Wall clock time and date at job start Tue Mar 31 2020 06:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47187 * 2 1 4 4 C 1.53003 * 109.46849 * 239.99853 * 2 1 3 5 5 C 1.50701 * 109.46940 * 175.07759 * 4 2 1 6 6 H 1.08000 * 120.00309 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99994 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99749 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00019 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47555 * 89.99886 * 9 7 5 11 11 H 1.48502 * 109.47190 * 209.99721 * 9 7 5 12 12 H 1.48496 * 109.47212 * 329.99565 * 9 7 5 13 13 N 1.46901 * 109.47205 * 119.99956 * 2 1 3 14 14 C 1.46873 * 110.91264 * 53.66279 * 13 2 1 15 15 C 1.53247 * 109.64300 * 162.34401 * 14 13 2 16 16 S 1.81900 * 108.66638 * 61.88753 * 15 14 13 17 17 C 1.81897 * 101.91517 * 308.59186 * 16 15 14 18 18 H 1.08996 * 109.63634 * 291.40283 * 17 16 15 19 19 C 1.50698 * 109.63043 * 171.00794 * 17 16 15 20 20 C 1.38233 * 120.00351 * 299.73143 * 19 17 16 21 21 C 1.38241 * 119.99868 * 179.76479 * 20 19 17 22 22 C 1.38231 * 120.00110 * 0.50841 * 21 20 19 23 23 C 1.38233 * 119.99594 * 359.74401 * 22 21 20 24 24 C 1.38227 * 120.00464 * 0.02562 * 23 22 21 25 25 C 1.46461 * 111.00018 * 287.59211 * 13 2 1 26 26 H 1.08997 * 109.46779 * 299.99882 * 1 2 3 27 27 H 1.08994 * 109.47149 * 59.99899 * 1 2 3 28 28 H 1.09000 * 109.47022 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47365 * 295.07662 * 4 2 1 30 30 H 1.09004 * 109.46818 * 55.08142 * 4 2 1 31 31 H 0.96998 * 119.99980 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.68871 * 42.18602 * 14 13 2 33 33 H 1.08996 * 109.33910 * 282.29227 * 14 13 2 34 34 H 1.09006 * 109.63215 * 302.08301 * 15 14 13 35 35 H 1.09000 * 109.63358 * 181.69018 * 15 14 13 36 36 H 1.08004 * 120.00055 * 359.97438 * 20 19 17 37 37 H 1.08003 * 119.99149 * 180.23195 * 21 20 19 38 38 H 1.07995 * 119.99793 * 179.72505 * 22 21 20 39 39 H 1.08001 * 119.99410 * 179.97438 * 23 22 21 40 40 H 1.08007 * 119.99992 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.40655 * 77.64627 * 25 13 2 42 42 H 1.08999 * 109.40954 * 317.88673 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5420 -0.6166 -1.3118 6 1 4.0793 -0.0888 -0.5377 7 6 4.2305 -1.1947 -2.3572 8 7 3.5763 -1.8378 -3.2996 9 14 6.0924 -1.0655 -2.4343 10 1 6.6986 -2.2197 -1.7234 11 1 6.5307 -1.0724 -3.8531 12 1 6.5281 0.1984 -1.7878 13 7 2.0197 -0.6925 1.1994 14 6 1.4280 -2.0322 1.3096 15 6 2.2555 -2.8827 2.2794 16 16 2.2091 -2.1033 3.9224 17 6 2.6914 -0.3916 3.5398 18 1 3.7375 -0.3653 3.2347 19 6 2.4975 0.4734 4.7584 20 6 1.2412 0.6054 5.3196 21 6 1.0644 1.3951 6.4404 22 6 2.1419 2.0611 6.9937 23 6 3.3973 1.9332 6.4293 24 6 3.5750 1.1398 5.3115 25 6 1.8051 0.1200 2.3990 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.7505 -1.7712 -1.2063 30 1 1.6064 -0.2608 -2.1371 31 1 4.0606 -2.2448 -4.0349 32 1 1.4151 -2.5097 0.3298 33 1 0.4076 -1.9466 1.6830 34 1 3.2863 -2.9386 1.9296 35 1 1.8337 -3.8861 2.3381 36 1 0.3984 0.0889 4.8845 37 1 0.0834 1.4952 6.8811 38 1 2.0029 2.6816 7.8666 39 1 4.2391 2.4539 6.8614 40 1 4.5559 1.0403 4.8703 41 1 0.7585 0.0564 2.6970 42 1 2.0563 1.1584 2.1829 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591014873.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:49 Heat of formation + Delta-G solvation = 22.941669 kcal Electronic energy + Delta-G solvation = -21265.916882 eV Core-core repulsion = 18336.508618 eV Total energy + Delta-G solvation = -2929.408264 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.47254 -38.24745 -33.99780 -32.77998 -31.63790 -30.97076 -29.69893 -27.45803 -27.10044 -23.82948 -23.21706 -22.71023 -21.76228 -20.77245 -18.93084 -16.99467 -16.42946 -16.20750 -15.57511 -15.17649 -15.02403 -14.58928 -14.27109 -13.95393 -13.76770 -13.44540 -13.24160 -12.93520 -12.65789 -12.45870 -12.16439 -12.01682 -11.82438 -11.59098 -11.43696 -11.19208 -11.05381 -10.95282 -10.68346 -10.47023 -10.40365 -9.99062 -9.56834 -9.26956 -9.02693 -8.96783 -8.70288 -8.30125 -7.70463 -7.40897 -5.93622 -3.91713 1.11813 1.35447 2.14897 2.75256 3.35954 3.42399 3.45944 3.77312 4.20632 4.52274 4.76410 4.81140 4.93493 5.07137 5.11316 5.26667 5.39407 5.43252 5.46460 5.51046 5.57162 5.61075 5.72388 5.80450 5.86147 5.91596 5.97414 6.00747 6.04803 6.21446 6.32240 6.39386 6.44029 6.46055 6.57776 6.60049 6.89083 6.92683 7.42020 7.56430 7.79510 7.91503 8.06629 8.51968 9.13844 9.70373 11.18240 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018394 B = 0.004494 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.872118 B = 6228.995324 C = 6614.476075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.092 3.908 3 H 0.071 0.929 4 C 0.030 3.970 5 C -0.491 4.491 6 H 0.059 0.941 7 C 0.052 3.948 8 N -0.903 5.903 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.525 5.525 14 C 0.059 3.941 15 C -0.072 4.072 16 S -0.278 6.278 17 C 0.000 4.000 18 H 0.103 0.897 19 C -0.061 4.061 20 C -0.098 4.098 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.122 4.122 24 C -0.103 4.103 25 C 0.067 3.933 26 H 0.039 0.961 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.258 0.742 32 H 0.100 0.900 33 H 0.036 0.964 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.040 0.960 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.190 4.579 17.262 18.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.016 4.016 3 H 0.089 0.911 4 C -0.007 4.007 5 C -0.530 4.530 6 H 0.077 0.923 7 C -0.147 4.147 8 N -0.544 5.544 9 Si 0.717 3.283 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.248 5.248 14 C -0.070 4.070 15 C -0.220 4.220 16 S -0.049 6.049 17 C -0.129 4.129 18 H 0.121 0.879 19 C -0.063 4.063 20 C -0.117 4.117 21 C -0.141 4.141 22 C -0.140 4.140 23 C -0.140 4.140 24 C -0.123 4.123 25 C -0.063 4.063 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.067 0.933 32 H 0.118 0.882 33 H 0.054 0.946 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.058 0.942 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.916 3.898 18.004 19.066 hybrid contribution 0.574 0.547 -1.178 1.420 sum -4.342 4.445 16.826 17.937 Atomic orbital electron populations 1.22536 0.99419 1.01417 1.00805 1.21923 0.90212 0.98219 0.91200 0.91093 1.19224 0.96450 0.95262 0.89748 1.21137 0.91706 1.33193 1.06954 0.92263 1.24990 0.97977 0.95842 0.95935 1.69957 1.35234 1.36850 1.12319 0.86647 0.86436 0.78353 0.76842 1.20902 1.21566 1.20047 1.61281 1.59980 1.01889 1.01671 1.22252 0.94353 0.90159 1.00265 1.23568 1.05348 1.00319 0.92787 1.86723 1.91304 1.09913 1.16952 1.22134 1.03969 0.92033 0.94744 0.87858 1.19357 0.93942 0.97250 0.95769 1.21077 0.96912 0.97999 0.95756 1.21119 0.98886 0.97630 0.96434 1.21140 0.93069 0.99821 1.00013 1.21098 0.97340 0.99227 0.96339 1.21084 0.98481 0.96734 0.95979 1.22203 0.96563 0.97788 0.89739 0.94198 0.92369 0.92845 0.96236 0.96181 0.93269 0.88250 0.94574 0.88603 0.88165 0.85698 0.86139 0.86290 0.86057 0.85795 0.94182 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.01 8.55 37.16 0.32 -2.69 16 2 C 0.09 1.78 2.23 -67.71 -0.15 1.63 16 3 H 0.07 1.41 7.78 -51.93 -0.40 1.01 16 4 C 0.03 0.73 4.39 -27.88 -0.12 0.61 16 5 C -0.49 -13.35 8.84 -34.44 -0.30 -13.65 16 6 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 9 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.52 -9.45 4.04 -226.72 -0.92 -10.37 16 14 C 0.06 0.99 4.09 -3.71 -0.02 0.98 16 15 C -0.07 -1.12 6.67 37.29 0.25 -0.87 16 16 S -0.28 -4.19 21.40 -107.50 -2.30 -6.49 16 17 C 0.00 0.00 2.96 -27.75 -0.08 -0.08 16 18 H 0.10 1.63 7.89 -51.93 -0.41 1.22 16 19 C -0.06 -0.80 4.81 -104.63 -0.50 -1.31 16 20 C -0.10 -1.20 8.81 -39.58 -0.35 -1.55 16 21 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 22 C -0.12 -1.20 10.05 -39.59 -0.40 -1.60 16 23 C -0.12 -1.27 10.05 -39.59 -0.40 -1.66 16 24 C -0.10 -1.23 9.67 -39.59 -0.38 -1.62 16 25 C 0.07 1.03 3.95 -3.93 -0.02 1.02 16 26 H 0.04 0.59 7.20 -51.93 -0.37 0.21 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.87 6.72 -51.93 -0.35 0.52 16 29 H 0.02 0.50 6.10 -51.93 -0.32 0.18 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.10 1.87 5.87 -51.93 -0.30 1.57 16 33 H 0.04 0.57 7.11 -51.93 -0.37 0.20 16 34 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 35 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.13 1.51 7.53 -52.48 -0.40 1.11 16 37 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 38 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 39 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 40 H 0.12 1.37 7.95 -52.48 -0.42 0.95 16 41 H 0.04 0.60 6.55 -51.93 -0.34 0.26 16 42 H 0.08 1.23 7.72 -51.93 -0.40 0.83 16 LS Contribution 341.38 15.07 5.14 5.14 Total: -1.00 -29.22 341.38 -11.59 -40.81 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -6.58 Total: 1.22 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -2.65 Total: -21.11 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: -0.18 Total: -36.28 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -4.19 SS G_CDS: -2.30 Total: -6.49 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.22 -11.59 -40.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591014873.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.748 kcal (2) G-P(sol) polarization free energy of solvation -29.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds