Wall clock time and date at job start Tue Mar 31 2020 07:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99967 * 2 1 4 4 H 1.48500 * 109.47087 * 239.99372 * 3 2 1 5 5 H 1.48506 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47461 * 119.99471 * 3 2 1 7 7 C 1.37879 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00209 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99959 * 0.02562 * 7 2 1 10 10 O 1.42897 * 109.47077 * 179.97438 * 9 7 2 11 11 C 1.42900 * 113.99771 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46831 * 180.02562 * 11 10 9 13 13 N 1.46904 * 109.47471 * 64.99994 * 12 11 10 14 14 C 1.46433 * 110.99865 * 55.60263 * 13 12 11 15 15 C 1.53385 * 108.64366 * 181.09179 * 14 13 12 16 16 H 1.09003 * 109.81303 * 308.64146 * 15 14 13 17 17 C 1.52994 * 109.76894 * 187.88447 * 15 14 13 18 18 O 1.42897 * 109.47394 * 176.52557 * 17 15 14 19 19 C 1.53037 * 107.92922 * 68.27347 * 15 14 13 20 20 C 1.50802 * 109.66241 * 312.73925 * 19 15 14 21 21 C 1.38616 * 118.12812 * 195.44335 * 20 19 15 22 22 C 1.38058 * 120.49098 * 180.23832 * 21 20 19 23 23 C 1.38321 * 119.88569 * 0.02788 * 22 21 20 24 24 C 1.37806 * 119.95106 * 359.88543 * 23 22 21 25 25 C 1.38376 * 122.01386 * 15.49755 * 20 19 15 26 26 H 0.97001 * 120.00201 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46454 * 60.00004 * 9 7 2 28 28 H 1.08994 * 109.47352 * 300.00323 * 9 7 2 29 29 H 1.09001 * 109.47563 * 60.00165 * 11 10 9 30 30 H 1.09008 * 109.46956 * 299.99722 * 11 10 9 31 31 H 1.08998 * 109.47188 * 304.99731 * 12 11 10 32 32 H 1.09003 * 109.46894 * 184.99328 * 12 11 10 33 33 H 1.09004 * 109.60068 * 61.34960 * 14 13 12 34 34 H 1.08994 * 109.61419 * 300.84448 * 14 13 12 35 35 H 1.08997 * 109.47730 * 56.51948 * 17 15 14 36 36 H 1.09003 * 109.47316 * 296.52216 * 17 15 14 37 37 H 0.96701 * 114.00555 * 179.97438 * 18 17 15 38 38 H 1.09002 * 109.44201 * 72.80254 * 19 15 14 39 39 H 1.09007 * 109.43943 * 192.72243 * 19 15 14 40 40 H 1.07995 * 119.75372 * 0.21668 * 21 20 19 41 41 H 1.07996 * 120.05671 * 180.02562 * 22 21 20 42 42 H 1.08000 * 120.01877 * 179.86416 * 23 22 21 43 43 H 1.07993 * 119.78578 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6481 -5.9561 0.0006 13 7 3.4073 -5.8879 1.2565 14 6 2.5173 -5.9959 2.4142 15 6 3.3597 -5.8911 3.6918 16 1 4.1896 -6.5962 3.6459 17 6 2.4889 -6.1957 4.9123 18 8 3.2967 -6.1758 6.0908 19 6 3.8992 -4.4620 3.7844 20 6 4.4798 -4.0516 2.4545 21 6 5.3008 -2.9354 2.4163 22 6 5.8545 -2.5135 1.2241 23 6 5.5893 -3.2074 0.0573 24 6 4.7754 -4.3190 0.0877 25 6 4.2148 -4.7520 1.2909 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5570 -0.8898 28 1 0.6240 -2.5567 0.8902 29 1 0.9453 -4.9823 -0.8903 30 1 0.9447 -4.9827 0.8898 31 1 3.3223 -5.7955 -0.8407 32 1 2.1822 -6.9374 -0.0892 33 1 2.0040 -6.9572 2.3924 34 1 1.7865 -5.1876 2.3906 35 1 2.0359 -7.1805 4.7988 36 1 1.7051 -5.4428 4.9964 37 1 2.8091 -6.3608 6.9051 38 1 3.0879 -3.7844 4.0507 39 1 4.6756 -4.4161 4.5482 40 1 5.5086 -2.3916 3.3259 41 1 6.4935 -1.6431 1.2025 42 1 6.0195 -2.8779 -0.8769 43 1 4.5705 -4.8590 -0.8248 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590183988.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:23 Heat of formation + Delta-G solvation = -84.690220 kcal Electronic energy + Delta-G solvation = -24592.092172 eV Core-core repulsion = 21215.263768 eV Total energy + Delta-G solvation = -3376.828404 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.68640 -38.67396 -38.32209 -37.16089 -35.33237 -34.72836 -31.69982 -31.22195 -30.07910 -28.73951 -26.78929 -25.90743 -24.54378 -23.90230 -22.72839 -21.78317 -20.29407 -18.61399 -18.53536 -17.70066 -17.47881 -17.09088 -16.79772 -16.51581 -16.27959 -15.58794 -15.26455 -15.15691 -14.99651 -14.73076 -14.37901 -14.20941 -13.89417 -13.64798 -13.38957 -13.21188 -13.03097 -12.73320 -12.71156 -12.59839 -12.35601 -12.22906 -12.12914 -11.90805 -11.53638 -11.30883 -11.24219 -10.86323 -10.84470 -10.62732 -10.16175 -9.40022 -8.42684 -8.30727 -6.40281 0.68879 0.73444 1.36159 1.40105 1.48134 2.32877 2.63969 3.03319 3.10902 3.27797 3.43723 3.68481 3.84315 3.97656 4.09685 4.19674 4.24866 4.30301 4.40941 4.43722 4.48146 4.57046 4.58617 4.63801 4.66090 4.70696 4.76055 4.86227 4.87394 4.97120 4.99136 5.14358 5.18575 5.26839 5.31301 5.46740 5.58276 5.70593 5.84544 5.97443 5.99321 6.21357 6.53197 6.56909 6.85648 6.94837 7.30640 8.81212 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014554 B = 0.005511 C = 0.005471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.373727 B = 5079.433278 C = 5116.295668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.008 3.992 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.216 3.784 10 O -0.381 6.381 11 C 0.011 3.989 12 C 0.060 3.940 13 N -0.487 5.487 14 C 0.059 3.941 15 C -0.082 4.082 16 H 0.083 0.917 17 C 0.089 3.911 18 O -0.589 6.589 19 C -0.060 4.060 20 C -0.141 4.141 21 C -0.112 4.112 22 C -0.160 4.160 23 C -0.109 4.109 24 C -0.137 4.137 25 C 0.136 3.864 26 H 0.268 0.732 27 H -0.021 1.021 28 H -0.027 1.027 29 H 0.050 0.950 30 H 0.041 0.959 31 H 0.095 0.905 32 H 0.128 0.872 33 H 0.113 0.887 34 H 0.033 0.967 35 H 0.073 0.927 36 H 0.046 0.954 37 H 0.398 0.602 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.123 0.877 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.917 -14.114 6.855 16.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.190 4.190 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.564 4.564 8 H 0.078 0.922 9 C 0.141 3.859 10 O -0.301 6.301 11 C -0.067 4.067 12 C -0.066 4.066 13 N -0.200 5.200 14 C -0.067 4.067 15 C -0.100 4.100 16 H 0.101 0.899 17 C 0.011 3.989 18 O -0.397 6.397 19 C -0.097 4.097 20 C -0.144 4.144 21 C -0.131 4.131 22 C -0.179 4.179 23 C -0.127 4.127 24 C -0.157 4.157 25 C 0.038 3.962 26 H 0.077 0.923 27 H -0.003 1.003 28 H -0.009 1.009 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.113 0.887 32 H 0.146 0.854 33 H 0.131 0.869 34 H 0.051 0.949 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.248 0.752 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.141 0.859 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.662 -14.310 6.438 17.047 hybrid contribution -1.272 1.690 0.187 2.123 sum 5.390 -12.620 6.625 15.238 Atomic orbital electron populations 1.70059 1.07616 1.28333 1.51307 1.25825 0.95784 1.02963 0.94414 0.85416 0.78281 0.77585 0.79316 1.18978 1.20152 1.19372 1.21226 0.93828 0.90466 1.50837 0.92215 1.19679 0.88527 0.85257 0.92477 1.88017 1.33776 1.13310 1.94973 1.23317 0.97358 0.85909 1.00107 1.22657 0.94336 0.98168 0.91420 1.58535 1.22491 1.34681 1.04314 1.22178 0.93618 1.02535 0.88363 1.21168 0.98851 0.96698 0.93312 0.89907 1.22056 0.91844 1.00848 0.84138 1.86427 1.40389 1.94996 1.17917 1.20404 0.99835 0.96157 0.93333 1.19688 1.02406 0.97204 0.95125 1.21044 0.97465 0.96080 0.98485 1.21089 1.02814 1.00953 0.93040 1.21036 0.98151 0.95219 0.98319 1.21073 0.99622 0.98493 0.96530 1.18441 0.95401 0.89119 0.93241 0.92328 1.00287 1.00940 0.93148 0.94085 0.88716 0.85364 0.86917 0.94874 0.90902 0.93537 0.75221 0.92644 0.90397 0.85862 0.85509 0.85448 0.85524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 2 C 0.01 0.47 5.46 84.66 0.46 0.93 16 3 Si 0.97 45.35 29.54 68.60 2.03 47.38 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.53 -31.29 9.43 25.60 0.24 -31.05 16 8 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 9 C 0.22 12.08 5.69 71.24 0.41 12.48 16 10 O -0.38 -17.80 7.19 -148.98 -1.07 -18.87 16 11 C 0.01 0.40 5.69 71.98 0.41 0.81 16 12 C 0.06 1.61 5.68 86.30 0.49 2.11 16 13 N -0.49 -14.43 4.72 -695.79 -3.29 -17.72 16 14 C 0.06 1.56 4.33 86.52 0.38 1.93 16 15 C -0.08 -2.08 2.65 -10.65 -0.03 -2.11 16 16 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 17 C 0.09 1.75 6.44 71.98 0.46 2.21 16 18 O -0.59 -11.65 13.43 -148.98 -2.00 -13.65 16 19 C -0.06 -1.88 4.94 29.89 0.15 -1.73 16 20 C -0.14 -5.14 5.74 -19.71 -0.11 -5.25 16 21 C -0.11 -4.07 9.63 22.32 0.21 -3.86 16 22 C -0.16 -5.73 10.05 22.25 0.22 -5.51 16 23 C -0.11 -3.90 10.04 22.19 0.22 -3.68 16 24 C -0.14 -4.93 7.45 22.50 0.17 -4.77 16 25 C 0.14 4.84 4.41 38.30 0.17 5.01 16 26 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 27 H -0.02 -1.21 8.14 -2.38 -0.02 -1.23 16 28 H -0.03 -1.62 8.14 -2.39 -0.02 -1.64 16 29 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.04 1.44 6.04 -2.38 -0.01 1.42 16 31 H 0.09 2.58 5.49 -2.39 -0.01 2.56 16 32 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.03 1.05 6.04 -2.39 -0.01 1.03 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 37 H 0.40 3.91 9.12 -74.06 -0.68 3.24 16 38 H 0.06 1.86 8.05 -2.39 -0.02 1.85 16 39 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 40 H 0.12 3.98 8.06 -2.91 -0.02 3.95 16 41 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 42 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 43 H 0.13 4.14 5.71 -2.91 -0.02 4.12 16 Total: -1.00 -72.35 341.09 0.13 -72.22 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.33 Total: 19.53 kcal Atomic # 6 Polarization: -36.31 SS G_CDS: 3.85 Total: -32.45 kcal Atomic # 7 Polarization: -71.15 SS G_CDS: -3.00 Total: -74.15 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -3.07 Total: -32.52 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -72.35 0.13 -72.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590183988.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.475 kcal (2) G-P(sol) polarization free energy of solvation -72.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds