Wall clock time and date at job start Tue Mar 31 2020 06:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46678 * 2 1 4 4 C 1.53002 * 109.47399 * 120.00093 * 2 1 3 5 5 C 1.50696 * 109.47221 * 184.65069 * 4 2 1 6 6 H 1.07995 * 120.00062 * 355.48855 * 5 4 2 7 7 C 1.37875 * 119.99990 * 175.49142 * 5 4 2 8 8 N 1.31515 * 120.00010 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99749 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47456 * 90.00157 * 9 7 5 11 11 H 1.48506 * 109.46801 * 210.00208 * 9 7 5 12 12 H 1.48494 * 109.47357 * 329.99484 * 9 7 5 13 13 N 1.46897 * 109.47123 * 240.00274 * 2 1 3 14 14 C 1.46468 * 110.99957 * 72.60061 * 13 2 1 15 15 C 1.53247 * 109.86248 * 162.23567 * 14 13 2 16 16 S 1.81898 * 108.50739 * 62.00024 * 15 14 13 17 17 C 1.81906 * 101.91315 * 308.69950 * 16 15 14 18 18 H 1.08997 * 109.62942 * 291.39722 * 17 16 15 19 19 C 1.50700 * 109.62886 * 171.00981 * 17 16 15 20 20 C 1.38236 * 120.00208 * 299.72277 * 19 17 16 21 21 C 1.38233 * 120.00028 * 179.76630 * 20 19 17 22 22 C 1.38230 * 120.00069 * 0.51489 * 21 20 19 23 23 C 1.38235 * 119.99943 * 359.73989 * 22 21 20 24 24 C 1.38234 * 120.00199 * 0.02562 * 23 22 21 25 25 C 1.46470 * 111.00134 * 306.61900 * 13 2 1 26 26 H 1.09000 * 109.47576 * 65.13878 * 1 2 3 27 27 H 1.08999 * 109.46976 * 185.13802 * 1 2 3 28 28 H 1.09001 * 109.47267 * 305.13417 * 1 2 3 29 29 H 1.09004 * 109.46799 * 304.65362 * 4 2 1 30 30 H 1.08999 * 109.46469 * 64.64856 * 4 2 1 31 31 H 0.97005 * 119.99755 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.40584 * 282.35116 * 14 13 2 33 33 H 1.08995 * 109.41114 * 42.19408 * 14 13 2 34 34 H 1.09001 * 109.63777 * 181.70780 * 15 14 13 35 35 H 1.09008 * 109.63129 * 302.10298 * 15 14 13 36 36 H 1.08000 * 119.99573 * 0.02562 * 20 19 17 37 37 H 1.07998 * 120.00080 * 180.22902 * 21 20 19 38 38 H 1.08004 * 120.00063 * 179.72449 * 22 21 20 39 39 H 1.08000 * 120.00062 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.00450 * 179.97438 * 24 23 22 41 41 H 1.08995 * 109.40668 * 317.88624 * 25 13 2 42 42 H 1.09005 * 109.40642 * 77.64550 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5426 -0.6223 1.3081 6 1 4.0856 -0.1614 0.4963 7 6 4.2241 -1.1201 2.3985 8 7 5.5354 -1.0341 2.4496 9 14 3.2848 -1.9178 3.8023 10 1 3.1432 -3.3726 3.5396 11 1 4.0262 -1.7140 5.0728 12 1 1.9383 -1.3010 3.9106 13 7 2.0196 -0.6924 -1.1994 14 6 1.8091 0.1221 -2.3984 15 6 2.6957 -0.3906 -3.5384 16 16 2.2094 -2.1005 -3.9239 17 6 2.2510 -2.8819 -2.2817 18 1 3.2815 -2.9443 -1.9319 19 6 1.6598 -4.2656 -2.3644 20 6 0.3502 -4.4344 -2.7737 21 6 -0.1905 -5.7040 -2.8542 22 6 0.5749 -6.8041 -2.5152 23 6 1.8828 -6.6349 -2.1010 24 6 2.4251 -5.3657 -2.0251 25 6 1.4256 -2.0263 -1.3148 26 1 -0.3634 0.4320 -0.9324 27 1 -0.3633 -1.0235 0.0920 28 1 -0.3634 0.5914 0.8404 29 1 1.6102 -0.2578 2.1373 30 1 1.7463 -1.7701 1.2084 31 1 6.0148 -1.3847 3.2166 32 1 0.7628 0.0616 -2.6982 33 1 2.0642 1.1592 -2.1812 34 1 2.5587 0.2365 -4.4194 35 1 3.7408 -0.3648 -3.2295 36 1 -0.2490 -3.5746 -3.0345 37 1 -1.2125 -5.8362 -3.1774 38 1 0.1509 -7.7957 -2.5739 39 1 2.4807 -7.4943 -1.8358 40 1 3.4469 -5.2334 -1.7011 41 1 1.4094 -2.5016 -0.3341 42 1 0.4060 -1.9375 -1.6898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591014875.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:56 Heat of formation + Delta-G solvation = 10.977726 kcal Electronic energy + Delta-G solvation = -21549.992629 eV Core-core repulsion = 18620.065569 eV Total energy + Delta-G solvation = -2929.927060 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.51341 -39.58464 -35.41935 -34.39485 -33.58343 -31.81781 -30.65089 -29.84405 -28.45990 -25.10116 -24.93065 -23.55320 -22.67519 -22.01475 -20.49677 -18.78894 -18.06558 -17.50225 -16.93445 -16.56494 -16.24159 -15.84708 -15.62585 -15.11864 -15.07343 -14.64240 -14.42646 -14.30750 -14.17449 -13.88210 -13.66062 -13.56801 -13.35757 -13.27352 -12.83980 -12.60048 -12.59179 -12.18578 -11.96642 -11.84377 -11.73161 -11.52969 -11.40529 -11.18962 -10.75613 -10.65166 -9.82750 -9.63295 -9.07990 -8.65556 -8.18932 -6.17601 0.17239 0.49743 1.01774 1.34836 1.35929 1.46047 1.53190 2.39572 2.80262 2.96518 3.17722 3.70651 3.78937 3.93633 4.00977 4.12197 4.16855 4.22488 4.23943 4.30002 4.40071 4.43529 4.53620 4.60524 4.63611 4.66190 4.75793 4.82565 4.94869 4.99030 5.04774 5.09529 5.15651 5.16789 5.21984 5.52180 5.55770 5.60710 5.67519 5.73450 6.09772 6.25278 6.32848 6.49543 6.91009 7.43208 8.98228 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012678 B = 0.006171 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.939088 B = 4536.429825 C = 5612.580253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.105 3.895 3 H 0.069 0.931 4 C -0.006 4.006 5 C -0.487 4.487 6 H 0.037 0.963 7 C 0.000 4.000 8 N -0.957 5.957 9 Si 0.937 3.063 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.245 1.245 13 N -0.552 5.552 14 C 0.060 3.940 15 C -0.072 4.072 16 S -0.270 6.270 17 C 0.005 3.995 18 H 0.071 0.929 19 C -0.081 4.081 20 C -0.107 4.107 21 C -0.122 4.122 22 C -0.118 4.118 23 C -0.125 4.125 24 C -0.125 4.125 25 C 0.082 3.918 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.024 0.976 30 H 0.013 0.987 31 H 0.260 0.740 32 H 0.056 0.944 33 H 0.088 0.912 34 H 0.131 0.869 35 H 0.073 0.927 36 H 0.128 0.872 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.141 0.859 40 H 0.113 0.887 41 H 0.069 0.931 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.420 -6.378 -11.944 19.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.003 4.003 3 H 0.088 0.912 4 C -0.043 4.043 5 C -0.525 4.525 6 H 0.056 0.944 7 C -0.196 4.196 8 N -0.599 5.599 9 Si 0.762 3.238 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.169 1.169 13 N -0.276 5.276 14 C -0.069 4.069 15 C -0.221 4.221 16 S -0.041 6.041 17 C -0.124 4.124 18 H 0.089 0.911 19 C -0.083 4.083 20 C -0.127 4.127 21 C -0.139 4.139 22 C -0.136 4.136 23 C -0.143 4.143 24 C -0.145 4.145 25 C -0.047 4.047 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.043 0.957 30 H 0.031 0.969 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.149 0.851 35 H 0.091 0.909 36 H 0.146 0.854 37 H 0.167 0.833 38 H 0.169 0.831 39 H 0.159 0.841 40 H 0.131 0.869 41 H 0.087 0.913 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.020 -6.853 -12.825 20.199 hybrid contribution 0.290 0.420 1.985 2.049 sum -13.730 -6.434 -10.840 18.639 Atomic orbital electron populations 1.22425 0.96128 1.02131 1.02607 1.21492 0.92505 0.97113 0.89154 0.91249 1.19680 0.94774 0.95618 0.94277 1.21265 0.91834 1.36108 1.03326 0.94436 1.25897 0.95457 0.97030 1.01168 1.70078 1.08546 1.49592 1.31718 0.85861 0.79968 0.79220 0.78793 1.20074 1.21493 1.16864 1.61004 1.61096 1.02602 1.02912 1.22206 0.98004 0.97623 0.89068 1.23570 1.02495 0.93886 1.02139 1.86629 1.90912 1.11413 1.15121 1.22011 1.01913 0.94443 0.94045 0.91054 1.19338 0.95301 0.92274 1.01339 1.21149 0.93978 0.98634 0.98897 1.21462 1.01109 0.91782 0.99584 1.21537 0.93832 1.00128 0.98139 1.21393 0.96556 0.96623 0.99681 1.21229 0.99939 0.93132 1.00194 1.22058 0.94990 0.89200 0.98491 0.91507 0.92746 0.91443 0.95745 0.96923 0.93117 0.92552 0.89390 0.85124 0.90854 0.85362 0.83270 0.83115 0.84074 0.86877 0.91294 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.90 8.45 71.98 0.61 -4.30 16 2 C 0.11 3.86 2.24 44.92 0.10 3.96 16 3 H 0.07 2.64 7.77 -2.39 -0.02 2.62 16 4 C -0.01 -0.27 3.48 29.85 0.10 -0.17 16 5 C -0.49 -27.68 9.38 25.60 0.24 -27.44 16 6 H 0.04 2.39 7.98 -2.91 -0.02 2.37 16 7 C 0.00 -0.03 5.47 84.65 0.46 0.43 16 8 N -0.96 -61.03 13.96 21.45 0.30 -60.73 16 9 Si 0.94 44.89 27.56 68.60 1.89 46.78 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 12 H -0.25 -10.76 6.41 99.48 0.64 -10.12 16 13 N -0.55 -19.66 4.02 -872.29 -3.51 -23.17 16 14 C 0.06 1.70 4.89 86.47 0.42 2.12 16 15 C -0.07 -1.98 6.69 72.06 0.48 -1.50 16 16 S -0.27 -8.01 21.40 -56.49 -1.21 -9.22 16 17 C 0.00 0.16 2.96 29.93 0.09 0.25 16 18 H 0.07 2.83 7.89 -2.39 -0.02 2.81 16 19 C -0.08 -2.40 4.81 -19.86 -0.10 -2.49 16 20 C -0.11 -2.69 8.81 22.27 0.20 -2.49 16 21 C -0.12 -2.47 10.05 22.27 0.22 -2.24 16 22 C -0.12 -2.30 10.05 22.27 0.22 -2.07 16 23 C -0.12 -2.86 10.05 22.27 0.22 -2.64 16 24 C -0.13 -3.61 9.67 22.27 0.22 -3.40 16 25 C 0.08 2.74 3.15 86.47 0.27 3.02 16 26 H 0.07 1.60 7.01 -2.39 -0.02 1.59 16 27 H 0.05 1.52 7.03 -2.39 -0.02 1.50 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.02 1.10 6.88 -2.38 -0.02 1.08 16 30 H 0.01 0.58 5.78 -2.39 -0.01 0.57 16 31 H 0.26 15.64 8.31 -92.70 -0.77 14.87 16 32 H 0.06 1.41 7.18 -2.39 -0.02 1.40 16 33 H 0.09 2.37 7.72 -2.39 -0.02 2.35 16 34 H 0.13 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 36 H 0.13 3.02 7.53 -2.91 -0.02 3.00 16 37 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 38 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 39 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 40 H 0.11 3.40 7.95 -2.91 -0.02 3.38 16 41 H 0.07 2.63 5.86 -2.39 -0.01 2.61 16 42 H 0.06 1.65 6.46 -2.38 -0.02 1.64 16 Total: -1.00 -67.67 337.66 2.16 -65.51 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.92 Total: 19.80 kcal Atomic # 6 Polarization: -42.74 SS G_CDS: 3.77 Total: -38.97 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -3.21 Total: -83.90 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.89 Total: 46.78 kcal Atomic # 16 Polarization: -8.01 SS G_CDS: -1.21 Total: -9.22 kcal Total: -67.67 2.16 -65.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591014875.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.492 kcal (2) G-P(sol) polarization free energy of solvation -67.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds