Wall clock time and date at job start Tue Mar 31 2020 06:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.47444 * 2 1 4 4 C 1.52998 * 109.47468 * 240.00222 * 2 1 3 5 5 C 1.50703 * 109.47523 * 176.67247 * 4 2 1 6 6 H 1.07993 * 119.99691 * 355.10702 * 5 4 2 7 7 C 1.37880 * 119.99919 * 175.10722 * 5 4 2 8 8 N 1.31513 * 120.00260 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99653 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46713 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47330 * 300.00109 * 9 7 5 12 12 H 1.48502 * 109.47101 * 60.00450 * 9 7 5 13 13 N 1.46905 * 109.47354 * 119.99946 * 2 1 3 14 14 C 1.46469 * 110.99827 * 288.68090 * 13 2 1 15 15 C 1.53250 * 109.85753 * 197.76518 * 14 13 2 16 16 S 1.81898 * 108.50603 * 297.99690 * 15 14 13 17 17 C 1.81906 * 101.91319 * 51.30859 * 16 15 14 18 18 H 1.08993 * 109.62997 * 68.40052 * 17 16 15 19 19 C 1.50697 * 109.62836 * 188.79316 * 17 16 15 20 20 C 1.38230 * 120.00385 * 59.72692 * 19 17 16 21 21 C 1.38244 * 120.00126 * 179.78349 * 20 19 17 22 22 C 1.38230 * 119.99520 * 0.44696 * 21 20 19 23 23 C 1.38236 * 120.00560 * 359.80471 * 22 21 20 24 24 C 1.38231 * 119.99607 * 359.97438 * 23 22 21 25 25 C 1.46467 * 110.99760 * 54.66234 * 13 2 1 26 26 H 1.08999 * 109.47351 * 304.06672 * 1 2 3 27 27 H 1.08993 * 109.47591 * 64.07064 * 1 2 3 28 28 H 1.09003 * 109.47062 * 184.07067 * 1 2 3 29 29 H 1.09005 * 109.46968 * 56.67014 * 4 2 1 30 30 H 1.09009 * 109.46974 * 296.67343 * 4 2 1 31 31 H 0.97003 * 119.99743 * 359.97438 * 8 7 5 32 32 H 1.08997 * 109.40941 * 317.88250 * 14 13 2 33 33 H 1.08997 * 109.40227 * 77.72706 * 14 13 2 34 34 H 1.08997 * 109.63259 * 57.70677 * 15 14 13 35 35 H 1.09005 * 109.62891 * 178.29844 * 15 14 13 36 36 H 1.08005 * 119.99919 * 359.97438 * 20 19 17 37 37 H 1.07994 * 119.99872 * 180.27205 * 21 20 19 38 38 H 1.08009 * 119.99796 * 179.83427 * 22 21 20 39 39 H 1.07998 * 119.99965 * 180.02562 * 23 22 21 40 40 H 1.07996 * 120.00065 * 179.97438 * 24 23 22 41 41 H 1.08993 * 109.40471 * 282.35087 * 25 13 2 42 42 H 1.09003 * 109.40808 * 42.11836 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5448 -0.6502 -1.2912 6 1 4.0790 -0.0751 -0.5495 7 6 4.2393 -1.3194 -2.2765 8 7 3.5886 -2.0193 -3.1800 9 14 6.1045 -1.2307 -2.3288 10 1 6.6060 -2.0308 -3.4749 11 1 6.5286 0.1834 -2.4883 12 1 6.6616 -1.7750 -1.0644 13 7 2.0197 -0.6925 1.1995 14 6 1.7817 0.1089 2.4021 15 6 2.6657 -0.3962 3.5476 16 16 2.2067 -2.1175 3.9152 17 6 2.2799 -2.8856 2.2678 18 1 3.3145 -2.9233 1.9270 19 6 1.7177 -4.2821 2.3351 20 6 0.4119 -4.4828 2.7419 21 6 -0.1052 -5.7636 2.7992 22 6 0.6865 -6.8443 2.4586 23 6 1.9939 -6.6442 2.0567 24 6 2.5095 -5.3631 1.9950 25 6 1.4490 -2.0378 1.2986 26 1 -0.3634 0.5756 0.8513 27 1 -0.3634 0.4493 -0.9241 28 1 -0.3633 -1.0251 0.0730 29 1 1.6288 -0.2429 -2.1382 30 1 1.7262 -1.7647 -1.2199 31 1 2.6201 -2.0650 -3.1530 32 1 2.0188 1.1524 2.1948 33 1 0.7340 0.0260 2.6911 34 1 3.7129 -0.3522 3.2487 35 1 2.5079 0.2216 4.4317 36 1 -0.2053 -3.6386 3.0120 37 1 -1.1267 -5.9199 3.1129 38 1 0.2834 -7.8453 2.5059 39 1 2.6122 -7.4886 1.7902 40 1 3.5310 -5.2066 1.6815 41 1 0.4241 -1.9704 1.6634 42 1 1.4518 -2.5059 0.3142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591014874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:52 Heat of formation + Delta-G solvation = 20.273397 kcal Electronic energy + Delta-G solvation = -21610.602924 eV Core-core repulsion = 18681.078954 eV Total energy + Delta-G solvation = -2929.523969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.38368 -38.31180 -33.93190 -33.10882 -31.83765 -30.82721 -29.32327 -27.41331 -26.99626 -23.90322 -23.13817 -22.52861 -21.51270 -20.91704 -19.17643 -16.99144 -16.65600 -16.36796 -15.61779 -15.26698 -14.75308 -14.44925 -13.94250 -13.83042 -13.64651 -13.43996 -13.19649 -13.17193 -12.85713 -12.47021 -12.38064 -12.26555 -11.64594 -11.49049 -11.26085 -11.14423 -11.05938 -10.93948 -10.71046 -10.50571 -10.25435 -10.05512 -9.70757 -9.39173 -8.82448 -8.58973 -8.51109 -8.25056 -7.74986 -7.43568 -6.25329 -3.91248 1.23052 1.49837 2.14957 2.72306 3.48227 3.50064 3.68529 3.90046 4.19348 4.61464 4.84063 4.93222 5.06069 5.11875 5.19117 5.22014 5.40452 5.43005 5.48512 5.51587 5.58881 5.59703 5.65218 5.77279 5.81261 5.91218 5.94248 6.04817 6.11367 6.15388 6.22580 6.36501 6.48044 6.52974 6.57650 6.72589 6.74211 7.06778 7.20063 7.34214 7.66850 7.76193 8.32868 8.60817 8.99083 9.77144 11.14690 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012408 B = 0.006126 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.118203 B = 4569.388551 C = 5476.843853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.100 3.900 3 H 0.072 0.928 4 C 0.016 3.984 5 C -0.571 4.571 6 H 0.052 0.948 7 C 0.010 3.990 8 N -0.920 5.920 9 Si 1.065 2.935 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.289 1.289 13 N -0.523 5.523 14 C 0.056 3.944 15 C -0.074 4.074 16 S -0.277 6.277 17 C 0.003 3.997 18 H 0.107 0.893 19 C -0.061 4.061 20 C -0.099 4.099 21 C -0.124 4.124 22 C -0.121 4.121 23 C -0.121 4.121 24 C -0.098 4.098 25 C 0.072 3.928 26 H 0.042 0.958 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.008 0.992 30 H 0.012 0.988 31 H 0.265 0.735 32 H 0.080 0.920 33 H 0.038 0.962 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.037 0.963 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.442 -3.332 13.160 15.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.008 4.008 3 H 0.091 0.909 4 C -0.021 4.021 5 C -0.610 4.610 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.558 5.558 9 Si 0.894 3.106 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.216 1.216 13 N -0.246 5.246 14 C -0.074 4.074 15 C -0.223 4.223 16 S -0.048 6.048 17 C -0.125 4.125 18 H 0.125 0.875 19 C -0.063 4.063 20 C -0.119 4.119 21 C -0.142 4.142 22 C -0.140 4.140 23 C -0.139 4.139 24 C -0.118 4.118 25 C -0.058 4.058 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.026 0.974 30 H 0.030 0.970 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.144 0.856 41 H 0.055 0.945 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.833 -4.293 13.302 14.790 hybrid contribution -1.847 1.198 -0.158 2.207 sum -6.679 -3.095 13.145 15.066 Atomic orbital electron populations 1.22565 0.99435 1.01310 1.01109 1.21738 0.90035 0.98081 0.90922 0.90948 1.19361 0.97624 0.94728 0.90416 1.21883 0.91050 1.33559 1.14464 0.92979 1.25730 1.06557 0.93820 0.93100 1.70799 1.10035 1.39750 1.35208 0.83593 0.74982 0.76072 0.75932 1.21075 1.21681 1.21612 1.61130 1.60264 1.01511 1.01723 1.22181 0.96915 0.97958 0.90370 1.23511 1.03777 0.93953 1.01065 1.86721 1.91764 1.10100 1.16176 1.22168 1.04070 0.93052 0.93249 0.87518 1.19319 0.94288 0.93056 0.99671 1.21034 0.94885 0.97240 0.98713 1.21083 0.99699 0.92612 1.00830 1.21131 0.94367 0.98722 0.99765 1.21107 0.95763 0.96844 1.00162 1.21122 0.99997 0.92011 0.98682 1.22188 0.94100 0.89614 0.99855 0.93913 0.92373 0.92914 0.97389 0.96994 0.92442 0.90214 0.94370 0.88943 0.88186 0.85886 0.86223 0.86305 0.85980 0.85628 0.94467 0.88586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.07 8.61 37.15 0.32 -2.75 16 2 C 0.10 1.96 2.26 -67.72 -0.15 1.80 16 3 H 0.07 1.45 7.80 -51.93 -0.41 1.04 16 4 C 0.02 0.38 3.71 -27.88 -0.10 0.28 16 5 C -0.57 -15.71 8.79 -34.44 -0.30 -16.01 16 6 H 0.05 1.45 7.75 -52.49 -0.41 1.04 16 7 C 0.01 0.29 5.46 -17.82 -0.10 0.20 16 8 N -0.92 -27.97 13.65 55.43 0.76 -27.21 16 9 Si 1.06 25.57 29.90 -169.99 -5.08 20.48 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.52 -9.59 4.01 -227.06 -0.91 -10.50 16 14 C 0.06 0.84 4.85 -3.93 -0.02 0.82 16 15 C -0.07 -1.04 6.69 37.29 0.25 -0.80 16 16 S -0.28 -4.23 21.39 -107.50 -2.30 -6.53 16 17 C 0.00 0.05 2.95 -27.75 -0.08 -0.03 16 18 H 0.11 1.99 7.89 -51.93 -0.41 1.58 16 19 C -0.06 -0.95 4.81 -104.63 -0.50 -1.45 16 20 C -0.10 -1.39 8.81 -39.58 -0.35 -1.74 16 21 C -0.12 -1.52 10.05 -39.58 -0.40 -1.92 16 22 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 23 C -0.12 -1.54 10.05 -39.58 -0.40 -1.93 16 24 C -0.10 -1.45 9.67 -39.58 -0.38 -1.83 16 25 C 0.07 1.27 3.19 -3.93 -0.01 1.26 16 26 H 0.04 0.62 7.34 -51.93 -0.38 0.24 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.87 6.51 -51.93 -0.34 0.54 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.01 0.31 5.78 -51.92 -0.30 0.01 16 31 H 0.27 8.03 7.19 -40.82 -0.29 7.74 16 32 H 0.08 1.14 7.74 -51.93 -0.40 0.74 16 33 H 0.04 0.56 7.37 -51.93 -0.38 0.17 16 34 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.12 1.66 7.58 -52.48 -0.40 1.26 16 37 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 39 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.13 1.80 7.95 -52.49 -0.42 1.38 16 41 H 0.04 0.62 6.31 -51.93 -0.33 0.29 16 42 H 0.10 1.97 5.80 -51.93 -0.30 1.67 16 LS Contribution 339.96 15.07 5.12 5.12 Total: -1.00 -30.08 339.96 -11.56 -41.63 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -6.52 Total: 2.93 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: -2.63 Total: -25.92 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: -0.15 Total: -37.71 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -5.08 Total: 20.48 kcal Atomic # 16 Polarization: -4.23 SS G_CDS: -2.30 Total: -6.53 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.08 -11.56 -41.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591014874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.907 kcal (2) G-P(sol) polarization free energy of solvation -30.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds