Wall clock time and date at job start Tue Mar 31 2020 08:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00044 * 2 1 4 4 H 1.48501 * 109.47075 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47027 * 299.99693 * 3 2 1 6 6 H 1.48499 * 109.47295 * 59.99551 * 3 2 1 7 7 C 1.37878 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00361 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99550 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46661 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.47118 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47118 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47153 * 179.97438 * 12 11 10 14 14 O 1.21292 * 120.00025 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00119 * 179.97438 * 13 12 11 16 16 C 1.39931 * 119.99952 * 174.72930 * 15 13 12 17 17 C 1.38892 * 120.06700 * 326.55920 * 16 15 13 18 18 C 1.38093 * 119.92568 * 179.72430 * 17 16 15 19 19 C 1.38309 * 120.06762 * 0.56784 * 18 17 16 20 20 C 1.38256 * 120.14245 * 359.67966 * 19 18 17 21 21 C 1.50702 * 119.96375 * 180.02562 * 20 19 18 22 22 C 1.52998 * 109.47664 * 270.02720 * 21 20 19 23 23 O 1.42894 * 109.47161 * 180.02562 * 22 21 20 24 24 C 1.38131 * 120.07180 * 0.05083 * 20 19 18 25 25 H 0.97001 * 119.99848 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47582 * 60.00325 * 9 7 2 27 27 H 1.09003 * 109.47142 * 299.99733 * 9 7 2 28 28 H 1.09001 * 109.47455 * 60.00233 * 10 9 7 29 29 H 1.08994 * 109.47242 * 299.99703 * 10 9 7 30 30 H 1.09001 * 109.46716 * 59.99842 * 11 10 9 31 31 H 1.08994 * 109.46872 * 299.99992 * 11 10 9 32 32 H 1.09003 * 109.47006 * 299.99733 * 12 11 10 33 33 H 1.08996 * 109.47488 * 59.99832 * 12 11 10 34 34 H 0.96998 * 119.99918 * 354.72954 * 15 13 12 35 35 H 1.08001 * 120.04087 * 359.97145 * 17 16 15 36 36 H 1.08004 * 119.96795 * 180.24963 * 18 17 16 37 37 H 1.07999 * 119.92890 * 179.70040 * 19 18 17 38 38 H 1.09002 * 109.46895 * 30.03231 * 21 20 19 39 39 H 1.09000 * 109.46772 * 150.02456 * 21 20 19 40 40 H 1.09004 * 109.46646 * 300.00207 * 22 21 20 41 41 H 1.09000 * 109.47242 * 60.00023 * 22 21 20 42 42 H 0.96704 * 114.00326 * 180.02562 * 23 22 21 43 43 H 1.08000 * 120.03632 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0018 11 6 1.4801 -4.9871 0.0025 12 6 2.4744 -6.1500 0.0044 13 6 1.7209 -7.4551 0.0057 14 8 0.5080 -7.4551 0.0056 15 7 2.3947 -8.6223 0.0069 16 6 1.6995 -9.8315 0.1194 17 6 0.5396 -9.8990 0.8804 18 6 -0.1474 -11.0924 0.9848 19 6 0.3250 -12.2224 0.3421 20 6 1.4821 -12.1596 -0.4119 21 6 1.9928 -13.3931 -1.1109 22 6 2.9435 -14.1496 -0.1811 23 8 3.4282 -15.3189 -0.8442 24 6 2.1708 -10.9676 -0.5248 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6240 -2.5566 0.8903 28 1 2.8712 -3.6040 0.8923 29 1 2.8725 -3.6047 -0.8877 30 1 0.8539 -5.0454 -0.8878 31 1 0.8531 -5.0442 0.8922 32 1 3.1017 -6.0932 -0.8852 33 1 3.1003 -6.0915 0.8948 34 1 3.3617 -8.6242 -0.0701 35 1 0.1730 -9.0183 1.3867 36 1 -1.0516 -11.1447 1.5731 37 1 -0.2114 -13.1557 0.4293 38 1 1.1527 -14.0362 -1.3731 39 1 2.5249 -13.1032 -2.0170 40 1 3.7836 -13.5064 0.0810 41 1 2.4114 -14.4396 0.7249 42 1 4.0376 -15.8488 -0.3122 43 1 3.0744 -10.9191 -1.1144 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590887628.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:06 Heat of formation + Delta-G solvation = -116.959146 kcal Electronic energy + Delta-G solvation = -21537.275231 eV Core-core repulsion = 18159.047541 eV Total energy + Delta-G solvation = -3378.227690 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.62418 -39.88436 -37.84550 -36.71191 -35.95140 -34.64409 -33.81030 -31.85735 -30.62816 -29.27102 -27.47252 -24.84719 -24.39072 -23.23853 -22.46529 -21.62945 -20.90039 -18.75987 -18.41462 -18.26026 -17.57526 -17.20140 -16.97017 -16.52141 -16.41924 -15.71769 -15.34530 -15.17924 -15.16318 -14.67427 -14.54648 -14.03226 -13.92288 -13.58943 -13.54773 -13.31326 -12.90072 -12.84467 -12.59791 -12.33149 -12.29734 -12.16594 -12.15573 -12.08883 -11.42866 -11.36996 -11.31680 -11.13804 -10.86923 -10.78311 -10.56041 -9.77277 -9.11517 -8.19201 -6.31285 0.25946 0.36424 1.40295 1.41130 1.54592 1.56968 2.02551 2.41625 2.77168 3.13658 3.34015 3.68510 3.90321 4.00102 4.03465 4.13397 4.14171 4.26217 4.36467 4.42352 4.51163 4.54971 4.59296 4.67190 4.69196 4.82242 4.86487 4.95568 5.00950 5.13211 5.17767 5.31071 5.34830 5.35055 5.40201 5.54644 5.57467 5.63304 5.77904 5.88022 6.04967 6.24931 6.41207 6.87611 6.90136 7.12522 7.38451 8.93163 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.046475 B = 0.001985 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.327069 B =14103.903006 C =14548.149559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.970 3.030 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.017 3.983 10 C -0.096 4.096 11 C -0.097 4.097 12 C -0.125 4.125 13 C 0.511 3.489 14 O -0.564 6.564 15 N -0.664 5.664 16 C 0.136 3.864 17 C -0.149 4.149 18 C -0.105 4.105 19 C -0.133 4.133 20 C -0.065 4.065 21 C -0.076 4.076 22 C 0.083 3.917 23 O -0.596 6.596 24 C -0.140 4.140 25 H 0.262 0.738 26 H -0.016 1.016 27 H -0.015 1.015 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.429 0.571 35 H 0.109 0.891 36 H 0.137 0.863 37 H 0.144 0.856 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.399 0.601 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.192 -31.118 1.174 32.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.794 3.206 4 H -0.181 1.181 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.020 4.020 10 C -0.133 4.133 11 C -0.135 4.135 12 C -0.164 4.164 13 C 0.301 3.699 14 O -0.441 6.441 15 N -0.311 5.311 16 C 0.042 3.958 17 C -0.170 4.170 18 C -0.123 4.123 19 C -0.151 4.151 20 C -0.066 4.066 21 C -0.114 4.114 22 C 0.005 3.995 23 O -0.405 6.405 24 C -0.161 4.161 25 H 0.071 0.929 26 H 0.003 0.997 27 H 0.003 0.997 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.269 0.731 35 H 0.127 0.873 36 H 0.155 0.845 37 H 0.162 0.838 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.249 0.751 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 8.862 -30.712 0.713 31.973 hybrid contribution 0.322 1.116 0.511 1.269 sum 9.184 -29.595 1.224 31.012 Atomic orbital electron populations 1.70142 1.08062 1.27660 1.51963 1.26102 0.95793 1.03766 0.94829 0.85329 0.79208 0.78410 0.77651 1.18054 1.20528 1.20501 1.21794 0.93787 0.92213 1.50084 0.91501 1.19074 0.94745 0.93864 0.94338 1.21447 0.97806 0.92611 1.01456 1.21261 0.97504 0.93613 1.01148 1.21695 0.98943 0.88547 1.07252 1.21475 0.88004 0.86475 0.73935 1.90724 1.16299 1.87982 1.49138 1.43519 1.11643 1.03372 1.72521 1.17933 0.94633 0.86325 0.96925 1.21216 0.96862 0.98867 1.00009 1.21237 0.99800 0.91921 0.99389 1.21285 0.96691 0.99012 0.98119 1.19625 0.95020 0.94401 0.97551 1.20430 0.99746 0.93006 0.98199 1.22117 0.96626 0.86405 0.94333 1.86401 1.67814 1.39173 1.47081 1.20979 1.02591 0.91423 1.01068 0.92886 0.99714 0.99696 0.91938 0.91935 0.93812 0.93754 0.85748 0.85759 0.73127 0.87281 0.84479 0.83795 0.89976 0.90176 0.92690 0.92699 0.75084 0.83466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.09 13.29 21.45 0.28 -58.80 16 2 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 3 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.54 -31.31 9.11 25.60 0.23 -31.07 16 8 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 9 C 0.02 0.93 4.97 29.85 0.15 1.07 16 10 C -0.10 -3.83 5.15 30.60 0.16 -3.68 16 11 C -0.10 -3.41 4.50 30.60 0.14 -3.27 16 12 C -0.13 -2.88 5.70 29.85 0.17 -2.71 16 13 C 0.51 13.48 7.57 87.66 0.66 14.14 16 14 O -0.56 -20.56 13.68 -3.07 -0.04 -20.60 16 15 N -0.66 -12.63 5.34 -303.50 -1.62 -14.25 16 16 C 0.14 2.93 6.28 38.15 0.24 3.17 16 17 C -0.15 -3.72 8.65 22.39 0.19 -3.53 16 18 C -0.10 -2.09 10.04 22.25 0.22 -1.87 16 19 C -0.13 -2.12 9.70 22.29 0.22 -1.91 16 20 C -0.07 -1.00 5.13 -19.88 -0.10 -1.10 16 21 C -0.08 -0.93 5.71 29.85 0.17 -0.75 16 22 C 0.08 0.82 7.03 71.98 0.51 1.33 16 23 O -0.60 -6.72 13.66 -148.98 -2.03 -8.76 16 24 C -0.14 -2.31 9.62 22.39 0.22 -2.09 16 25 H 0.26 15.46 8.31 -92.71 -0.77 14.68 16 26 H -0.02 -0.94 8.14 -2.39 -0.02 -0.95 16 27 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 28 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 31 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 32 H 0.12 2.17 8.14 -2.39 -0.02 2.16 16 33 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.43 4.53 8.82 -92.71 -0.82 3.72 16 35 H 0.11 3.27 6.43 -2.91 -0.02 3.25 16 36 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 37 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 38 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 39 H 0.08 0.98 8.08 -2.39 -0.02 0.96 16 40 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.40 0.93 9.12 -74.05 -0.68 0.25 16 43 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -79.57 363.54 1.76 -77.81 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -0.49 Total: 10.03 kcal Atomic # 6 Polarization: -35.90 SS G_CDS: 3.64 Total: -32.27 kcal Atomic # 7 Polarization: -71.72 SS G_CDS: -1.34 Total: -73.06 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -2.08 Total: -29.35 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -79.57 1.76 -77.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590887628.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.147 kcal (2) G-P(sol) polarization free energy of solvation -79.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds