Wall clock time and date at job start Tue Mar 31 2020 07:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99906 * 2 1 4 4 H 1.48499 * 109.47372 * 269.99936 * 3 2 1 5 5 H 1.48503 * 109.46953 * 29.99891 * 3 2 1 6 6 H 1.48496 * 109.47399 * 149.99586 * 3 2 1 7 7 C 1.37871 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00048 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99901 * 179.97438 * 7 2 1 10 10 O 1.42905 * 109.46892 * 185.03119 * 9 7 2 11 11 C 1.42901 * 113.99852 * 175.03217 * 10 9 7 12 12 C 1.52994 * 109.46981 * 184.96408 * 11 10 9 13 13 N 1.46901 * 109.47275 * 63.69247 * 12 11 10 14 14 C 1.46421 * 111.00380 * 64.05680 * 13 12 11 15 15 C 1.53372 * 108.66709 * 178.83943 * 14 13 12 16 16 H 1.08996 * 109.77721 * 51.38788 * 15 14 13 17 17 C 1.52996 * 109.77297 * 172.12690 * 15 14 13 18 18 O 1.42901 * 109.47172 * 184.99743 * 17 15 14 19 19 C 1.53050 * 107.91780 * 291.72896 * 15 14 13 20 20 C 1.50813 * 109.64523 * 47.32097 * 19 15 14 21 21 C 1.38614 * 118.12105 * 164.50267 * 20 19 15 22 22 C 1.38051 * 120.48500 * 179.75632 * 21 20 19 23 23 C 1.38308 * 119.88936 * 359.94866 * 22 21 20 24 24 C 1.37803 * 119.95320 * 0.14356 * 23 22 21 25 25 C 1.38371 * 122.01155 * 344.45719 * 20 19 15 26 26 H 0.97005 * 120.00336 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47016 * 65.03177 * 9 7 2 28 28 H 1.09002 * 109.47302 * 305.02554 * 9 7 2 29 29 H 1.09006 * 109.47077 * 64.96701 * 11 10 9 30 30 H 1.08993 * 109.47152 * 304.96470 * 11 10 9 31 31 H 1.08998 * 109.47449 * 303.69107 * 12 11 10 32 32 H 1.09003 * 109.46954 * 183.68981 * 12 11 10 33 33 H 1.09009 * 109.60193 * 298.59600 * 14 13 12 34 34 H 1.08997 * 109.60058 * 59.08006 * 14 13 12 35 35 H 1.09001 * 109.47609 * 304.99719 * 17 15 14 36 36 H 1.09002 * 109.47240 * 65.00214 * 17 15 14 37 37 H 0.96709 * 113.99991 * 179.97438 * 18 17 15 38 38 H 1.09005 * 109.44304 * 167.36866 * 19 15 14 39 39 H 1.08997 * 109.44305 * 287.30342 * 19 15 14 40 40 H 1.07995 * 119.75768 * 359.73236 * 21 20 19 41 41 H 1.08000 * 120.05434 * 179.97438 * 22 21 20 42 42 H 1.08002 * 120.02206 * 180.16878 * 23 22 21 43 43 H 1.08005 * 119.79042 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 8 3.9879 -2.5361 -0.1175 11 6 5.4078 -2.6402 -0.2406 12 6 5.7929 -4.1010 -0.4829 13 7 5.2307 -4.5496 -1.7638 14 6 5.8116 -3.8038 -2.8819 15 6 5.2110 -4.3332 -4.1900 16 1 4.1233 -4.3401 -4.1202 17 6 5.6489 -3.4460 -5.3570 18 8 4.9941 -3.8742 -6.5528 19 6 5.7262 -5.7587 -4.4017 20 6 5.5786 -6.5462 -3.1240 21 6 5.6782 -7.9271 -3.1924 22 6 5.5559 -8.6954 -2.0520 23 6 5.3333 -8.0856 -0.8307 24 6 5.2312 -6.7134 -0.7552 25 6 5.3508 -5.9312 -1.9056 26 1 -0.4851 0.8401 -0.0004 27 1 3.8752 -0.7595 0.9311 28 1 3.8746 -0.6046 -0.8421 29 1 5.8789 -2.2877 0.6770 30 1 5.7453 -2.0316 -1.0794 31 1 5.3984 -4.7193 0.3234 32 1 6.8788 -4.1905 -0.5115 33 1 5.5789 -2.7442 -2.7749 34 1 6.8925 -3.9439 -2.8926 35 1 5.3809 -2.4106 -5.1469 36 1 6.7285 -3.5228 -5.4866 37 1 5.2249 -3.3549 -7.3353 38 1 5.1500 -6.2391 -5.1925 39 1 6.7775 -5.7258 -4.6876 40 1 5.8525 -8.4054 -4.1448 41 1 5.6342 -9.7708 -2.1133 42 1 5.2399 -8.6844 0.0633 43 1 5.0578 -6.2399 0.1999 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590183990.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:28 Heat of formation + Delta-G solvation = -61.416167 kcal Electronic energy + Delta-G solvation = -23482.723379 eV Core-core repulsion = 20106.904213 eV Total energy + Delta-G solvation = -3375.819165 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -40.67399 -37.57488 -37.31532 -36.08914 -34.32979 -32.61454 -30.87833 -30.37640 -28.95749 -27.42925 -25.97199 -24.91841 -22.80483 -21.88641 -21.81276 -20.70869 -19.44433 -17.68975 -16.99188 -16.84809 -16.17560 -15.93447 -15.69907 -15.09781 -14.63151 -14.45877 -14.17051 -14.10846 -13.91182 -13.50421 -13.40557 -13.08627 -12.86341 -12.64682 -12.27032 -12.19775 -11.87644 -11.59201 -11.38608 -11.13071 -10.90083 -10.80384 -10.68504 -10.64352 -10.32816 -10.08363 -9.86883 -9.72942 -9.17537 -8.83888 -8.65664 -8.45983 -7.49095 -6.09889 -4.08605 1.46029 1.51951 3.23438 3.30585 3.31714 3.53841 3.89106 4.17006 4.35554 4.52159 4.57349 4.70442 4.91067 4.99280 5.07990 5.18511 5.21239 5.25761 5.29037 5.36228 5.39150 5.41445 5.45552 5.55060 5.62009 5.70965 5.75230 5.83446 5.87392 6.01985 6.05010 6.17686 6.23898 6.34973 6.53340 6.57030 6.65066 6.87157 6.99015 7.16143 7.43789 7.49084 7.60592 8.03023 8.68063 9.03580 9.49368 11.03349 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014961 B = 0.004333 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.111015 B = 6461.101666 C = 7529.691330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.516 4.516 8 H 0.083 0.917 9 C 0.170 3.830 10 O -0.365 6.365 11 C 0.058 3.942 12 C 0.058 3.942 13 N -0.475 5.475 14 C 0.065 3.935 15 C -0.092 4.092 16 H 0.097 0.903 17 C 0.085 3.915 18 O -0.570 6.570 19 C -0.063 4.063 20 C -0.132 4.132 21 C -0.091 4.091 22 C -0.160 4.160 23 C -0.095 4.095 24 C -0.165 4.165 25 C 0.140 3.860 26 H 0.266 0.734 27 H 0.000 1.000 28 H -0.004 1.004 29 H 0.047 0.953 30 H 0.040 0.960 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.044 0.956 35 H 0.052 0.948 36 H 0.044 0.956 37 H 0.378 0.622 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.715 -11.387 -8.423 22.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.702 3.298 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.554 4.554 8 H 0.101 0.899 9 C 0.094 3.906 10 O -0.284 6.284 11 C -0.021 4.021 12 C -0.067 4.067 13 N -0.186 5.186 14 C -0.062 4.062 15 C -0.110 4.110 16 H 0.115 0.885 17 C 0.007 3.993 18 O -0.375 6.375 19 C -0.100 4.100 20 C -0.136 4.136 21 C -0.110 4.110 22 C -0.179 4.179 23 C -0.113 4.113 24 C -0.185 4.185 25 C 0.040 3.960 26 H 0.076 0.924 27 H 0.018 0.982 28 H 0.014 0.986 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.225 0.775 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 16.681 -11.624 -7.977 21.841 hybrid contribution 1.353 1.493 -0.336 2.042 sum 18.034 -10.131 -8.313 22.293 Atomic orbital electron populations 1.69876 1.06052 1.27009 1.50426 1.24766 0.94775 0.98650 0.94749 0.86864 0.80316 0.83939 0.78669 1.20011 1.20791 1.19234 1.20889 0.88252 0.95326 1.50936 0.89907 1.20581 0.96274 0.79765 0.93937 1.88027 1.17000 1.29318 1.94033 1.22402 0.86229 0.94375 0.99046 1.22442 0.96617 0.97076 0.90573 1.57677 1.55494 1.01840 1.03592 1.22097 0.96097 0.99100 0.88883 1.21248 1.03065 0.94482 0.92254 0.88503 1.22113 0.95155 0.97209 0.84851 1.86490 1.71320 1.61052 1.18645 1.20466 1.00922 0.94028 0.94611 1.19514 1.05984 0.94199 0.93879 1.20874 0.99249 0.92594 0.98297 1.20900 1.04791 0.99368 0.92845 1.20900 0.98589 0.94193 0.97646 1.21234 1.05549 0.93978 0.97775 1.18680 0.95694 0.88323 0.93312 0.92397 0.98236 0.98583 0.93529 0.94183 0.88476 0.92795 0.89046 0.93774 0.93011 0.93732 0.77526 0.90139 0.91375 0.86446 0.86555 0.86256 0.85256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 21.44 27.37 -169.99 -4.65 16.78 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.25 6.69 56.52 0.38 -5.87 16 7 C -0.52 -15.52 9.99 -34.44 -0.34 -15.87 16 8 H 0.08 2.76 8.06 -52.49 -0.42 2.33 16 9 C 0.17 4.31 4.76 36.01 0.17 4.48 16 10 O -0.37 -8.48 10.25 -35.23 -0.36 -8.84 16 11 C 0.06 0.97 5.93 37.15 0.22 1.19 16 12 C 0.06 0.84 4.94 -3.83 -0.02 0.82 16 13 N -0.47 -7.44 4.47 -171.29 -0.77 -8.21 16 14 C 0.06 0.86 4.47 -3.89 -0.02 0.85 16 15 C -0.09 -1.20 2.64 -90.40 -0.24 -1.44 16 16 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 17 C 0.08 0.90 6.43 37.16 0.24 1.14 16 18 O -0.57 -6.20 13.47 -35.23 -0.47 -6.67 16 19 C -0.06 -0.76 4.97 -27.80 -0.14 -0.90 16 20 C -0.13 -1.79 5.74 -104.38 -0.60 -2.39 16 21 C -0.09 -1.10 9.63 -39.51 -0.38 -1.48 16 22 C -0.16 -1.84 10.05 -39.62 -0.40 -2.23 16 23 C -0.09 -1.15 10.03 -39.71 -0.40 -1.55 16 24 C -0.16 -2.30 9.02 -39.22 -0.35 -2.65 16 25 C 0.14 2.09 5.83 -83.85 -0.49 1.60 16 26 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 27 H 0.00 0.00 7.55 -51.93 -0.39 -0.39 16 28 H 0.00 -0.09 7.27 -51.93 -0.38 -0.46 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.04 0.63 6.33 -51.93 -0.33 0.31 16 31 H 0.10 1.39 5.50 -51.93 -0.29 1.11 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 1.28 6.40 -51.92 -0.33 0.95 16 34 H 0.04 0.51 8.11 -51.93 -0.42 0.09 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.04 0.38 8.07 -51.93 -0.42 -0.04 16 37 H 0.38 2.29 9.12 45.56 0.42 2.71 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 0.72 8.03 -51.93 -0.42 0.30 16 40 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 42 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.13 1.74 5.71 -52.48 -0.30 1.44 16 LS Contribution 343.65 15.07 5.18 5.18 Total: -1.00 -34.61 343.65 -8.96 -43.57 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -5.82 Total: 1.72 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -2.84 Total: -16.39 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.01 Total: -35.35 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.84 Total: -15.51 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.65 Total: 16.78 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.61 -8.96 -43.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590183990.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.845 kcal (2) G-P(sol) polarization free energy of solvation -34.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds