Wall clock time and date at job start Tue Mar 31 2020 06:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47187 * 2 1 4 4 C 1.53003 * 109.46849 * 239.99853 * 2 1 3 5 5 C 1.50701 * 109.46940 * 175.07759 * 4 2 1 6 6 H 1.08000 * 120.00309 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99994 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99749 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00019 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47555 * 89.99886 * 9 7 5 11 11 H 1.48502 * 109.47190 * 209.99721 * 9 7 5 12 12 H 1.48496 * 109.47212 * 329.99565 * 9 7 5 13 13 N 1.46901 * 109.47205 * 119.99956 * 2 1 3 14 14 C 1.46873 * 110.91264 * 53.66279 * 13 2 1 15 15 C 1.53247 * 109.64300 * 162.34401 * 14 13 2 16 16 S 1.81900 * 108.66638 * 61.88753 * 15 14 13 17 17 C 1.81897 * 101.91517 * 308.59186 * 16 15 14 18 18 H 1.08996 * 109.63634 * 291.40283 * 17 16 15 19 19 C 1.50698 * 109.63043 * 171.00794 * 17 16 15 20 20 C 1.38233 * 120.00351 * 299.73143 * 19 17 16 21 21 C 1.38241 * 119.99868 * 179.76479 * 20 19 17 22 22 C 1.38231 * 120.00110 * 0.50841 * 21 20 19 23 23 C 1.38233 * 119.99594 * 359.74401 * 22 21 20 24 24 C 1.38227 * 120.00464 * 0.02562 * 23 22 21 25 25 C 1.46461 * 111.00018 * 287.59211 * 13 2 1 26 26 H 1.08997 * 109.46779 * 299.99882 * 1 2 3 27 27 H 1.08994 * 109.47149 * 59.99899 * 1 2 3 28 28 H 1.09000 * 109.47022 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47365 * 295.07662 * 4 2 1 30 30 H 1.09004 * 109.46818 * 55.08142 * 4 2 1 31 31 H 0.96998 * 119.99980 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.68871 * 42.18602 * 14 13 2 33 33 H 1.08996 * 109.33910 * 282.29227 * 14 13 2 34 34 H 1.09006 * 109.63215 * 302.08301 * 15 14 13 35 35 H 1.09000 * 109.63358 * 181.69018 * 15 14 13 36 36 H 1.08004 * 120.00055 * 359.97438 * 20 19 17 37 37 H 1.08003 * 119.99149 * 180.23195 * 21 20 19 38 38 H 1.07995 * 119.99793 * 179.72505 * 22 21 20 39 39 H 1.08001 * 119.99410 * 179.97438 * 23 22 21 40 40 H 1.08007 * 119.99992 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.40655 * 77.64627 * 25 13 2 42 42 H 1.08999 * 109.40954 * 317.88673 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5420 -0.6166 -1.3118 6 1 4.0793 -0.0888 -0.5377 7 6 4.2305 -1.1947 -2.3572 8 7 3.5763 -1.8378 -3.2996 9 14 6.0924 -1.0655 -2.4343 10 1 6.6986 -2.2197 -1.7234 11 1 6.5307 -1.0724 -3.8531 12 1 6.5281 0.1984 -1.7878 13 7 2.0197 -0.6925 1.1994 14 6 1.4280 -2.0322 1.3096 15 6 2.2555 -2.8827 2.2794 16 16 2.2091 -2.1033 3.9224 17 6 2.6914 -0.3916 3.5398 18 1 3.7375 -0.3653 3.2347 19 6 2.4975 0.4734 4.7584 20 6 1.2412 0.6054 5.3196 21 6 1.0644 1.3951 6.4404 22 6 2.1419 2.0611 6.9937 23 6 3.3973 1.9332 6.4293 24 6 3.5750 1.1398 5.3115 25 6 1.8051 0.1200 2.3990 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.7505 -1.7712 -1.2063 30 1 1.6064 -0.2608 -2.1371 31 1 4.0606 -2.2448 -4.0349 32 1 1.4151 -2.5097 0.3298 33 1 0.4076 -1.9466 1.6830 34 1 3.2863 -2.9386 1.9296 35 1 1.8337 -3.8861 2.3381 36 1 0.3984 0.0889 4.8845 37 1 0.0834 1.4952 6.8811 38 1 2.0029 2.6816 7.8666 39 1 4.2391 2.4539 6.8614 40 1 4.5559 1.0403 4.8703 41 1 0.7585 0.0564 2.6970 42 1 2.0563 1.1584 2.1829 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591014873.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:48 Heat of formation + Delta-G solvation = 8.545562 kcal Electronic energy + Delta-G solvation = -21266.541144 eV Core-core repulsion = 18336.508618 eV Total energy + Delta-G solvation = -2930.032526 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.45798 -39.56375 -35.52016 -34.36605 -33.19935 -31.79820 -30.95573 -29.24075 -28.34153 -25.31988 -24.79311 -23.69270 -23.03393 -21.83776 -20.43728 -18.36361 -18.00337 -17.50040 -16.84464 -16.64471 -16.23578 -15.97374 -15.60566 -15.17795 -14.96199 -14.63497 -14.38685 -14.16583 -14.01298 -13.74200 -13.58960 -13.41312 -13.35439 -13.09094 -12.82440 -12.63768 -12.55681 -12.40305 -12.14437 -11.92685 -11.77823 -11.59743 -11.12938 -11.11265 -10.71622 -10.46776 -9.80341 -9.61850 -9.09094 -8.65121 -8.10876 -6.14989 0.18502 0.52171 1.02851 1.40485 1.41234 1.51394 1.53422 2.45993 2.81191 2.98078 3.24753 3.72064 3.78861 3.93755 4.03666 4.16478 4.19212 4.22434 4.24991 4.32399 4.42212 4.46421 4.52700 4.61645 4.63196 4.68610 4.77935 4.84795 4.99139 5.01680 5.08014 5.16111 5.18340 5.21981 5.48265 5.57874 5.63558 5.67122 5.68792 5.88973 6.11454 6.24130 6.33689 6.45937 6.98383 7.50778 9.00963 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018394 B = 0.004494 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.872118 B = 6228.995324 C = 6614.476075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.101 3.899 3 H 0.065 0.935 4 C 0.037 3.963 5 C -0.498 4.498 6 H 0.055 0.945 7 C 0.000 4.000 8 N -0.938 5.938 9 Si 0.951 3.049 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.268 1.268 13 N -0.544 5.544 14 C 0.065 3.935 15 C -0.071 4.071 16 S -0.270 6.270 17 C 0.007 3.993 18 H 0.085 0.915 19 C -0.079 4.079 20 C -0.109 4.109 21 C -0.125 4.125 22 C -0.119 4.119 23 C -0.124 4.124 24 C -0.118 4.118 25 C 0.075 3.925 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.001 0.999 30 H -0.006 1.006 31 H 0.258 0.742 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.125 0.875 41 H 0.051 0.949 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.356 5.723 19.742 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.007 4.007 3 H 0.083 0.917 4 C 0.000 4.000 5 C -0.536 4.536 6 H 0.073 0.927 7 C -0.197 4.197 8 N -0.580 5.580 9 Si 0.777 3.223 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.192 1.192 13 N -0.267 5.267 14 C -0.064 4.064 15 C -0.219 4.219 16 S -0.041 6.041 17 C -0.122 4.122 18 H 0.104 0.896 19 C -0.081 4.081 20 C -0.129 4.129 21 C -0.143 4.143 22 C -0.137 4.137 23 C -0.142 4.142 24 C -0.138 4.138 25 C -0.055 4.055 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.019 0.981 30 H 0.012 0.988 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.162 0.838 38 H 0.166 0.834 39 H 0.162 0.838 40 H 0.142 0.858 41 H 0.069 0.931 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.082 5.046 20.501 21.715 hybrid contribution 0.618 0.232 -1.877 1.990 sum -4.463 5.278 18.623 19.865 Atomic orbital electron populations 1.22396 0.96859 1.01843 1.02025 1.21606 0.92201 0.97022 0.89848 0.91665 1.19072 0.95107 0.94525 0.91336 1.21445 0.93264 1.32405 1.06486 0.92697 1.25766 1.02411 0.95727 0.95766 1.70077 1.36921 1.37991 1.13010 0.85660 0.81201 0.78548 0.76877 1.20517 1.21230 1.19240 1.61168 1.60773 1.02606 1.02195 1.22159 0.95347 0.89596 0.99286 1.23502 1.03961 1.01347 0.93100 1.86677 1.91137 1.10309 1.15980 1.22047 1.02605 0.92121 0.95430 0.89615 1.19287 0.94973 0.98109 0.95723 1.21150 0.96360 0.98753 0.96624 1.21434 1.00329 0.96799 0.95696 1.21534 0.92479 0.99267 1.00449 1.21414 0.98589 0.98590 0.95571 1.21239 0.98332 0.97350 0.96863 1.22170 0.97354 0.97215 0.88728 0.91845 0.92222 0.92806 0.98055 0.98781 0.93285 0.90824 0.93089 0.90694 0.86207 0.85917 0.83831 0.83397 0.83779 0.85751 0.93107 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.52 8.55 71.98 0.62 -4.91 16 2 C 0.10 3.95 2.23 44.92 0.10 4.05 16 3 H 0.07 2.61 7.78 -2.39 -0.02 2.59 16 4 C 0.04 1.85 4.39 29.85 0.13 1.98 16 5 C -0.50 -27.65 8.84 25.60 0.23 -27.42 16 6 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 7 C 0.00 -0.03 5.46 84.65 0.46 0.44 16 8 N -0.94 -56.68 13.29 21.45 0.28 -56.40 16 9 Si 0.95 45.14 29.54 68.60 2.03 47.17 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 13 N -0.54 -19.65 4.04 -871.19 -3.52 -23.17 16 14 C 0.07 2.20 4.09 86.39 0.35 2.56 16 15 C -0.07 -2.19 6.67 72.06 0.48 -1.71 16 16 S -0.27 -7.93 21.40 -56.49 -1.21 -9.14 16 17 C 0.01 0.20 2.96 29.93 0.09 0.28 16 18 H 0.09 2.75 7.89 -2.39 -0.02 2.73 16 19 C -0.08 -1.98 4.81 -19.87 -0.10 -2.08 16 20 C -0.11 -2.46 8.81 22.27 0.20 -2.26 16 21 C -0.12 -2.25 10.05 22.27 0.22 -2.02 16 22 C -0.12 -1.94 10.05 22.27 0.22 -1.71 16 23 C -0.12 -2.24 10.05 22.27 0.22 -2.01 16 24 C -0.12 -2.67 9.67 22.27 0.22 -2.46 16 25 C 0.07 2.25 3.95 86.47 0.34 2.59 16 26 H 0.06 1.74 7.20 -2.39 -0.02 1.72 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.05 1.71 6.72 -2.39 -0.02 1.70 16 29 H 0.00 0.07 6.10 -2.39 -0.01 0.05 16 30 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 31 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 32 H 0.07 2.87 5.87 -2.39 -0.01 2.86 16 33 H 0.05 1.56 7.11 -2.39 -0.02 1.55 16 34 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 35 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.12 2.74 7.53 -2.91 -0.02 2.72 16 37 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 38 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 39 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 40 H 0.12 2.68 7.95 -2.91 -0.02 2.66 16 41 H 0.05 1.43 6.55 -2.39 -0.02 1.41 16 42 H 0.08 2.38 7.72 -2.39 -0.02 2.36 16 Total: -1.00 -63.18 341.38 2.35 -60.83 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.98 Total: 15.39 kcal Atomic # 6 Polarization: -38.47 SS G_CDS: 3.79 Total: -34.68 kcal Atomic # 7 Polarization: -76.33 SS G_CDS: -3.24 Total: -79.57 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 16 Polarization: -7.93 SS G_CDS: -1.21 Total: -9.14 kcal Total: -63.18 2.35 -60.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591014873.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.373 kcal (2) G-P(sol) polarization free energy of solvation -63.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds