Wall clock time and date at job start Tue Mar 31 2020 07:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99760 * 2 1 4 4 H 1.48509 * 109.46808 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47624 * 300.00095 * 3 2 1 6 6 H 1.48500 * 109.47233 * 60.00261 * 3 2 1 7 7 C 1.37871 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00028 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00187 * 359.97438 * 7 2 1 10 10 O 1.42898 * 109.46883 * 180.02562 * 9 7 2 11 11 C 1.42900 * 113.99736 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47147 * 179.97438 * 11 10 9 13 13 N 1.46894 * 109.47358 * 64.99989 * 12 11 10 14 14 C 1.46899 * 111.00520 * 185.54715 * 13 12 11 15 15 C 1.53000 * 110.26857 * 306.88530 * 14 13 12 16 16 O 1.42905 * 109.46931 * 303.61893 * 15 14 13 17 17 C 1.54345 * 110.29902 * 69.05959 * 14 13 12 18 18 C 1.54341 * 102.39151 * 92.58783 * 17 14 13 19 19 C 1.51372 * 105.17938 * 26.32534 * 18 17 14 20 20 C 1.38499 * 130.39328 * 162.75607 * 19 18 17 21 21 C 1.38098 * 120.21417 * 180.02562 * 20 19 18 22 22 C 1.38251 * 119.93403 * 0.02562 * 21 20 19 23 23 C 1.38100 * 119.93965 * 359.97438 * 22 21 20 24 24 C 1.38220 * 109.75408 * 342.83931 * 19 18 17 25 25 H 0.97002 * 119.99789 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46964 * 60.00401 * 9 7 2 27 27 H 1.08996 * 109.47048 * 300.00360 * 9 7 2 28 28 H 1.09006 * 109.47281 * 59.99936 * 11 10 9 29 29 H 1.08995 * 109.47395 * 299.99924 * 11 10 9 30 30 H 1.09006 * 109.47399 * 305.00008 * 12 11 10 31 31 H 1.09009 * 109.47187 * 184.99926 * 12 11 10 32 32 H 1.00903 * 110.99766 * 61.58939 * 13 12 11 33 33 H 1.08996 * 109.47111 * 63.61659 * 15 14 13 34 34 H 1.08997 * 109.47564 * 183.62413 * 15 14 13 35 35 H 0.96697 * 113.99909 * 179.97438 * 16 15 14 36 36 H 1.09003 * 110.82211 * 210.80822 * 17 14 13 37 37 H 1.08994 * 110.82377 * 334.35950 * 17 14 13 38 38 H 1.09000 * 110.30442 * 145.26932 * 18 17 14 39 39 H 1.08999 * 110.30135 * 267.31886 * 18 17 14 40 40 H 1.07994 * 119.89116 * 0.33957 * 20 19 18 41 41 H 1.07997 * 120.03428 * 179.97438 * 21 20 19 42 42 H 1.08009 * 120.03130 * 179.97438 * 22 21 20 43 43 H 1.08002 * 119.89624 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6480 -5.9562 -0.0006 13 7 3.4090 -5.8877 1.2539 14 6 4.5413 -6.8233 1.2347 15 6 4.0586 -8.2325 0.8852 16 8 3.0489 -8.6339 1.8134 17 6 5.6070 -6.3535 0.2219 18 6 6.5517 -5.5089 1.1029 19 6 6.3983 -6.0705 2.5002 20 6 7.2062 -5.9328 3.6166 21 6 6.8607 -6.5465 4.8045 22 6 5.7050 -7.3015 4.8803 23 6 4.8981 -7.4401 3.7682 24 6 5.2433 -6.8260 2.5757 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 0.9446 -4.9827 -0.8897 29 1 0.9452 -4.9822 0.8902 30 1 3.3210 -5.7957 -0.8430 31 1 2.1819 -6.9375 -0.0898 32 1 2.8117 -6.0591 2.0489 33 1 3.6465 -8.2355 -0.1238 34 1 4.8969 -8.9272 0.9375 35 1 2.6958 -9.5195 1.6517 36 1 6.1355 -7.2047 -0.2074 37 1 5.1559 -5.7419 -0.5595 38 1 7.5819 -5.6156 0.7632 39 1 6.2535 -4.4607 1.0805 40 1 8.1067 -5.3393 3.5594 41 1 7.4930 -6.4374 5.6732 42 1 5.4335 -7.7825 5.8085 43 1 3.9957 -8.0304 3.8281 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590167801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:13 Heat of formation + Delta-G solvation = -93.215042 kcal Electronic energy + Delta-G solvation = -23459.525473 eV Core-core repulsion = 20082.327405 eV Total energy + Delta-G solvation = -3377.198068 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.50282 -38.93353 -38.17136 -36.65442 -35.16384 -34.51659 -32.23845 -30.40341 -29.78609 -29.02483 -27.83816 -24.99395 -24.45643 -23.81095 -22.80619 -21.71646 -20.33356 -18.65322 -18.19450 -17.83529 -17.48825 -16.71343 -16.60149 -16.37187 -16.11515 -15.93133 -15.64731 -15.20985 -14.81233 -14.75804 -14.14293 -13.97149 -13.79747 -13.54062 -13.39884 -13.14732 -13.05578 -12.81273 -12.66955 -12.51787 -12.25850 -12.19076 -11.95963 -11.87780 -11.71979 -11.53985 -11.23643 -10.88765 -10.83279 -10.17657 -9.70922 -9.48237 -9.13966 -8.31258 -6.42967 0.47425 0.54987 1.39298 1.41136 1.56007 2.35664 2.79904 3.02378 3.18427 3.26881 3.36700 3.53278 3.66408 4.01384 4.18434 4.22179 4.24779 4.29749 4.32316 4.44113 4.46326 4.50089 4.53656 4.66407 4.69812 4.75286 4.84162 4.89932 4.93046 4.95599 5.07294 5.15841 5.20298 5.25265 5.36093 5.56671 5.61401 5.66608 5.84033 5.98574 6.14090 6.22164 6.44422 6.59196 6.87100 6.87967 7.29355 8.81528 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016217 B = 0.003919 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.146747 B = 7142.219601 C = 8022.018022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.983 3.017 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.209 3.791 10 O -0.394 6.394 11 C 0.058 3.942 12 C 0.076 3.924 13 N -0.671 5.671 14 C 0.156 3.844 15 C 0.057 3.943 16 O -0.580 6.580 17 C -0.107 4.107 18 C -0.076 4.076 19 C -0.099 4.099 20 C -0.128 4.128 21 C -0.120 4.120 22 C -0.138 4.138 23 C -0.101 4.101 24 C -0.099 4.099 25 H 0.270 0.730 26 H -0.015 1.015 27 H -0.021 1.021 28 H 0.048 0.952 29 H 0.031 0.969 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.340 0.660 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.395 0.605 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.132 0.868 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.805 -20.708 4.504 24.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.192 4.192 3 Si 0.805 3.195 4 H -0.189 1.189 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.581 4.581 8 H 0.077 0.923 9 C 0.133 3.867 10 O -0.313 6.313 11 C -0.019 4.019 12 C -0.053 4.053 13 N -0.302 5.302 14 C 0.065 3.935 15 C -0.023 4.023 16 O -0.388 6.388 17 C -0.145 4.145 18 C -0.113 4.113 19 C -0.099 4.099 20 C -0.146 4.146 21 C -0.137 4.137 22 C -0.156 4.156 23 C -0.119 4.119 24 C -0.100 4.100 25 H 0.079 0.921 26 H 0.002 0.998 27 H -0.003 1.003 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.158 0.842 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.245 0.755 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.110 0.890 39 H 0.082 0.918 40 H 0.150 0.850 41 H 0.163 0.837 42 H 0.160 0.840 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 13.334 -19.442 4.521 24.005 hybrid contribution -1.111 -0.451 -0.056 1.201 sum 12.223 -19.892 4.465 23.770 Atomic orbital electron populations 1.70083 1.07754 1.28503 1.50823 1.25954 0.95951 1.03347 0.93964 0.85147 0.78646 0.77356 0.78319 1.18929 1.19409 1.19711 1.21396 0.93974 0.90895 1.51811 0.92274 1.19788 0.88704 0.85130 0.93034 1.87906 1.34576 1.13820 1.95027 1.22556 0.95629 0.84707 0.99054 1.21918 0.94742 0.95326 0.93268 1.60484 1.12083 1.53133 1.04479 1.20551 0.91350 0.89282 0.92307 1.22845 0.91239 0.95722 0.92463 1.86422 1.57077 1.39547 1.55791 1.22363 0.95157 1.00152 0.96793 1.20961 1.00609 0.99258 0.90461 1.20870 0.95618 0.97079 0.96352 1.20895 1.00419 1.01006 0.92296 1.21361 0.97417 0.97116 0.97854 1.21353 0.95311 1.00161 0.98734 1.20959 0.99930 0.99251 0.91750 1.20431 0.95784 0.98762 0.94974 0.92093 0.99772 1.00308 0.93384 0.95064 0.90264 0.91561 0.84161 0.92203 0.92269 0.75503 0.88496 0.90441 0.89046 0.91798 0.84960 0.83666 0.84044 0.85323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 2 C 0.01 0.35 5.46 84.65 0.46 0.82 16 3 Si 0.98 45.81 29.54 68.60 2.03 47.84 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.54 -33.72 9.43 25.60 0.24 -33.48 16 8 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 9 C 0.21 12.30 5.69 71.24 0.41 12.71 16 10 O -0.39 -20.26 10.27 -148.98 -1.53 -21.79 16 11 C 0.06 2.26 6.26 71.98 0.45 2.71 16 12 C 0.08 2.28 5.16 86.30 0.44 2.73 16 13 N -0.67 -21.07 5.98 -470.56 -2.82 -23.88 16 14 C 0.16 3.89 0.57 3.45 0.00 3.89 16 15 C 0.06 1.06 5.12 71.98 0.37 1.43 16 16 O -0.58 -10.44 11.31 -148.98 -1.69 -12.12 16 17 C -0.11 -2.49 6.07 31.51 0.19 -2.30 16 18 C -0.08 -1.91 6.77 30.52 0.21 -1.70 16 19 C -0.10 -2.61 6.14 -19.59 -0.12 -2.73 16 20 C -0.13 -2.99 10.04 22.30 0.22 -2.77 16 21 C -0.12 -2.48 10.05 22.24 0.22 -2.26 16 22 C -0.14 -2.95 10.05 22.24 0.22 -2.73 16 23 C -0.10 -2.47 9.51 22.30 0.21 -2.26 16 24 C -0.10 -2.63 5.12 -19.59 -0.10 -2.73 16 25 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 26 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 27 H -0.02 -1.29 8.14 -2.39 -0.02 -1.31 16 28 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.08 2.35 6.36 -2.38 -0.02 2.33 16 31 H 0.07 1.60 6.69 -2.38 -0.02 1.59 16 32 H 0.34 11.21 8.44 -89.69 -0.76 10.45 16 33 H 0.06 1.00 6.75 -2.39 -0.02 0.98 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.40 3.51 9.12 -74.06 -0.68 2.83 16 36 H 0.10 1.69 7.92 -2.39 -0.02 1.67 16 37 H 0.08 2.02 6.34 -2.39 -0.02 2.00 16 38 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 41 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 42 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 43 H 0.13 3.02 6.61 -2.91 -0.02 3.00 16 Total: -1.00 -73.79 348.67 -0.70 -74.49 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: -0.41 Total: 21.45 kcal Atomic # 6 Polarization: -32.10 SS G_CDS: 3.44 Total: -28.67 kcal Atomic # 7 Polarization: -78.67 SS G_CDS: -2.53 Total: -81.20 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -3.22 Total: -33.92 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -73.79 -0.70 -74.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590167801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.727 kcal (2) G-P(sol) polarization free energy of solvation -73.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds