Wall clock time and date at job start Tue Mar 31 2020 07:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99906 * 2 1 4 4 H 1.48499 * 109.47372 * 269.99936 * 3 2 1 5 5 H 1.48503 * 109.46953 * 29.99891 * 3 2 1 6 6 H 1.48496 * 109.47399 * 149.99586 * 3 2 1 7 7 C 1.37871 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00048 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99901 * 179.97438 * 7 2 1 10 10 O 1.42905 * 109.46892 * 185.03119 * 9 7 2 11 11 C 1.42901 * 113.99852 * 175.03217 * 10 9 7 12 12 C 1.52994 * 109.46981 * 184.96408 * 11 10 9 13 13 N 1.46901 * 109.47275 * 63.69247 * 12 11 10 14 14 C 1.46421 * 111.00380 * 64.05680 * 13 12 11 15 15 C 1.53372 * 108.66709 * 178.83943 * 14 13 12 16 16 H 1.08996 * 109.77721 * 51.38788 * 15 14 13 17 17 C 1.52996 * 109.77297 * 172.12690 * 15 14 13 18 18 O 1.42901 * 109.47172 * 184.99743 * 17 15 14 19 19 C 1.53050 * 107.91780 * 291.72896 * 15 14 13 20 20 C 1.50813 * 109.64523 * 47.32097 * 19 15 14 21 21 C 1.38614 * 118.12105 * 164.50267 * 20 19 15 22 22 C 1.38051 * 120.48500 * 179.75632 * 21 20 19 23 23 C 1.38308 * 119.88936 * 359.94866 * 22 21 20 24 24 C 1.37803 * 119.95320 * 0.14356 * 23 22 21 25 25 C 1.38371 * 122.01155 * 344.45719 * 20 19 15 26 26 H 0.97005 * 120.00336 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47016 * 65.03177 * 9 7 2 28 28 H 1.09002 * 109.47302 * 305.02554 * 9 7 2 29 29 H 1.09006 * 109.47077 * 64.96701 * 11 10 9 30 30 H 1.08993 * 109.47152 * 304.96470 * 11 10 9 31 31 H 1.08998 * 109.47449 * 303.69107 * 12 11 10 32 32 H 1.09003 * 109.46954 * 183.68981 * 12 11 10 33 33 H 1.09009 * 109.60193 * 298.59600 * 14 13 12 34 34 H 1.08997 * 109.60058 * 59.08006 * 14 13 12 35 35 H 1.09001 * 109.47609 * 304.99719 * 17 15 14 36 36 H 1.09002 * 109.47240 * 65.00214 * 17 15 14 37 37 H 0.96709 * 113.99991 * 179.97438 * 18 17 15 38 38 H 1.09005 * 109.44304 * 167.36866 * 19 15 14 39 39 H 1.08997 * 109.44305 * 287.30342 * 19 15 14 40 40 H 1.07995 * 119.75768 * 359.73236 * 21 20 19 41 41 H 1.08000 * 120.05434 * 179.97438 * 22 21 20 42 42 H 1.08002 * 120.02206 * 180.16878 * 23 22 21 43 43 H 1.08005 * 119.79042 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 8 3.9879 -2.5361 -0.1175 11 6 5.4078 -2.6402 -0.2406 12 6 5.7929 -4.1010 -0.4829 13 7 5.2307 -4.5496 -1.7638 14 6 5.8116 -3.8038 -2.8819 15 6 5.2110 -4.3332 -4.1900 16 1 4.1233 -4.3401 -4.1202 17 6 5.6489 -3.4460 -5.3570 18 8 4.9941 -3.8742 -6.5528 19 6 5.7262 -5.7587 -4.4017 20 6 5.5786 -6.5462 -3.1240 21 6 5.6782 -7.9271 -3.1924 22 6 5.5559 -8.6954 -2.0520 23 6 5.3333 -8.0856 -0.8307 24 6 5.2312 -6.7134 -0.7552 25 6 5.3508 -5.9312 -1.9056 26 1 -0.4851 0.8401 -0.0004 27 1 3.8752 -0.7595 0.9311 28 1 3.8746 -0.6046 -0.8421 29 1 5.8789 -2.2877 0.6770 30 1 5.7453 -2.0316 -1.0794 31 1 5.3984 -4.7193 0.3234 32 1 6.8788 -4.1905 -0.5115 33 1 5.5789 -2.7442 -2.7749 34 1 6.8925 -3.9439 -2.8926 35 1 5.3809 -2.4106 -5.1469 36 1 6.7285 -3.5228 -5.4866 37 1 5.2249 -3.3549 -7.3353 38 1 5.1500 -6.2391 -5.1925 39 1 6.7775 -5.7258 -4.6876 40 1 5.8525 -8.4054 -4.1448 41 1 5.6342 -9.7708 -2.1133 42 1 5.2399 -8.6844 0.0633 43 1 5.0578 -6.2399 0.1999 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590183990.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:28 Heat of formation + Delta-G solvation = -87.135368 kcal Electronic energy + Delta-G solvation = -23483.838647 eV Core-core repulsion = 20106.904213 eV Total energy + Delta-G solvation = -3376.934434 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.68491 -38.85780 -38.37450 -37.29493 -35.37870 -34.79585 -31.84439 -31.61393 -30.34126 -29.16246 -26.85465 -26.00156 -24.08723 -23.77104 -22.80841 -21.83660 -20.41402 -19.05401 -18.59540 -17.96631 -17.47674 -17.07812 -16.96146 -16.45031 -16.32628 -15.54169 -15.41049 -15.26540 -14.96438 -14.73818 -14.48980 -14.43204 -14.06486 -13.94330 -13.76464 -13.44168 -13.14547 -12.80986 -12.68941 -12.51386 -12.40367 -12.13118 -12.00020 -11.81507 -11.63877 -11.41051 -11.28751 -10.92425 -10.88287 -10.75537 -10.31671 -9.61700 -8.51238 -8.37601 -6.45739 0.49425 0.54537 1.31345 1.35295 1.46399 2.28634 2.54906 2.92289 2.94780 3.06897 3.31251 3.62116 3.74071 3.89906 4.04687 4.16190 4.19205 4.26013 4.31039 4.35637 4.39354 4.45874 4.50864 4.53899 4.57534 4.60326 4.65144 4.70225 4.80760 4.85428 4.93000 5.01280 5.08004 5.19390 5.24175 5.36293 5.43557 5.58897 5.70057 5.91578 5.94556 6.14869 6.42509 6.58919 6.77912 6.92488 7.19006 8.80156 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014961 B = 0.004333 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.111015 B = 6461.101666 C = 7529.691330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.959 3.041 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.243 1.243 7 C -0.545 4.545 8 H 0.023 0.977 9 C 0.182 3.818 10 O -0.396 6.396 11 C 0.049 3.951 12 C 0.063 3.937 13 N -0.505 5.505 14 C 0.066 3.934 15 C -0.092 4.092 16 H 0.051 0.949 17 C 0.090 3.910 18 O -0.591 6.591 19 C -0.055 4.055 20 C -0.148 4.148 21 C -0.096 4.096 22 C -0.159 4.159 23 C -0.099 4.099 24 C -0.186 4.186 25 C 0.117 3.883 26 H 0.273 0.727 27 H 0.011 0.989 28 H 0.011 0.989 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.398 0.602 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.140 0.860 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.918 -10.914 -9.180 25.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.166 1.166 7 C -0.583 4.583 8 H 0.042 0.958 9 C 0.106 3.894 10 O -0.316 6.316 11 C -0.028 4.028 12 C -0.062 4.062 13 N -0.218 5.218 14 C -0.060 4.060 15 C -0.111 4.111 16 H 0.069 0.931 17 C 0.012 3.988 18 O -0.399 6.399 19 C -0.092 4.092 20 C -0.152 4.152 21 C -0.114 4.114 22 C -0.178 4.178 23 C -0.117 4.117 24 C -0.206 4.206 25 C 0.018 3.982 26 H 0.082 0.918 27 H 0.029 0.971 28 H 0.028 0.972 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.248 0.752 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.158 0.842 41 H 0.162 0.838 42 H 0.158 0.842 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 19.906 -11.171 -8.749 24.445 hybrid contribution 0.283 1.175 -0.117 1.214 sum 20.189 -9.996 -8.866 24.210 Atomic orbital electron populations 1.70049 1.08418 1.28775 1.51176 1.25890 0.95800 1.03529 0.93410 0.85569 0.79473 0.77243 0.79781 1.18374 1.19837 1.16635 1.21169 0.91211 0.93607 1.52268 0.95825 1.20270 0.93079 0.81285 0.94761 1.87977 1.21218 1.28067 1.94318 1.22769 0.82776 0.96558 1.00669 1.22423 0.98312 0.95180 0.90287 1.57691 1.56838 1.02738 1.04498 1.22107 0.97361 0.98129 0.88356 1.21201 1.00275 0.96104 0.93557 0.93058 1.22058 0.96610 0.96218 0.83929 1.86438 1.71911 1.61951 1.19613 1.20423 1.02002 0.92955 0.93833 1.19796 1.06243 0.95192 0.93924 1.21208 0.98463 0.92112 0.99612 1.21272 1.03456 1.00825 0.92290 1.21206 0.97829 0.93667 0.99008 1.21367 1.06710 0.95006 0.97542 1.18870 0.96995 0.88088 0.94243 0.91828 0.97092 0.97166 0.91398 0.92776 0.89171 0.89534 0.90151 0.91290 0.93244 0.90756 0.75153 0.90580 0.89151 0.84162 0.83790 0.84180 0.85814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.81 13.96 21.44 0.30 -60.51 16 2 C 0.01 0.68 5.47 84.65 0.46 1.14 16 3 Si 0.96 43.67 27.37 68.60 1.88 45.55 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.24 -10.07 6.69 99.48 0.67 -9.40 16 7 C -0.54 -34.12 9.99 25.60 0.26 -33.87 16 8 H 0.02 1.69 8.06 -2.91 -0.02 1.66 16 9 C 0.18 9.23 4.76 71.24 0.34 9.57 16 10 O -0.40 -18.74 10.25 -148.98 -1.53 -20.27 16 11 C 0.05 1.61 5.93 71.98 0.43 2.04 16 12 C 0.06 1.77 4.94 86.30 0.43 2.20 16 13 N -0.51 -15.97 4.47 -695.85 -3.11 -19.08 16 14 C 0.07 1.74 4.47 86.52 0.39 2.12 16 15 C -0.09 -2.41 2.64 -10.65 -0.03 -2.44 16 16 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 17 C 0.09 1.78 6.43 71.98 0.46 2.24 16 18 O -0.59 -12.20 13.47 -148.98 -2.01 -14.20 16 19 C -0.06 -1.27 4.97 29.90 0.15 -1.12 16 20 C -0.15 -3.90 5.74 -19.71 -0.11 -4.01 16 21 C -0.10 -2.12 9.63 22.32 0.21 -1.91 16 22 C -0.16 -3.34 10.05 22.24 0.22 -3.11 16 23 C -0.10 -2.28 10.03 22.18 0.22 -2.06 16 24 C -0.19 -5.20 9.02 22.50 0.20 -5.00 16 25 C 0.12 3.51 5.83 38.30 0.22 3.73 16 26 H 0.27 16.05 8.31 -92.70 -0.77 15.28 16 27 H 0.01 0.55 7.55 -2.39 -0.02 0.53 16 28 H 0.01 0.50 7.27 -2.39 -0.02 0.49 16 29 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 30 H 0.05 1.62 6.33 -2.39 -0.02 1.60 16 31 H 0.09 2.63 5.50 -2.39 -0.01 2.61 16 32 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.08 2.22 6.40 -2.38 -0.02 2.20 16 34 H 0.07 1.43 8.11 -2.39 -0.02 1.41 16 35 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 1.04 8.07 -2.39 -0.02 1.02 16 37 H 0.40 4.18 9.12 -74.05 -0.68 3.51 16 38 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.09 1.66 8.03 -2.39 -0.02 1.64 16 40 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 41 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 42 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 43 H 0.12 3.47 5.71 -2.91 -0.02 3.45 16 Total: -1.00 -79.13 343.65 -0.32 -79.45 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.29 Total: 19.54 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: 3.86 Total: -30.48 kcal Atomic # 7 Polarization: -76.78 SS G_CDS: -2.81 Total: -79.59 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -3.53 Total: -34.48 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.88 Total: 45.55 kcal Total: -79.13 -0.32 -79.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590183990.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.684 kcal (2) G-P(sol) polarization free energy of solvation -79.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds