Wall clock time and date at job start Tue Mar 31 2020 08:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00044 * 2 1 4 4 H 1.48501 * 109.47075 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47027 * 299.99693 * 3 2 1 6 6 H 1.48499 * 109.47295 * 59.99551 * 3 2 1 7 7 C 1.37878 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00361 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99550 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46661 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.47118 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47118 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47153 * 179.97438 * 12 11 10 14 14 O 1.21292 * 120.00025 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00119 * 179.97438 * 13 12 11 16 16 C 1.39931 * 119.99952 * 174.72930 * 15 13 12 17 17 C 1.38892 * 120.06700 * 326.55920 * 16 15 13 18 18 C 1.38093 * 119.92568 * 179.72430 * 17 16 15 19 19 C 1.38309 * 120.06762 * 0.56784 * 18 17 16 20 20 C 1.38256 * 120.14245 * 359.67966 * 19 18 17 21 21 C 1.50702 * 119.96375 * 180.02562 * 20 19 18 22 22 C 1.52998 * 109.47664 * 270.02720 * 21 20 19 23 23 O 1.42894 * 109.47161 * 180.02562 * 22 21 20 24 24 C 1.38131 * 120.07180 * 0.05083 * 20 19 18 25 25 H 0.97001 * 119.99848 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47582 * 60.00325 * 9 7 2 27 27 H 1.09003 * 109.47142 * 299.99733 * 9 7 2 28 28 H 1.09001 * 109.47455 * 60.00233 * 10 9 7 29 29 H 1.08994 * 109.47242 * 299.99703 * 10 9 7 30 30 H 1.09001 * 109.46716 * 59.99842 * 11 10 9 31 31 H 1.08994 * 109.46872 * 299.99992 * 11 10 9 32 32 H 1.09003 * 109.47006 * 299.99733 * 12 11 10 33 33 H 1.08996 * 109.47488 * 59.99832 * 12 11 10 34 34 H 0.96998 * 119.99918 * 354.72954 * 15 13 12 35 35 H 1.08001 * 120.04087 * 359.97145 * 17 16 15 36 36 H 1.08004 * 119.96795 * 180.24963 * 18 17 16 37 37 H 1.07999 * 119.92890 * 179.70040 * 19 18 17 38 38 H 1.09002 * 109.46895 * 30.03231 * 21 20 19 39 39 H 1.09000 * 109.46772 * 150.02456 * 21 20 19 40 40 H 1.09004 * 109.46646 * 300.00207 * 22 21 20 41 41 H 1.09000 * 109.47242 * 60.00023 * 22 21 20 42 42 H 0.96704 * 114.00326 * 180.02562 * 23 22 21 43 43 H 1.08000 * 120.03632 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0018 11 6 1.4801 -4.9871 0.0025 12 6 2.4744 -6.1500 0.0044 13 6 1.7209 -7.4551 0.0057 14 8 0.5080 -7.4551 0.0056 15 7 2.3947 -8.6223 0.0069 16 6 1.6995 -9.8315 0.1194 17 6 0.5396 -9.8990 0.8804 18 6 -0.1474 -11.0924 0.9848 19 6 0.3250 -12.2224 0.3421 20 6 1.4821 -12.1596 -0.4119 21 6 1.9928 -13.3931 -1.1109 22 6 2.9435 -14.1496 -0.1811 23 8 3.4282 -15.3189 -0.8442 24 6 2.1708 -10.9676 -0.5248 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6240 -2.5566 0.8903 28 1 2.8712 -3.6040 0.8923 29 1 2.8725 -3.6047 -0.8877 30 1 0.8539 -5.0454 -0.8878 31 1 0.8531 -5.0442 0.8922 32 1 3.1017 -6.0932 -0.8852 33 1 3.1003 -6.0915 0.8948 34 1 3.3617 -8.6242 -0.0701 35 1 0.1730 -9.0183 1.3867 36 1 -1.0516 -11.1447 1.5731 37 1 -0.2114 -13.1557 0.4293 38 1 1.1527 -14.0362 -1.3731 39 1 2.5249 -13.1032 -2.0170 40 1 3.7836 -13.5064 0.0810 41 1 2.4114 -14.4396 0.7249 42 1 4.0376 -15.8488 -0.3122 43 1 3.0744 -10.9191 -1.1144 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590887628.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:07 Heat of formation + Delta-G solvation = -92.779520 kcal Electronic energy + Delta-G solvation = -21536.226724 eV Core-core repulsion = 18159.047541 eV Total energy + Delta-G solvation = -3377.179183 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -40.71010 -39.03445 -37.32763 -35.28429 -34.80810 -33.17478 -32.62798 -30.55726 -29.45739 -28.52347 -25.75598 -23.99489 -23.15203 -22.34058 -21.34083 -20.02214 -19.98776 -18.10736 -17.47658 -16.71998 -16.43990 -16.13544 -16.05321 -15.63541 -14.81716 -14.65080 -14.51695 -14.29320 -14.02633 -13.79765 -13.22969 -12.97663 -12.65792 -12.36220 -12.22511 -11.92640 -11.77263 -11.70770 -11.61887 -11.40868 -11.01516 -10.58560 -10.50598 -10.49230 -10.44957 -10.42653 -9.89522 -9.63935 -9.25595 -9.02965 -8.99005 -8.31849 -8.30093 -5.96396 -3.98963 1.05360 1.11160 2.54977 2.89956 3.32383 3.39642 3.43454 3.50000 3.82398 4.47804 4.49287 4.59172 4.66001 4.78358 4.83136 4.93241 5.04886 5.12381 5.20131 5.25077 5.28048 5.35003 5.39089 5.56096 5.57648 5.73959 5.81397 6.08432 6.09361 6.15175 6.25016 6.33213 6.34741 6.50172 6.79745 6.82698 6.97647 7.13675 7.16572 7.23347 7.72948 7.88162 8.04143 8.05541 8.46500 9.08941 9.64838 11.14910 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.046475 B = 0.001985 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.327069 B =14103.903006 C =14548.149559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.137 4.137 13 C 0.511 3.489 14 O -0.513 6.513 15 N -0.683 5.683 16 C 0.156 3.844 17 C -0.123 4.123 18 C -0.097 4.097 19 C -0.135 4.135 20 C -0.068 4.068 21 C -0.078 4.078 22 C 0.081 3.919 23 O -0.577 6.577 24 C -0.145 4.145 25 H 0.259 0.741 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.410 0.590 35 H 0.136 0.864 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.047 0.953 41 H 0.048 0.952 42 H 0.381 0.619 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.314 -29.799 1.477 30.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.177 4.177 13 C 0.300 3.700 14 O -0.386 6.386 15 N -0.328 5.328 16 C 0.061 3.939 17 C -0.143 4.143 18 C -0.115 4.115 19 C -0.153 4.153 20 C -0.069 4.069 21 C -0.116 4.116 22 C 0.003 3.997 23 O -0.383 6.383 24 C -0.165 4.165 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.246 0.754 35 H 0.154 0.846 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.228 0.772 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.917 -29.345 1.008 29.953 hybrid contribution 1.265 0.813 0.415 1.560 sum 7.182 -28.532 1.423 29.456 Atomic orbital electron populations 1.69987 1.06043 1.26409 1.50974 1.25049 0.94849 0.99260 0.95455 0.86553 0.80064 0.83907 0.77554 1.19789 1.21049 1.21045 1.21317 0.93025 0.91179 1.50337 0.92685 1.19105 0.94067 0.91285 0.97354 1.21652 0.99098 0.93898 1.00142 1.21478 0.96995 0.92660 1.03093 1.21828 1.00198 0.91331 1.04371 1.21357 0.88632 0.85389 0.74579 1.90730 1.14114 1.87293 1.46505 1.43780 1.10789 1.04406 1.73853 1.17771 0.94411 0.85582 0.96098 1.21240 0.95518 0.98906 0.98611 1.21051 0.99419 0.92097 0.98974 1.21005 0.96629 0.98691 0.99007 1.19394 0.95346 0.93969 0.98166 1.20438 0.99391 0.93613 0.98132 1.22151 0.96518 0.86391 0.94603 1.86455 1.67081 1.38760 1.45961 1.20751 1.02002 0.92129 1.01662 0.93092 0.96554 0.96565 0.93415 0.93407 0.91674 0.91694 0.88785 0.88677 0.75385 0.84624 0.85576 0.86027 0.90113 0.90230 0.93428 0.93367 0.77207 0.85749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.46 13.29 55.43 0.74 -26.72 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 11 C -0.10 -1.80 4.50 -26.73 -0.12 -1.92 16 12 C -0.14 -1.71 5.70 -27.89 -0.16 -1.87 16 13 C 0.51 6.84 7.57 -10.99 -0.08 6.76 16 14 O -0.51 -8.94 13.68 5.55 0.08 -8.86 16 15 N -0.68 -6.96 5.34 -9.86 -0.05 -7.01 16 16 C 0.16 1.73 6.28 -83.69 -0.53 1.21 16 17 C -0.12 -1.48 8.65 -39.39 -0.34 -1.82 16 18 C -0.10 -0.97 10.04 -39.61 -0.40 -1.37 16 19 C -0.13 -1.18 9.70 -39.55 -0.38 -1.57 16 20 C -0.07 -0.59 5.13 -104.65 -0.54 -1.12 16 21 C -0.08 -0.57 5.71 -27.88 -0.16 -0.73 16 22 C 0.08 0.51 7.03 37.16 0.26 0.77 16 23 O -0.58 -3.92 13.66 -35.23 -0.48 -4.41 16 24 C -0.14 -1.33 9.62 -39.39 -0.38 -1.71 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 31 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.41 2.72 8.82 -40.82 -0.36 2.36 16 35 H 0.14 1.86 6.43 -52.49 -0.34 1.53 16 36 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16 39 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 40 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.38 0.88 9.12 45.56 0.42 1.29 16 43 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 363.54 15.07 5.48 5.48 Total: -1.00 -35.31 363.54 -8.93 -44.24 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -6.15 Total: -0.41 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -3.51 Total: -19.14 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.68 Total: -33.73 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.41 Total: -13.27 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.31 -8.93 -44.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590887628.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.541 kcal (2) G-P(sol) polarization free energy of solvation -35.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds