Wall clock time and date at job start Tue Mar 31 2020 06:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.47444 * 2 1 4 4 C 1.52998 * 109.47468 * 240.00222 * 2 1 3 5 5 C 1.50703 * 109.47523 * 176.67247 * 4 2 1 6 6 H 1.07993 * 119.99691 * 355.10702 * 5 4 2 7 7 C 1.37880 * 119.99919 * 175.10722 * 5 4 2 8 8 N 1.31513 * 120.00260 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99653 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46713 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47330 * 300.00109 * 9 7 5 12 12 H 1.48502 * 109.47101 * 60.00450 * 9 7 5 13 13 N 1.46905 * 109.47354 * 119.99946 * 2 1 3 14 14 C 1.46469 * 110.99827 * 288.68090 * 13 2 1 15 15 C 1.53250 * 109.85753 * 197.76518 * 14 13 2 16 16 S 1.81898 * 108.50603 * 297.99690 * 15 14 13 17 17 C 1.81906 * 101.91319 * 51.30859 * 16 15 14 18 18 H 1.08993 * 109.62997 * 68.40052 * 17 16 15 19 19 C 1.50697 * 109.62836 * 188.79316 * 17 16 15 20 20 C 1.38230 * 120.00385 * 59.72692 * 19 17 16 21 21 C 1.38244 * 120.00126 * 179.78349 * 20 19 17 22 22 C 1.38230 * 119.99520 * 0.44696 * 21 20 19 23 23 C 1.38236 * 120.00560 * 359.80471 * 22 21 20 24 24 C 1.38231 * 119.99607 * 359.97438 * 23 22 21 25 25 C 1.46467 * 110.99760 * 54.66234 * 13 2 1 26 26 H 1.08999 * 109.47351 * 304.06672 * 1 2 3 27 27 H 1.08993 * 109.47591 * 64.07064 * 1 2 3 28 28 H 1.09003 * 109.47062 * 184.07067 * 1 2 3 29 29 H 1.09005 * 109.46968 * 56.67014 * 4 2 1 30 30 H 1.09009 * 109.46974 * 296.67343 * 4 2 1 31 31 H 0.97003 * 119.99743 * 359.97438 * 8 7 5 32 32 H 1.08997 * 109.40941 * 317.88250 * 14 13 2 33 33 H 1.08997 * 109.40227 * 77.72706 * 14 13 2 34 34 H 1.08997 * 109.63259 * 57.70677 * 15 14 13 35 35 H 1.09005 * 109.62891 * 178.29844 * 15 14 13 36 36 H 1.08005 * 119.99919 * 359.97438 * 20 19 17 37 37 H 1.07994 * 119.99872 * 180.27205 * 21 20 19 38 38 H 1.08009 * 119.99796 * 179.83427 * 22 21 20 39 39 H 1.07998 * 119.99965 * 180.02562 * 23 22 21 40 40 H 1.07996 * 120.00065 * 179.97438 * 24 23 22 41 41 H 1.08993 * 109.40471 * 282.35087 * 25 13 2 42 42 H 1.09003 * 109.40808 * 42.11836 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5448 -0.6502 -1.2912 6 1 4.0790 -0.0751 -0.5495 7 6 4.2393 -1.3194 -2.2765 8 7 3.5886 -2.0193 -3.1800 9 14 6.1045 -1.2307 -2.3288 10 1 6.6060 -2.0308 -3.4749 11 1 6.5286 0.1834 -2.4883 12 1 6.6616 -1.7750 -1.0644 13 7 2.0197 -0.6925 1.1995 14 6 1.7817 0.1089 2.4021 15 6 2.6657 -0.3962 3.5476 16 16 2.2067 -2.1175 3.9152 17 6 2.2799 -2.8856 2.2678 18 1 3.3145 -2.9233 1.9270 19 6 1.7177 -4.2821 2.3351 20 6 0.4119 -4.4828 2.7419 21 6 -0.1052 -5.7636 2.7992 22 6 0.6865 -6.8443 2.4586 23 6 1.9939 -6.6442 2.0567 24 6 2.5095 -5.3631 1.9950 25 6 1.4490 -2.0378 1.2986 26 1 -0.3634 0.5756 0.8513 27 1 -0.3634 0.4493 -0.9241 28 1 -0.3633 -1.0251 0.0730 29 1 1.6288 -0.2429 -2.1382 30 1 1.7262 -1.7647 -1.2199 31 1 2.6201 -2.0650 -3.1530 32 1 2.0188 1.1524 2.1948 33 1 0.7340 0.0260 2.6911 34 1 3.7129 -0.3522 3.2487 35 1 2.5079 0.2216 4.4317 36 1 -0.2053 -3.6386 3.0120 37 1 -1.1267 -5.9199 3.1129 38 1 0.2834 -7.8453 2.5059 39 1 2.6122 -7.4886 1.7902 40 1 3.5310 -5.2066 1.6815 41 1 0.4241 -1.9704 1.6634 42 1 1.4518 -2.5059 0.3142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591014874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:51 Heat of formation + Delta-G solvation = 4.812153 kcal Electronic energy + Delta-G solvation = -21611.273373 eV Core-core repulsion = 18681.078954 eV Total energy + Delta-G solvation = -2930.194419 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.55733 -39.64451 -35.73948 -34.46735 -33.45195 -31.84823 -30.57343 -29.08740 -28.49458 -25.19009 -25.09964 -23.61204 -22.92714 -22.06225 -20.70722 -18.82073 -18.09257 -17.54309 -16.99575 -16.42950 -15.89416 -15.80953 -15.60521 -15.31884 -15.16270 -14.93101 -14.48120 -14.35383 -14.19015 -13.82698 -13.67836 -13.40848 -13.22777 -13.04632 -12.84343 -12.71944 -12.56913 -12.26379 -12.07426 -12.00016 -11.94110 -11.64646 -11.30653 -10.77866 -10.60986 -10.45955 -9.85757 -9.66363 -9.15414 -8.68866 -8.56033 -6.21561 0.14093 0.46667 0.98077 1.50113 1.51290 1.59399 1.77861 2.59675 2.74648 2.93167 3.27472 3.66703 3.73909 3.88923 3.95603 4.05772 4.13272 4.15851 4.20408 4.26573 4.33889 4.39776 4.43043 4.56706 4.58616 4.62343 4.70594 4.78000 4.87747 4.92287 5.00504 5.04145 5.08664 5.12704 5.20082 5.45625 5.52482 5.57485 5.63770 6.05944 6.06830 6.23451 6.29058 6.33826 6.72571 7.54832 8.84526 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012408 B = 0.006126 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.118203 B = 4569.388551 C = 5476.843853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.107 3.893 3 H 0.071 0.929 4 C 0.019 3.981 5 C -0.571 4.571 6 H 0.048 0.952 7 C -0.043 4.043 8 N -0.948 5.948 9 Si 1.109 2.891 10 H -0.288 1.288 11 H -0.270 1.270 12 H -0.277 1.277 13 N -0.544 5.544 14 C 0.057 3.943 15 C -0.071 4.071 16 S -0.268 6.268 17 C 0.007 3.993 18 H 0.074 0.926 19 C -0.082 4.082 20 C -0.110 4.110 21 C -0.123 4.123 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.125 4.125 25 C 0.086 3.914 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.048 0.952 29 H -0.012 1.012 30 H -0.008 1.008 31 H 0.252 0.748 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.133 0.867 36 H 0.126 0.874 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.143 0.857 40 H 0.115 0.885 41 H 0.050 0.950 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.219 -3.258 15.247 17.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.001 4.001 3 H 0.089 0.911 4 C -0.018 4.018 5 C -0.610 4.610 6 H 0.066 0.934 7 C -0.239 4.239 8 N -0.587 5.587 9 Si 0.932 3.068 10 H -0.214 1.214 11 H -0.195 1.195 12 H -0.202 1.202 13 N -0.268 5.268 14 C -0.072 4.072 15 C -0.219 4.219 16 S -0.039 6.039 17 C -0.122 4.122 18 H 0.092 0.908 19 C -0.084 4.084 20 C -0.129 4.129 21 C -0.140 4.140 22 C -0.136 4.136 23 C -0.142 4.142 24 C -0.144 4.144 25 C -0.044 4.044 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.006 0.994 30 H 0.010 0.990 31 H 0.061 0.939 32 H 0.110 0.890 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.151 0.849 36 H 0.144 0.856 37 H 0.167 0.833 38 H 0.170 0.830 39 H 0.161 0.839 40 H 0.133 0.867 41 H 0.068 0.932 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.624 -4.204 15.412 16.936 hybrid contribution -1.633 1.153 -0.774 2.144 sum -7.257 -3.051 14.638 16.620 Atomic orbital electron populations 1.22420 0.96797 1.01630 1.02449 1.21470 0.92112 0.97028 0.89444 0.91055 1.19258 0.96164 0.94015 0.92368 1.22191 0.92723 1.32435 1.13632 0.93398 1.27120 1.10588 0.93360 0.92877 1.70927 1.09300 1.41743 1.36717 0.83019 0.70333 0.77147 0.76277 1.21356 1.19540 1.20227 1.61029 1.61070 1.02080 1.02650 1.22253 0.97920 0.97991 0.89007 1.23591 1.02805 0.93531 1.02013 1.86648 1.91594 1.10932 1.14711 1.21973 1.01952 0.94251 0.94034 0.90783 1.19355 0.95366 0.92384 1.01316 1.21143 0.94211 0.98447 0.99096 1.21467 1.01078 0.91830 0.99656 1.21549 0.93685 1.00269 0.98138 1.21410 0.96755 0.96463 0.99566 1.21235 0.99912 0.93217 1.00086 1.21983 0.94983 0.89296 0.98095 0.91078 0.92245 0.93307 0.99423 0.99004 0.93894 0.88962 0.93013 0.90142 0.84869 0.85579 0.83272 0.82992 0.83907 0.86736 0.93201 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.58 8.61 71.98 0.62 -4.96 16 2 C 0.11 4.22 2.26 44.91 0.10 4.32 16 3 H 0.07 2.81 7.80 -2.38 -0.02 2.79 16 4 C 0.02 0.97 3.71 29.85 0.11 1.08 16 5 C -0.57 -32.28 8.79 25.60 0.23 -32.06 16 6 H 0.05 2.70 7.75 -2.91 -0.02 2.68 16 7 C -0.04 -2.54 5.46 84.66 0.46 -2.08 16 8 N -0.95 -59.59 13.65 21.45 0.29 -59.30 16 9 Si 1.11 52.03 29.90 68.60 2.05 54.08 16 10 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 12 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 13 N -0.54 -19.93 4.01 -872.28 -3.49 -23.42 16 14 C 0.06 1.61 4.85 86.47 0.42 2.03 16 15 C -0.07 -1.85 6.69 72.07 0.48 -1.37 16 16 S -0.27 -7.93 21.39 -56.49 -1.21 -9.13 16 17 C 0.01 0.23 2.95 29.93 0.09 0.32 16 18 H 0.07 2.95 7.89 -2.39 -0.02 2.93 16 19 C -0.08 -2.59 4.81 -19.87 -0.10 -2.69 16 20 C -0.11 -2.98 8.81 22.27 0.20 -2.78 16 21 C -0.12 -2.72 10.05 22.27 0.22 -2.49 16 22 C -0.12 -2.49 10.05 22.27 0.22 -2.27 16 23 C -0.12 -3.04 10.05 22.27 0.22 -2.82 16 24 C -0.12 -3.80 9.67 22.27 0.22 -3.58 16 25 C 0.09 3.11 3.19 86.47 0.28 3.39 16 26 H 0.07 1.88 7.34 -2.39 -0.02 1.87 16 27 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.05 1.59 6.51 -2.39 -0.02 1.58 16 29 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 30 H -0.01 -0.45 5.78 -2.38 -0.01 -0.46 16 31 H 0.25 16.03 7.19 -92.71 -0.67 15.36 16 32 H 0.09 2.38 7.74 -2.39 -0.02 2.37 16 33 H 0.05 1.34 7.37 -2.39 -0.02 1.33 16 34 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.13 2.63 8.14 -2.38 -0.02 2.61 16 36 H 0.13 3.25 7.58 -2.91 -0.02 3.23 16 37 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 38 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 39 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 40 H 0.11 3.57 7.95 -2.91 -0.02 3.55 16 41 H 0.05 1.65 6.31 -2.39 -0.02 1.63 16 42 H 0.06 2.51 5.80 -2.39 -0.01 2.49 16 Total: -1.00 -67.01 339.96 2.50 -64.51 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 1.09 Total: 19.24 kcal Atomic # 6 Polarization: -49.74 SS G_CDS: 3.77 Total: -45.97 kcal Atomic # 7 Polarization: -79.51 SS G_CDS: -3.20 Total: -82.72 kcal Atomic # 14 Polarization: 52.03 SS G_CDS: 2.05 Total: 54.08 kcal Atomic # 16 Polarization: -7.93 SS G_CDS: -1.21 Total: -9.13 kcal Total: -67.01 2.50 -64.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591014874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.319 kcal (2) G-P(sol) polarization free energy of solvation -67.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds