Wall clock time and date at job start Tue Mar 31 2020 07:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99760 * 2 1 4 4 H 1.48509 * 109.46808 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47624 * 300.00095 * 3 2 1 6 6 H 1.48500 * 109.47233 * 60.00261 * 3 2 1 7 7 C 1.37871 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00028 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00187 * 359.97438 * 7 2 1 10 10 O 1.42898 * 109.46883 * 180.02562 * 9 7 2 11 11 C 1.42900 * 113.99736 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47147 * 179.97438 * 11 10 9 13 13 N 1.46894 * 109.47358 * 64.99989 * 12 11 10 14 14 C 1.46899 * 111.00520 * 185.54715 * 13 12 11 15 15 C 1.53000 * 110.26857 * 306.88530 * 14 13 12 16 16 O 1.42905 * 109.46931 * 303.61893 * 15 14 13 17 17 C 1.54345 * 110.29902 * 69.05959 * 14 13 12 18 18 C 1.54341 * 102.39151 * 92.58783 * 17 14 13 19 19 C 1.51372 * 105.17938 * 26.32534 * 18 17 14 20 20 C 1.38499 * 130.39328 * 162.75607 * 19 18 17 21 21 C 1.38098 * 120.21417 * 180.02562 * 20 19 18 22 22 C 1.38251 * 119.93403 * 0.02562 * 21 20 19 23 23 C 1.38100 * 119.93965 * 359.97438 * 22 21 20 24 24 C 1.38220 * 109.75408 * 342.83931 * 19 18 17 25 25 H 0.97002 * 119.99789 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46964 * 60.00401 * 9 7 2 27 27 H 1.08996 * 109.47048 * 300.00360 * 9 7 2 28 28 H 1.09006 * 109.47281 * 59.99936 * 11 10 9 29 29 H 1.08995 * 109.47395 * 299.99924 * 11 10 9 30 30 H 1.09006 * 109.47399 * 305.00008 * 12 11 10 31 31 H 1.09009 * 109.47187 * 184.99926 * 12 11 10 32 32 H 1.00903 * 110.99766 * 61.58939 * 13 12 11 33 33 H 1.08996 * 109.47111 * 63.61659 * 15 14 13 34 34 H 1.08997 * 109.47564 * 183.62413 * 15 14 13 35 35 H 0.96697 * 113.99909 * 179.97438 * 16 15 14 36 36 H 1.09003 * 110.82211 * 210.80822 * 17 14 13 37 37 H 1.08994 * 110.82377 * 334.35950 * 17 14 13 38 38 H 1.09000 * 110.30442 * 145.26932 * 18 17 14 39 39 H 1.08999 * 110.30135 * 267.31886 * 18 17 14 40 40 H 1.07994 * 119.89116 * 0.33957 * 20 19 18 41 41 H 1.07997 * 120.03428 * 179.97438 * 21 20 19 42 42 H 1.08009 * 120.03130 * 179.97438 * 22 21 20 43 43 H 1.08002 * 119.89624 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6480 -5.9562 -0.0006 13 7 3.4090 -5.8877 1.2539 14 6 4.5413 -6.8233 1.2347 15 6 4.0586 -8.2325 0.8852 16 8 3.0489 -8.6339 1.8134 17 6 5.6070 -6.3535 0.2219 18 6 6.5517 -5.5089 1.1029 19 6 6.3983 -6.0705 2.5002 20 6 7.2062 -5.9328 3.6166 21 6 6.8607 -6.5465 4.8045 22 6 5.7050 -7.3015 4.8803 23 6 4.8981 -7.4401 3.7682 24 6 5.2433 -6.8260 2.5757 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 0.9446 -4.9827 -0.8897 29 1 0.9452 -4.9822 0.8902 30 1 3.3210 -5.7957 -0.8430 31 1 2.1819 -6.9375 -0.0898 32 1 2.8117 -6.0591 2.0489 33 1 3.6465 -8.2355 -0.1238 34 1 4.8969 -8.9272 0.9375 35 1 2.6958 -9.5195 1.6517 36 1 6.1355 -7.2047 -0.2074 37 1 5.1559 -5.7419 -0.5595 38 1 7.5819 -5.6156 0.7632 39 1 6.2535 -4.4607 1.0805 40 1 8.1067 -5.3393 3.5594 41 1 7.4930 -6.4374 5.6732 42 1 5.4335 -7.7825 5.8085 43 1 3.9957 -8.0304 3.8281 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590167801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:14 Heat of formation + Delta-G solvation = -68.711492 kcal Electronic energy + Delta-G solvation = -23458.462919 eV Core-core repulsion = 20082.327405 eV Total energy + Delta-G solvation = -3376.135514 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.56346 -37.78096 -36.61458 -35.73719 -33.70922 -32.55655 -31.20999 -29.18017 -28.70916 -27.40840 -26.33330 -24.03300 -22.81346 -22.21678 -21.58643 -20.73070 -19.34616 -17.45135 -16.88762 -16.25789 -15.89755 -15.63655 -15.26389 -15.18880 -14.76389 -14.64219 -14.28389 -13.87844 -13.62892 -13.28044 -12.96223 -12.86830 -12.50150 -12.45683 -12.22646 -11.79390 -11.48735 -11.32087 -11.31295 -10.99782 -10.95287 -10.75668 -10.72985 -10.58745 -10.38130 -10.08537 -9.92408 -8.99897 -8.78334 -8.72154 -8.52518 -8.07217 -8.02988 -6.03862 -4.04354 1.40103 1.48266 3.33871 3.40074 3.47205 3.72861 3.99622 4.35970 4.41814 4.48199 4.60441 4.88831 4.95958 5.03880 5.06803 5.18489 5.22046 5.29383 5.32799 5.39846 5.48731 5.60155 5.63664 5.70535 5.80540 5.86515 5.94214 6.07035 6.11972 6.15646 6.24136 6.30148 6.37973 6.52336 6.57260 6.78170 7.06095 7.19172 7.27746 7.39169 7.52496 7.67225 7.88527 8.25136 8.70738 9.10999 9.60329 11.07989 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016217 B = 0.003919 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.146747 B = 7142.219601 C = 8022.018022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.508 4.508 8 H 0.067 0.933 9 C 0.193 3.807 10 O -0.380 6.380 11 C 0.068 3.932 12 C 0.063 3.937 13 N -0.649 5.649 14 C 0.160 3.840 15 C 0.049 3.951 16 O -0.566 6.566 17 C -0.108 4.108 18 C -0.076 4.076 19 C -0.076 4.076 20 C -0.117 4.117 21 C -0.117 4.117 22 C -0.134 4.134 23 C -0.089 4.089 24 C -0.083 4.083 25 H 0.262 0.738 26 H 0.001 0.999 27 H 0.003 0.997 28 H 0.038 0.962 29 H 0.034 0.966 30 H 0.077 0.923 31 H 0.036 0.964 32 H 0.347 0.653 33 H 0.051 0.949 34 H 0.047 0.953 35 H 0.376 0.624 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.501 -20.078 4.212 23.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.546 4.546 8 H 0.085 0.915 9 C 0.119 3.881 10 O -0.299 6.299 11 C -0.010 4.010 12 C -0.066 4.066 13 N -0.279 5.279 14 C 0.068 3.932 15 C -0.031 4.031 16 O -0.371 6.371 17 C -0.146 4.146 18 C -0.113 4.113 19 C -0.077 4.077 20 C -0.135 4.135 21 C -0.135 4.135 22 C -0.152 4.152 23 C -0.107 4.107 24 C -0.083 4.083 25 H 0.072 0.928 26 H 0.019 0.981 27 H 0.021 0.979 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.167 0.833 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.223 0.777 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.111 0.889 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 12.035 -18.768 4.237 22.694 hybrid contribution -0.674 -0.555 -0.028 0.873 sum 11.361 -19.322 4.209 22.806 Atomic orbital electron populations 1.69981 1.06099 1.26875 1.51101 1.24943 0.94945 0.99378 0.95335 0.86308 0.80093 0.82740 0.77524 1.19467 1.20944 1.20905 1.21104 0.94101 0.89355 1.50032 0.91499 1.20174 0.88886 0.83986 0.95056 1.87944 1.34605 1.12343 1.95013 1.22190 0.93873 0.86257 0.98726 1.22048 0.95696 0.95787 0.93100 1.60523 1.11495 1.51082 1.04848 1.20470 0.92325 0.88237 0.92156 1.23005 0.90599 0.97239 0.92212 1.86460 1.57114 1.37876 1.55673 1.22341 0.95286 0.99556 0.97436 1.20991 0.99270 1.00923 0.90121 1.20636 0.94937 0.96413 0.95710 1.20584 0.99915 1.00797 0.92231 1.21006 0.97241 0.97921 0.97317 1.21010 0.95518 1.00420 0.98206 1.20801 0.99503 0.98932 0.91470 1.20239 0.95497 0.98200 0.94370 0.92845 0.98086 0.97945 0.94409 0.94799 0.90490 0.94578 0.83332 0.93109 0.93523 0.77718 0.91171 0.88991 0.91095 0.88868 0.86440 0.86266 0.86300 0.85507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.60 13.29 55.43 0.74 -26.86 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 22.39 29.54 -169.99 -5.02 17.36 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.51 -15.39 9.43 -34.44 -0.32 -15.71 16 8 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 9 C 0.19 5.49 5.69 36.01 0.20 5.69 16 10 O -0.38 -9.46 10.27 -35.23 -0.36 -9.83 16 11 C 0.07 1.30 6.26 37.16 0.23 1.53 16 12 C 0.06 0.95 5.16 -3.83 -0.02 0.93 16 13 N -0.65 -10.16 5.98 -100.09 -0.60 -10.76 16 14 C 0.16 2.05 0.57 -131.72 -0.07 1.98 16 15 C 0.05 0.51 5.12 37.16 0.19 0.70 16 16 O -0.57 -5.59 11.31 -35.23 -0.40 -5.99 16 17 C -0.11 -1.30 6.07 -25.32 -0.15 -1.45 16 18 C -0.08 -0.96 6.77 -26.85 -0.18 -1.14 16 19 C -0.08 -1.03 6.14 -104.20 -0.64 -1.67 16 20 C -0.12 -1.43 10.04 -39.54 -0.40 -1.83 16 21 C -0.12 -1.31 10.05 -39.63 -0.40 -1.71 16 22 C -0.13 -1.54 10.05 -39.63 -0.40 -1.93 16 23 C -0.09 -1.13 9.51 -39.54 -0.38 -1.51 16 24 C -0.08 -1.12 5.12 -104.21 -0.53 -1.65 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 27 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.16 6.36 -51.93 -0.33 0.83 16 31 H 0.04 0.47 6.69 -51.92 -0.35 0.12 16 32 H 0.35 5.65 8.44 -39.29 -0.33 5.32 16 33 H 0.05 0.49 6.75 -51.93 -0.35 0.14 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.38 2.08 9.12 45.56 0.42 2.50 16 36 H 0.07 0.68 7.92 -51.93 -0.41 0.27 16 37 H 0.09 1.20 6.34 -51.93 -0.33 0.87 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 42 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 43 H 0.13 1.54 6.61 -52.49 -0.35 1.19 16 LS Contribution 348.67 15.07 5.25 5.25 Total: -1.00 -33.86 348.67 -9.16 -43.02 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -5.80 Total: 4.05 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -2.97 Total: -16.25 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.14 Total: -37.62 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.76 Total: -15.82 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.86 -9.16 -43.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590167801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.694 kcal (2) G-P(sol) polarization free energy of solvation -33.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds