Wall clock time and date at job start Tue Mar 31 2020 08:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00162 * 2 1 4 4 H 1.48496 * 109.46977 * 269.99672 * 3 2 1 5 5 H 1.48498 * 109.46992 * 29.99901 * 3 2 1 6 6 H 1.48497 * 109.46893 * 149.99533 * 3 2 1 7 7 C 1.37875 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00479 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99858 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47139 * 179.97438 * 9 7 2 11 11 C 1.39961 * 120.00019 * 180.02562 * 10 9 7 12 12 C 1.38728 * 120.08962 * 359.97438 * 11 10 9 13 13 C 1.38225 * 119.97746 * 179.97438 * 12 11 10 14 14 C 1.38252 * 120.16430 * 0.02562 * 13 12 11 15 15 C 1.38284 * 120.17724 * 359.97438 * 14 13 12 16 16 C 1.38505 * 120.02033 * 359.97438 * 15 14 13 17 17 O 1.36012 * 120.07935 * 180.02562 * 16 15 14 18 18 C 1.42899 * 116.99964 * 0.02562 * 17 16 15 19 19 C 1.53005 * 109.47003 * 179.97438 * 18 17 16 20 20 H 1.09004 * 109.48274 * 305.02710 * 19 18 17 21 21 C 1.53089 * 109.48052 * 184.99979 * 19 18 17 22 22 C 1.53180 * 109.16232 * 182.40855 * 21 19 18 23 23 C 1.53177 * 109.03632 * 56.98544 * 22 21 19 24 24 C 1.53100 * 109.16029 * 303.01626 * 23 22 21 25 25 O 1.42897 * 109.41341 * 57.61166 * 24 23 22 26 26 H 0.97000 * 119.99491 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47179 * 59.99565 * 9 7 2 28 28 H 1.08998 * 109.46641 * 299.99606 * 9 7 2 29 29 H 0.97001 * 119.99899 * 359.97438 * 10 9 7 30 30 H 1.07996 * 120.00855 * 0.25518 * 12 11 10 31 31 H 1.08002 * 119.91215 * 180.02562 * 13 12 11 32 32 H 1.07996 * 119.90982 * 179.97438 * 14 13 12 33 33 H 1.08005 * 119.98826 * 180.02562 * 15 14 13 34 34 H 1.08998 * 109.47456 * 299.99337 * 18 17 16 35 35 H 1.08997 * 109.47243 * 60.00480 * 18 17 16 36 36 H 1.08999 * 109.52093 * 302.31329 * 21 19 18 37 37 H 1.09000 * 109.52526 * 62.44206 * 21 19 18 38 38 H 1.08999 * 109.54486 * 176.84504 * 22 21 19 39 39 H 1.08999 * 109.54419 * 297.02671 * 22 21 19 40 40 H 1.08991 * 109.52705 * 62.91982 * 23 22 21 41 41 H 1.09003 * 109.52476 * 183.11685 * 23 22 21 42 42 H 1.09002 * 109.48050 * 177.59378 * 24 23 22 43 43 H 1.08996 * 109.47997 * 297.61744 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7363 -4.9323 0.0000 12 6 0.3728 -5.1879 0.0000 13 6 -0.0855 -6.4919 -0.0011 14 6 0.8120 -7.5436 -0.0016 15 6 2.1725 -7.2964 -0.0016 16 6 2.6399 -5.9926 -0.0016 17 8 3.9779 -5.7481 -0.0022 18 6 4.8450 -6.8840 -0.0033 19 6 6.3011 -6.4141 -0.0044 20 1 6.4652 -5.7408 -0.8458 21 6 7.2284 -7.6255 -0.1313 22 6 8.6842 -7.1528 -0.0711 23 6 8.9066 -6.3850 1.2355 24 6 7.9144 -5.2214 1.3097 25 8 6.5812 -5.7274 1.2173 26 1 -0.4849 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5566 0.8903 29 1 3.1566 -3.4355 0.0002 30 1 -0.3304 -4.3682 -0.0038 31 1 -1.1472 -6.6897 -0.0015 32 1 0.4494 -8.5609 -0.0020 33 1 2.8709 -8.1203 -0.0025 34 1 4.6576 -7.4851 0.8865 35 1 4.6566 -7.4840 -0.8935 36 1 7.0363 -8.3186 0.6877 37 1 7.0460 -8.1258 -1.0824 38 1 9.3494 -8.0156 -0.1047 39 1 8.8909 -6.4998 -0.9191 40 1 8.7484 -7.0531 2.0820 41 1 9.9250 -5.9974 1.2615 42 1 8.0393 -4.6970 2.2571 43 1 8.0998 -4.5325 0.4857 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591773392.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:06 Heat of formation + Delta-G solvation = -72.476887 kcal Electronic energy + Delta-G solvation = -23005.713675 eV Core-core repulsion = 19629.414881 eV Total energy + Delta-G solvation = -3376.298794 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.97488 -39.21627 -36.97317 -34.83866 -33.82631 -32.62142 -32.27915 -29.49708 -29.05257 -27.23904 -26.08614 -24.44309 -23.30223 -22.29354 -21.47840 -20.52206 -20.31203 -17.88002 -16.88832 -16.74116 -16.25031 -15.71267 -15.42650 -14.97194 -14.81093 -14.70118 -14.45069 -14.23228 -13.72112 -13.45913 -13.07108 -12.96321 -12.89010 -12.52024 -12.15759 -11.96602 -11.87124 -11.51741 -11.37589 -11.15043 -10.93055 -10.89367 -10.84392 -10.66988 -10.54151 -10.41015 -10.04568 -9.58543 -9.37361 -9.32167 -8.47869 -7.97919 -6.28263 -6.15060 -4.19125 1.96988 2.21916 3.26928 3.32824 3.36662 3.41795 3.61443 4.31322 4.45128 4.50284 4.55947 4.60036 4.66985 4.78690 4.95517 4.99799 5.19446 5.22157 5.24705 5.33570 5.37962 5.47175 5.50555 5.54099 5.59545 5.63478 5.72406 5.78653 5.83863 6.00210 6.05257 6.23160 6.42521 6.72894 6.87267 7.12976 7.14108 7.21092 7.39158 7.50423 7.65286 7.86138 8.03363 8.42248 8.78142 9.01621 9.46828 10.95756 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011367 B = 0.004393 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.708270 B = 6372.560492 C = 8656.092328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.062 0.938 9 C 0.252 3.748 10 N -0.723 5.723 11 C 0.218 3.782 12 C -0.180 4.180 13 C -0.100 4.100 14 C -0.172 4.172 15 C -0.163 4.163 16 C 0.033 3.967 17 O -0.309 6.309 18 C 0.075 3.925 19 C 0.092 3.908 20 H 0.069 0.931 21 C -0.148 4.148 22 C -0.121 4.121 23 C -0.158 4.158 24 C 0.059 3.941 25 O -0.367 6.367 26 H 0.265 0.735 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.397 0.603 30 H 0.130 0.870 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.460 -16.575 -0.218 21.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.080 0.920 9 C 0.131 3.869 10 N -0.347 5.347 11 C 0.109 3.891 12 C -0.204 4.204 13 C -0.119 4.119 14 C -0.193 4.193 15 C -0.182 4.182 16 C -0.016 4.016 17 O -0.224 6.224 18 C -0.001 4.001 19 C 0.034 3.966 20 H 0.087 0.913 21 C -0.185 4.185 22 C -0.158 4.158 23 C -0.195 4.195 24 C -0.018 4.018 25 O -0.285 6.285 26 H 0.074 0.926 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.231 0.769 30 H 0.148 0.852 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.133 0.867 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.120 -16.018 -0.066 20.706 hybrid contribution 0.955 0.674 -0.197 1.186 sum 14.075 -15.344 -0.263 20.824 Atomic orbital electron populations 1.69950 1.06049 1.27219 1.49653 1.24918 0.94922 0.99371 0.94771 0.86420 0.79727 0.82642 0.78198 1.20496 1.21011 1.19748 1.21217 0.93423 0.90420 1.52274 0.91984 1.19097 0.88686 0.82704 0.96453 1.45413 1.09889 1.01775 1.77641 1.17483 0.91418 0.84564 0.95667 1.20594 0.92978 0.97446 1.09417 1.20731 0.98850 0.92110 1.00180 1.20434 0.92350 0.98230 1.08319 1.20789 0.96618 0.94111 1.06719 1.18414 0.82056 0.92782 1.08298 1.86025 1.13530 1.32673 1.90157 1.22608 0.87566 0.88467 1.01488 1.22076 0.92522 0.93505 0.88469 0.91348 1.22123 0.95239 0.98024 1.03151 1.21563 0.95992 1.00364 0.97912 1.22221 0.99996 0.98851 0.98467 1.22584 0.82082 0.94692 1.02445 1.88057 1.29324 1.73679 1.37484 0.92551 0.96250 0.96215 0.76904 0.85179 0.86802 0.87194 0.86697 0.91758 0.91201 0.90723 0.90540 0.91313 0.91615 0.91048 0.90903 0.88735 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -15.05 9.28 -34.44 -0.32 -15.37 16 8 H 0.06 1.70 7.60 -52.49 -0.40 1.30 16 9 C 0.25 6.67 4.67 -5.19 -0.02 6.65 16 10 N -0.72 -16.81 5.72 -59.66 -0.34 -17.16 16 11 C 0.22 4.59 6.67 -83.56 -0.56 4.03 16 12 C -0.18 -3.57 9.31 -39.41 -0.37 -3.94 16 13 C -0.10 -1.66 10.04 -39.58 -0.40 -2.06 16 14 C -0.17 -2.65 10.04 -39.56 -0.40 -3.05 16 15 C -0.16 -2.59 9.04 -39.47 -0.36 -2.94 16 16 C 0.03 0.61 6.70 -39.08 -0.26 0.35 16 17 O -0.31 -5.49 9.35 -24.54 -0.23 -5.72 16 18 C 0.07 0.97 4.41 37.16 0.16 1.14 16 19 C 0.09 1.09 2.93 -26.68 -0.08 1.02 16 20 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 21 C -0.15 -1.26 5.42 -26.59 -0.14 -1.41 16 22 C -0.12 -0.92 6.03 -26.55 -0.16 -1.08 16 23 C -0.16 -1.28 6.14 -26.59 -0.16 -1.44 16 24 C 0.06 0.62 6.84 37.21 0.25 0.87 16 25 O -0.37 -5.12 10.37 -40.00 -0.41 -5.53 16 26 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.02 0.55 7.95 -51.93 -0.41 0.14 16 28 H 0.02 0.56 7.96 -51.93 -0.41 0.15 16 29 H 0.40 9.12 7.68 -40.82 -0.31 8.81 16 30 H 0.13 2.69 6.74 -52.49 -0.35 2.34 16 31 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 32 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.12 1.49 6.30 -52.48 -0.33 1.16 16 34 H 0.06 0.81 7.66 -51.93 -0.40 0.41 16 35 H 0.07 0.77 7.66 -51.93 -0.40 0.37 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 349.80 15.07 5.27 5.27 Total: -1.00 -30.88 349.80 -9.71 -40.59 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -6.80 Total: 7.06 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -2.91 Total: -15.55 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.39 Total: -42.50 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -0.64 Total: -11.25 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.88 -9.71 -40.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591773392.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.884 kcal (2) G-P(sol) polarization free energy of solvation -30.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds