 1.000 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.127 0.873 32 H 0.160 0.840 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.241 0.759 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.158 0.842 41 H 0.164 0.836 42 H 0.153 0.847 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 11.444 -21.058 5.654 24.625 hybrid contribution 0.730 1.315 -1.233 1.945 sum 12.174 -19.743 4.421 23.612 Atomic orbital electron populations 1.70078 1.07744 1.28570 1.50617 1.25952 0.95956 1.03346 0.93895 0.85143 0.78600 0.77342 0.78354 1.18979 1.19420 1.19637 1.21398 0.93971 0.90917 1.52095 0.92275 1.19773 0.88568 0.84770 0.93220 1.87796 1.35377 1.14361 1.95164 1.22604 0.96059 0.84006 0.99451 1.21964 0.94762 0.97713 0.90980 1.60686 1.28154 1.06021 1.35205 1.20706 0.89334 0.93226 0.90822 1.22933 0.95602 0.85979 0.98133 1.86489 1.64771 1.35191 1.52701 1.22428 1.01350 0.93959 0.96511 1.20983 0.95178 1.00068 0.94583 1.20935 0.97017 0.97806 0.94028 1.20913 0.96536 1.00636 0.96141 1.21368 0.96765 0.95771 0.99842 1.21320 1.01113 1.00134 0.93295 1.20963 0.95722 0.98274 0.97578 1.20442 0.95899 0.97665 0.96176 0.92033 0.99672 1.00044 0.93323 0.94229 0.94669 0.87296 0.83978 0.92321 0.92461 0.75862 0.88596 0.89172 0.88585 0.90498 0.84229 0.83612 0.84692 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.29 13.29 21.45 0.28 -57.00 16 2 C 0.01 0.41 5.46 84.65 0.46 0.87 16 3 Si 0.98 45.64 29.54 68.60 2.03 47.66 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.55 -33.74 9.43 25.60 0.24 -33.50 16 8 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 9 C 0.21 12.42 5.69 71.23 0.41 12.83 16 10 O -0.41 -20.78 9.95 -148.98 -1.48 -22.27 16 11 C 0.06 2.18 6.28 71.98 0.45 2.64 16 12 C 0.07 2.25 5.20 86.30 0.45 2.70 16 13 N -0.67 -21.26 6.04 -470.28 -2.84 -24.10 16 14 C 0.15 3.71 0.57 3.51 0.00 3.72 16 15 C 0.05 1.15 5.15 71.98 0.37 1.52 16 16 O -0.58 -14.64 11.32 -148.98 -1.69 -16.32 16 17 C -0.10 -1.94 6.08 31.56 0.19 -1.75 16 18 C -0.07 -1.36 6.77 30.52 0.21 -1.15 16 19 C -0.10 -2.31 6.14 -19.59 -0.12 -2.43 16 20 C -0.12 -2.62 10.04 22.30 0.22 -2.40 16 21 C -0.12 -2.46 10.05 22.24 0.22 -2.24 16 22 C -0.14 -3.31 10.05 22.24 0.22 -3.09 16 23 C -0.11 -2.95 9.51 22.30 0.21 -2.74 16 24 C -0.10 -2.72 5.13 -19.59 -0.10 -2.82 16 25 H 0.27 15.36 8.31 -92.71 -0.77 14.58 16 26 H -0.01 -0.88 8.14 -2.39 -0.02 -0.89 16 27 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 28 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.04 1.09 6.72 -2.39 -0.02 1.07 16 31 H 0.11 2.50 6.32 -2.39 -0.02 2.49 16 32 H 0.34 13.39 8.08 -89.70 -0.72 12.66 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 1.13 6.76 -2.38 -0.02 1.11 16 35 H 0.39 6.47 9.12 -74.06 -0.68 5.80 16 36 H 0.10 1.33 7.93 -2.39 -0.02 1.31 16 37 H 0.09 1.58 6.30 -2.39 -0.02 1.57 16 38 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 41 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 42 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 43 H 0.12 3.42 6.61 -2.91 -0.02 3.40 16 Total: -1.00 -73.32 348.11 -0.63 -73.95 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: -0.38 Total: 25.92 kcal Atomic # 6 Polarization: -31.29 SS G_CDS: 3.44 Total: -27.84 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -2.56 Total: -81.11 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -3.17 Total: -38.59 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -73.32 -0.63 -73.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590167797.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.567 kcal (2) G-P(sol) polarization free energy of solvation -73.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds