Wall clock time and date at job start Tue Mar 31 2020 07:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99967 * 2 1 4 4 H 1.48500 * 109.47087 * 239.99372 * 3 2 1 5 5 H 1.48506 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47461 * 119.99471 * 3 2 1 7 7 C 1.37879 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00209 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99959 * 0.02562 * 7 2 1 10 10 O 1.42897 * 109.47077 * 179.97438 * 9 7 2 11 11 C 1.42900 * 113.99771 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46831 * 180.02562 * 11 10 9 13 13 N 1.46904 * 109.47471 * 64.99994 * 12 11 10 14 14 C 1.46433 * 110.99865 * 55.60263 * 13 12 11 15 15 C 1.53385 * 108.64366 * 181.09179 * 14 13 12 16 16 H 1.09003 * 109.81303 * 308.64146 * 15 14 13 17 17 C 1.52994 * 109.76894 * 187.88447 * 15 14 13 18 18 O 1.42897 * 109.47394 * 176.52557 * 17 15 14 19 19 C 1.53037 * 107.92922 * 68.27347 * 15 14 13 20 20 C 1.50802 * 109.66241 * 312.73925 * 19 15 14 21 21 C 1.38616 * 118.12812 * 195.44335 * 20 19 15 22 22 C 1.38058 * 120.49098 * 180.23832 * 21 20 19 23 23 C 1.38321 * 119.88569 * 0.02788 * 22 21 20 24 24 C 1.37806 * 119.95106 * 359.88543 * 23 22 21 25 25 C 1.38376 * 122.01386 * 15.49755 * 20 19 15 26 26 H 0.97001 * 120.00201 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46454 * 60.00004 * 9 7 2 28 28 H 1.08994 * 109.47352 * 300.00323 * 9 7 2 29 29 H 1.09001 * 109.47563 * 60.00165 * 11 10 9 30 30 H 1.09008 * 109.46956 * 299.99722 * 11 10 9 31 31 H 1.08998 * 109.47188 * 304.99731 * 12 11 10 32 32 H 1.09003 * 109.46894 * 184.99328 * 12 11 10 33 33 H 1.09004 * 109.60068 * 61.34960 * 14 13 12 34 34 H 1.08994 * 109.61419 * 300.84448 * 14 13 12 35 35 H 1.08997 * 109.47730 * 56.51948 * 17 15 14 36 36 H 1.09003 * 109.47316 * 296.52216 * 17 15 14 37 37 H 0.96701 * 114.00555 * 179.97438 * 18 17 15 38 38 H 1.09002 * 109.44201 * 72.80254 * 19 15 14 39 39 H 1.09007 * 109.43943 * 192.72243 * 19 15 14 40 40 H 1.07995 * 119.75372 * 0.21668 * 21 20 19 41 41 H 1.07996 * 120.05671 * 180.02562 * 22 21 20 42 42 H 1.08000 * 120.01877 * 179.86416 * 23 22 21 43 43 H 1.07993 * 119.78578 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6481 -5.9561 0.0006 13 7 3.4073 -5.8879 1.2565 14 6 2.5173 -5.9959 2.4142 15 6 3.3597 -5.8911 3.6918 16 1 4.1896 -6.5962 3.6459 17 6 2.4889 -6.1957 4.9123 18 8 3.2967 -6.1758 6.0908 19 6 3.8992 -4.4620 3.7844 20 6 4.4798 -4.0516 2.4545 21 6 5.3008 -2.9354 2.4163 22 6 5.8545 -2.5135 1.2241 23 6 5.5893 -3.2074 0.0573 24 6 4.7754 -4.3190 0.0877 25 6 4.2148 -4.7520 1.2909 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5570 -0.8898 28 1 0.6240 -2.5567 0.8902 29 1 0.9453 -4.9823 -0.8903 30 1 0.9447 -4.9827 0.8898 31 1 3.3223 -5.7955 -0.8407 32 1 2.1822 -6.9374 -0.0892 33 1 2.0040 -6.9572 2.3924 34 1 1.7865 -5.1876 2.3906 35 1 2.0359 -7.1805 4.7988 36 1 1.7051 -5.4428 4.9964 37 1 2.8091 -6.3608 6.9051 38 1 3.0879 -3.7844 4.0507 39 1 4.6756 -4.4161 4.5482 40 1 5.5086 -2.3916 3.3259 41 1 6.4935 -1.6431 1.2025 42 1 6.0195 -2.8779 -0.8769 43 1 4.5705 -4.8590 -0.8248 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590183988.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:26 Heat of formation + Delta-G solvation = -61.569259 kcal Electronic energy + Delta-G solvation = -24591.089572 eV Core-core repulsion = 21215.263768 eV Total energy + Delta-G solvation = -3375.825804 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.42595 -37.34961 -37.07954 -35.77621 -34.06723 -32.61150 -30.48368 -29.79977 -28.57222 -26.82018 -25.71549 -24.61842 -22.70346 -22.22684 -21.56385 -20.46755 -19.09128 -17.56075 -16.59036 -16.36508 -16.01684 -15.69523 -15.36869 -15.06481 -14.45239 -14.26370 -13.94756 -13.78563 -13.65122 -13.34952 -13.12210 -12.70551 -12.54507 -12.35094 -11.78455 -11.73458 -11.48962 -11.29133 -11.13153 -10.91587 -10.83181 -10.70862 -10.66925 -10.40617 -10.10792 -10.03967 -9.99632 -9.32967 -9.08362 -8.79395 -8.16374 -8.01677 -7.09310 -6.08298 -4.08404 2.06229 2.10894 3.33099 3.35530 3.39858 3.79061 4.25305 4.36624 4.54904 4.78990 4.83874 4.94500 5.10057 5.26874 5.28637 5.35235 5.42816 5.47863 5.54731 5.61325 5.65511 5.75254 5.76379 5.84471 5.94844 5.95728 6.07966 6.12447 6.15927 6.24913 6.39881 6.45361 6.59499 6.78365 7.04579 7.08122 7.22334 7.29691 7.42135 7.47919 7.52504 7.83733 7.86409 8.17517 8.57935 9.05224 9.55995 11.03485 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014554 B = 0.005511 C = 0.005471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.373727 B = 5079.433278 C = 5116.295668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.056 3.944 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.503 4.503 8 H 0.067 0.933 9 C 0.197 3.803 10 O -0.376 6.376 11 C 0.022 3.978 12 C 0.053 3.947 13 N -0.490 5.490 14 C 0.059 3.941 15 C -0.086 4.086 16 H 0.087 0.913 17 C 0.084 3.916 18 O -0.571 6.571 19 C -0.064 4.064 20 C -0.120 4.120 21 C -0.095 4.095 22 C -0.145 4.145 23 C -0.093 4.093 24 C -0.120 4.120 25 C 0.147 3.853 26 H 0.263 0.737 27 H 0.001 0.999 28 H -0.002 1.002 29 H 0.043 0.957 30 H 0.039 0.961 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.048 0.952 37 H 0.377 0.623 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.603 -13.230 6.543 15.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.145 4.145 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.541 4.541 8 H 0.086 0.914 9 C 0.123 3.877 10 O -0.296 6.296 11 C -0.058 4.058 12 C -0.073 4.073 13 N -0.203 5.203 14 C -0.068 4.068 15 C -0.105 4.105 16 H 0.105 0.895 17 C 0.006 3.994 18 O -0.376 6.376 19 C -0.101 4.101 20 C -0.122 4.122 21 C -0.113 4.113 22 C -0.164 4.164 23 C -0.112 4.112 24 C -0.141 4.141 25 C 0.050 3.950 26 H 0.072 0.928 27 H 0.018 0.982 28 H 0.016 0.984 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.223 0.777 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.354 -13.394 6.110 16.035 hybrid contribution -1.160 1.496 0.263 1.911 sum 5.194 -11.898 6.374 14.463 Atomic orbital electron populations 1.69953 1.06085 1.27071 1.51068 1.24914 0.94885 0.99280 0.95374 0.86464 0.79382 0.82202 0.78887 1.20040 1.21282 1.20005 1.20977 0.94050 0.89050 1.50014 0.91437 1.20143 0.88756 0.83975 0.94810 1.88037 1.34353 1.12164 1.94998 1.22957 0.95753 0.87420 0.99625 1.22545 0.95356 0.97695 0.91719 1.58463 1.22392 1.36080 1.03399 1.22089 0.94250 1.01745 0.88705 1.21204 0.98665 0.98550 0.92105 0.89503 1.22145 0.92716 0.99498 0.85084 1.86485 1.39393 1.94810 1.16881 1.20427 1.00358 0.94836 0.94447 1.19286 1.02137 0.96921 0.93895 1.20719 0.97202 0.95667 0.97749 1.20791 1.02362 1.00239 0.92970 1.20724 0.97934 0.95023 0.97532 1.20810 0.99300 0.98066 0.95879 1.18196 0.95057 0.88470 0.93323 0.92769 0.98161 0.98381 0.93925 0.94329 0.88828 0.89577 0.90344 0.92414 0.93581 0.93342 0.77659 0.91134 0.90674 0.87072 0.87120 0.86935 0.86547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.50 -14.70 9.43 -34.44 -0.32 -15.03 16 8 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 9 C 0.20 5.37 5.69 36.01 0.20 5.57 16 10 O -0.38 -8.67 7.19 -35.23 -0.25 -8.92 16 11 C 0.02 0.39 5.69 37.16 0.21 0.60 16 12 C 0.05 0.77 5.68 -3.82 -0.02 0.75 16 13 N -0.49 -7.64 4.72 -171.27 -0.81 -8.45 16 14 C 0.06 0.82 4.33 -3.88 -0.02 0.81 16 15 C -0.09 -1.16 2.65 -90.40 -0.24 -1.40 16 16 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 17 C 0.08 0.91 6.44 37.15 0.24 1.15 16 18 O -0.57 -6.20 13.43 -35.23 -0.47 -6.67 16 19 C -0.06 -0.99 4.94 -27.81 -0.14 -1.13 16 20 C -0.12 -2.15 5.74 -104.38 -0.60 -2.75 16 21 C -0.09 -1.70 9.63 -39.51 -0.38 -2.08 16 22 C -0.14 -2.58 10.05 -39.62 -0.40 -2.97 16 23 C -0.09 -1.67 10.04 -39.71 -0.40 -2.07 16 24 C -0.12 -2.18 7.45 -39.23 -0.29 -2.47 16 25 C 0.15 2.64 4.41 -83.85 -0.37 2.27 16 26 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.00 0.02 8.14 -51.93 -0.42 -0.41 16 28 H 0.00 -0.05 8.14 -51.93 -0.42 -0.47 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.04 0.69 6.04 -51.92 -0.31 0.37 16 31 H 0.09 1.36 5.49 -51.93 -0.29 1.08 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.93 6.04 -51.93 -0.31 0.62 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.52 8.10 -51.93 -0.42 0.10 16 37 H 0.38 2.27 9.12 45.56 0.42 2.69 16 38 H 0.07 1.16 8.05 -51.93 -0.42 0.74 16 39 H 0.07 1.12 8.14 -51.92 -0.42 0.69 16 40 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 41 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 42 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.12 1.94 5.71 -52.49 -0.30 1.64 16 LS Contribution 341.09 15.07 5.14 5.14 Total: -1.00 -33.31 341.09 -9.13 -42.44 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -5.83 Total: 2.94 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -2.62 Total: -17.23 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: -0.07 Total: -34.88 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.73 Total: -15.59 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.31 -9.13 -42.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590183988.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.131 kcal (2) G-P(sol) polarization free energy of solvation -33.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds