Wall clock time and date at job start Tue Mar 31 2020 06:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46678 * 2 1 4 4 C 1.53002 * 109.47399 * 120.00093 * 2 1 3 5 5 C 1.50696 * 109.47221 * 184.65069 * 4 2 1 6 6 H 1.07995 * 120.00062 * 355.48855 * 5 4 2 7 7 C 1.37875 * 119.99990 * 175.49142 * 5 4 2 8 8 N 1.31515 * 120.00010 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99749 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47456 * 90.00157 * 9 7 5 11 11 H 1.48506 * 109.46801 * 210.00208 * 9 7 5 12 12 H 1.48494 * 109.47357 * 329.99484 * 9 7 5 13 13 N 1.46897 * 109.47123 * 240.00274 * 2 1 3 14 14 C 1.46468 * 110.99957 * 72.60061 * 13 2 1 15 15 C 1.53247 * 109.86248 * 162.23567 * 14 13 2 16 16 S 1.81898 * 108.50739 * 62.00024 * 15 14 13 17 17 C 1.81906 * 101.91315 * 308.69950 * 16 15 14 18 18 H 1.08997 * 109.62942 * 291.39722 * 17 16 15 19 19 C 1.50700 * 109.62886 * 171.00981 * 17 16 15 20 20 C 1.38236 * 120.00208 * 299.72277 * 19 17 16 21 21 C 1.38233 * 120.00028 * 179.76630 * 20 19 17 22 22 C 1.38230 * 120.00069 * 0.51489 * 21 20 19 23 23 C 1.38235 * 119.99943 * 359.73989 * 22 21 20 24 24 C 1.38234 * 120.00199 * 0.02562 * 23 22 21 25 25 C 1.46470 * 111.00134 * 306.61900 * 13 2 1 26 26 H 1.09000 * 109.47576 * 65.13878 * 1 2 3 27 27 H 1.08999 * 109.46976 * 185.13802 * 1 2 3 28 28 H 1.09001 * 109.47267 * 305.13417 * 1 2 3 29 29 H 1.09004 * 109.46799 * 304.65362 * 4 2 1 30 30 H 1.08999 * 109.46469 * 64.64856 * 4 2 1 31 31 H 0.97005 * 119.99755 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.40584 * 282.35116 * 14 13 2 33 33 H 1.08995 * 109.41114 * 42.19408 * 14 13 2 34 34 H 1.09001 * 109.63777 * 181.70780 * 15 14 13 35 35 H 1.09008 * 109.63129 * 302.10298 * 15 14 13 36 36 H 1.08000 * 119.99573 * 0.02562 * 20 19 17 37 37 H 1.07998 * 120.00080 * 180.22902 * 21 20 19 38 38 H 1.08004 * 120.00063 * 179.72449 * 22 21 20 39 39 H 1.08000 * 120.00062 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.00450 * 179.97438 * 24 23 22 41 41 H 1.08995 * 109.40668 * 317.88624 * 25 13 2 42 42 H 1.09005 * 109.40642 * 77.64550 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5426 -0.6223 1.3081 6 1 4.0856 -0.1614 0.4963 7 6 4.2241 -1.1201 2.3985 8 7 5.5354 -1.0341 2.4496 9 14 3.2848 -1.9178 3.8023 10 1 3.1432 -3.3726 3.5396 11 1 4.0262 -1.7140 5.0728 12 1 1.9383 -1.3010 3.9106 13 7 2.0196 -0.6924 -1.1994 14 6 1.8091 0.1221 -2.3984 15 6 2.6957 -0.3906 -3.5384 16 16 2.2094 -2.1005 -3.9239 17 6 2.2510 -2.8819 -2.2817 18 1 3.2815 -2.9443 -1.9319 19 6 1.6598 -4.2656 -2.3644 20 6 0.3502 -4.4344 -2.7737 21 6 -0.1905 -5.7040 -2.8542 22 6 0.5749 -6.8041 -2.5152 23 6 1.8828 -6.6349 -2.1010 24 6 2.4251 -5.3657 -2.0251 25 6 1.4256 -2.0263 -1.3148 26 1 -0.3634 0.4320 -0.9324 27 1 -0.3633 -1.0235 0.0920 28 1 -0.3634 0.5914 0.8404 29 1 1.6102 -0.2578 2.1373 30 1 1.7463 -1.7701 1.2084 31 1 6.0148 -1.3847 3.2166 32 1 0.7628 0.0616 -2.6982 33 1 2.0642 1.1592 -2.1812 34 1 2.5587 0.2365 -4.4194 35 1 3.7408 -0.3648 -3.2295 36 1 -0.2490 -3.5746 -3.0345 37 1 -1.2125 -5.8362 -3.1774 38 1 0.1509 -7.7957 -2.5739 39 1 2.4807 -7.4943 -1.8358 40 1 3.4469 -5.2334 -1.7011 41 1 1.4094 -2.5016 -0.3341 42 1 0.4060 -1.9375 -1.6898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591014875.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:56 Heat of formation + Delta-G solvation = 27.227973 kcal Electronic energy + Delta-G solvation = -21549.287965 eV Core-core repulsion = 18620.065569 eV Total energy + Delta-G solvation = -2929.222396 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.40815 -38.32205 -33.80821 -32.99456 -31.88000 -30.85462 -29.38249 -28.14308 -27.21329 -23.90963 -23.16978 -22.53128 -21.26259 -20.89915 -19.02361 -16.97431 -16.62605 -16.37325 -15.61672 -15.30935 -14.77978 -14.62996 -14.20149 -13.83547 -13.75669 -13.37949 -13.18026 -13.06589 -12.52781 -12.50396 -12.41047 -12.25702 -12.01408 -11.68930 -11.55804 -11.26305 -11.09963 -10.96659 -10.76422 -10.48452 -10.03388 -9.85298 -9.62948 -9.52415 -9.07865 -8.85334 -8.61194 -8.47054 -7.76246 -7.41879 -5.95797 -3.90529 1.21217 1.47010 2.16278 2.74215 3.32009 3.40102 3.41480 3.87732 4.18187 4.49736 4.82827 4.91425 5.03605 5.13180 5.18006 5.20873 5.35456 5.43456 5.44955 5.48878 5.56626 5.59372 5.62976 5.75212 5.80792 5.91920 5.93752 6.04817 6.08978 6.13128 6.22121 6.34870 6.44108 6.50436 6.54963 6.67374 6.70611 7.03888 7.04974 7.23976 7.63851 7.69851 7.87532 8.66629 9.16552 9.67098 11.17926 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012678 B = 0.006171 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.939088 B = 4536.429825 C = 5612.580253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.102 3.898 3 H 0.078 0.922 4 C -0.009 4.009 5 C -0.492 4.492 6 H 0.079 0.921 7 C 0.063 3.937 8 N -0.906 5.906 9 Si 0.870 3.130 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.268 1.268 13 N -0.524 5.524 14 C 0.057 3.943 15 C -0.075 4.075 16 S -0.276 6.276 17 C 0.001 3.999 18 H 0.109 0.891 19 C -0.062 4.062 20 C -0.099 4.099 21 C -0.124 4.124 22 C -0.122 4.122 23 C -0.121 4.121 24 C -0.099 4.099 25 C 0.071 3.929 26 H 0.044 0.956 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.021 0.979 30 H 0.011 0.989 31 H 0.260 0.740 32 H 0.038 0.962 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.094 0.906 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.068 -5.435 -11.290 16.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.006 4.006 3 H 0.097 0.903 4 C -0.046 4.046 5 C -0.531 4.531 6 H 0.097 0.903 7 C -0.136 4.136 8 N -0.546 5.546 9 Si 0.698 3.302 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.193 1.193 13 N -0.247 5.247 14 C -0.073 4.073 15 C -0.223 4.223 16 S -0.047 6.047 17 C -0.127 4.127 18 H 0.127 0.873 19 C -0.063 4.063 20 C -0.119 4.119 21 C -0.142 4.142 22 C -0.140 4.140 23 C -0.140 4.140 24 C -0.119 4.119 25 C -0.059 4.059 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.039 0.961 30 H 0.030 0.970 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.118 0.882 35 H 0.112 0.888 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.144 0.856 41 H 0.112 0.888 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.645 -5.919 -12.155 17.208 hybrid contribution -0.828 0.128 1.882 2.060 sum -11.473 -5.791 -10.273 16.453 Atomic orbital electron populations 1.22574 0.99342 1.01585 1.00985 1.21695 0.90043 0.98368 0.90466 0.90339 1.19739 0.98158 0.94934 0.91772 1.21026 0.89263 1.37780 1.04998 0.90268 1.25005 0.94652 0.95999 0.97992 1.69909 1.06546 1.47562 1.30591 0.86945 0.80514 0.80176 0.82604 1.20521 1.21558 1.19253 1.61112 1.59935 1.01744 1.01947 1.22175 0.96959 0.97873 0.90290 1.23516 1.03856 0.93893 1.01060 1.86719 1.91176 1.10873 1.15943 1.22179 1.04024 0.93036 0.93490 0.87314 1.19343 0.94234 0.93143 0.99619 1.21043 0.94734 0.97411 0.98669 1.21085 0.99772 0.92574 1.00798 1.21130 0.94520 0.98612 0.99771 1.21111 0.95613 0.97021 1.00211 1.21141 1.00100 0.91924 0.98751 1.22195 0.94148 0.89860 0.99665 0.93687 0.92925 0.92377 0.96058 0.97046 0.93021 0.94345 0.90022 0.88185 0.88752 0.85827 0.86233 0.86341 0.86021 0.85553 0.88802 0.94330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.86 8.45 37.16 0.31 -2.55 16 2 C 0.10 1.90 2.24 -67.71 -0.15 1.75 16 3 H 0.08 1.50 7.77 -51.93 -0.40 1.10 16 4 C -0.01 -0.20 3.48 -27.88 -0.10 -0.29 16 5 C -0.49 -13.52 9.38 -34.44 -0.32 -13.84 16 6 H 0.08 2.38 7.98 -52.49 -0.42 1.97 16 7 C 0.06 1.82 5.47 -17.82 -0.10 1.72 16 8 N -0.91 -27.77 13.96 55.43 0.77 -27.00 16 9 Si 0.87 21.54 27.56 -169.99 -4.68 16.85 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.35 6.41 56.52 0.36 -5.98 16 13 N -0.52 -9.30 4.02 -227.06 -0.91 -10.21 16 14 C 0.06 0.84 4.89 -3.93 -0.02 0.82 16 15 C -0.07 -1.05 6.69 37.29 0.25 -0.80 16 16 S -0.28 -4.16 21.40 -107.50 -2.30 -6.46 16 17 C 0.00 0.02 2.96 -27.76 -0.08 -0.06 16 18 H 0.11 1.98 7.89 -51.93 -0.41 1.57 16 19 C -0.06 -0.91 4.81 -104.62 -0.50 -1.41 16 20 C -0.10 -1.32 8.81 -39.58 -0.35 -1.67 16 21 C -0.12 -1.45 10.05 -39.59 -0.40 -1.85 16 22 C -0.12 -1.37 10.05 -39.59 -0.40 -1.77 16 23 C -0.12 -1.48 10.05 -39.58 -0.40 -1.87 16 24 C -0.10 -1.40 9.67 -39.58 -0.38 -1.78 16 25 C 0.07 1.18 3.15 -3.93 -0.01 1.17 16 26 H 0.04 0.62 7.01 -51.93 -0.36 0.25 16 27 H 0.05 0.81 7.03 -51.93 -0.36 0.44 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.02 0.49 6.88 -51.93 -0.36 0.14 16 30 H 0.01 0.26 5.78 -51.93 -0.30 -0.04 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.04 0.54 7.18 -51.93 -0.37 0.17 16 33 H 0.08 1.15 7.72 -51.93 -0.40 0.75 16 34 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.09 1.45 8.14 -51.92 -0.42 1.03 16 36 H 0.12 1.58 7.53 -52.49 -0.40 1.19 16 37 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 38 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 39 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.13 1.74 7.95 -52.49 -0.42 1.32 16 41 H 0.09 1.76 5.86 -51.93 -0.30 1.45 16 42 H 0.04 0.60 6.46 -51.93 -0.34 0.27 16 LS Contribution 337.66 15.07 5.09 5.09 Total: -1.00 -30.11 337.66 -11.24 -41.35 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -6.55 Total: 2.82 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -2.65 Total: -22.44 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: -0.14 Total: -37.21 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.68 Total: 16.85 kcal Atomic # 16 Polarization: -4.16 SS G_CDS: -2.30 Total: -6.46 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.11 -11.24 -41.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591014875.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.579 kcal (2) G-P(sol) polarization free energy of solvation -30.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds