Wall clock time and date at job start Tue Mar 31 2020 08:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00162 * 2 1 4 4 H 1.48496 * 109.46977 * 269.99672 * 3 2 1 5 5 H 1.48498 * 109.46992 * 29.99901 * 3 2 1 6 6 H 1.48497 * 109.46893 * 149.99533 * 3 2 1 7 7 C 1.37875 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00479 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99858 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47139 * 179.97438 * 9 7 2 11 11 C 1.39961 * 120.00019 * 180.02562 * 10 9 7 12 12 C 1.38728 * 120.08962 * 359.97438 * 11 10 9 13 13 C 1.38225 * 119.97746 * 179.97438 * 12 11 10 14 14 C 1.38252 * 120.16430 * 0.02562 * 13 12 11 15 15 C 1.38284 * 120.17724 * 359.97438 * 14 13 12 16 16 C 1.38505 * 120.02033 * 359.97438 * 15 14 13 17 17 O 1.36012 * 120.07935 * 180.02562 * 16 15 14 18 18 C 1.42899 * 116.99964 * 0.02562 * 17 16 15 19 19 C 1.53005 * 109.47003 * 179.97438 * 18 17 16 20 20 H 1.09004 * 109.48274 * 305.02710 * 19 18 17 21 21 C 1.53089 * 109.48052 * 184.99979 * 19 18 17 22 22 C 1.53180 * 109.16232 * 182.40855 * 21 19 18 23 23 C 1.53177 * 109.03632 * 56.98544 * 22 21 19 24 24 C 1.53100 * 109.16029 * 303.01626 * 23 22 21 25 25 O 1.42897 * 109.41341 * 57.61166 * 24 23 22 26 26 H 0.97000 * 119.99491 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47179 * 59.99565 * 9 7 2 28 28 H 1.08998 * 109.46641 * 299.99606 * 9 7 2 29 29 H 0.97001 * 119.99899 * 359.97438 * 10 9 7 30 30 H 1.07996 * 120.00855 * 0.25518 * 12 11 10 31 31 H 1.08002 * 119.91215 * 180.02562 * 13 12 11 32 32 H 1.07996 * 119.90982 * 179.97438 * 14 13 12 33 33 H 1.08005 * 119.98826 * 180.02562 * 15 14 13 34 34 H 1.08998 * 109.47456 * 299.99337 * 18 17 16 35 35 H 1.08997 * 109.47243 * 60.00480 * 18 17 16 36 36 H 1.08999 * 109.52093 * 302.31329 * 21 19 18 37 37 H 1.09000 * 109.52526 * 62.44206 * 21 19 18 38 38 H 1.08999 * 109.54486 * 176.84504 * 22 21 19 39 39 H 1.08999 * 109.54419 * 297.02671 * 22 21 19 40 40 H 1.08991 * 109.52705 * 62.91982 * 23 22 21 41 41 H 1.09003 * 109.52476 * 183.11685 * 23 22 21 42 42 H 1.09002 * 109.48050 * 177.59378 * 24 23 22 43 43 H 1.08996 * 109.47997 * 297.61744 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7363 -4.9323 0.0000 12 6 0.3728 -5.1879 0.0000 13 6 -0.0855 -6.4919 -0.0011 14 6 0.8120 -7.5436 -0.0016 15 6 2.1725 -7.2964 -0.0016 16 6 2.6399 -5.9926 -0.0016 17 8 3.9779 -5.7481 -0.0022 18 6 4.8450 -6.8840 -0.0033 19 6 6.3011 -6.4141 -0.0044 20 1 6.4652 -5.7408 -0.8458 21 6 7.2284 -7.6255 -0.1313 22 6 8.6842 -7.1528 -0.0711 23 6 8.9066 -6.3850 1.2355 24 6 7.9144 -5.2214 1.3097 25 8 6.5812 -5.7274 1.2173 26 1 -0.4849 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5566 0.8903 29 1 3.1566 -3.4355 0.0002 30 1 -0.3304 -4.3682 -0.0038 31 1 -1.1472 -6.6897 -0.0015 32 1 0.4494 -8.5609 -0.0020 33 1 2.8709 -8.1203 -0.0025 34 1 4.6576 -7.4851 0.8865 35 1 4.6566 -7.4840 -0.8935 36 1 7.0363 -8.3186 0.6877 37 1 7.0460 -8.1258 -1.0824 38 1 9.3494 -8.0156 -0.1047 39 1 8.8909 -6.4998 -0.9191 40 1 8.7484 -7.0531 2.0820 41 1 9.9250 -5.9974 1.2615 42 1 8.0393 -4.6970 2.2571 43 1 8.0998 -4.5325 0.4857 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591773392.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:04 Heat of formation + Delta-G solvation = -91.340954 kcal Electronic energy + Delta-G solvation = -23006.531683 eV Core-core repulsion = 19629.414881 eV Total energy + Delta-G solvation = -3377.116802 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.17765 -40.24788 -38.32241 -36.58563 -34.60236 -34.57711 -33.23423 -30.90870 -30.67011 -28.32126 -27.84070 -25.33684 -24.86998 -23.54230 -22.83450 -21.84181 -21.20675 -19.43338 -18.52985 -17.72537 -17.50452 -17.10956 -16.88559 -16.37338 -16.08038 -15.79386 -15.45227 -15.38819 -14.97245 -14.87615 -14.79195 -14.43353 -13.93230 -13.63039 -13.61588 -13.42673 -13.07364 -12.88293 -12.76749 -12.36154 -12.34395 -12.20762 -12.09634 -11.78000 -11.74681 -11.57578 -11.44620 -11.25942 -11.09752 -10.54903 -10.42642 -9.36780 -8.31863 -7.92199 -6.45599 0.57025 0.80739 1.38185 1.40415 1.51835 2.25584 2.33849 2.75513 2.94427 3.01145 3.05182 3.72530 3.88459 3.90818 4.01539 4.03376 4.12075 4.16628 4.31179 4.32862 4.42295 4.48149 4.61811 4.64184 4.68919 4.77204 4.85362 4.90428 4.98228 5.04314 5.05418 5.10163 5.15373 5.29049 5.35304 5.36687 5.51054 5.55908 5.78071 5.86959 6.04051 6.26922 6.38121 6.57262 6.83569 7.16289 7.28051 8.80159 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011367 B = 0.004393 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.708270 B = 6372.560492 C = 8656.092328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.011 3.989 3 Si 0.978 3.022 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.559 4.559 8 H 0.063 0.937 9 C 0.277 3.723 10 N -0.736 5.736 11 C 0.174 3.826 12 C -0.198 4.198 13 C -0.104 4.104 14 C -0.151 4.151 15 C -0.159 4.159 16 C 0.031 3.969 17 O -0.335 6.335 18 C 0.066 3.934 19 C 0.088 3.912 20 H 0.057 0.943 21 C -0.140 4.140 22 C -0.121 4.121 23 C -0.152 4.152 24 C 0.050 3.950 25 O -0.401 6.401 26 H 0.270 0.730 27 H -0.009 1.009 28 H -0.011 1.011 29 H 0.394 0.606 30 H 0.104 0.896 31 H 0.142 0.858 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.123 -18.964 -0.512 24.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.802 3.198 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.597 4.597 8 H 0.082 0.918 9 C 0.154 3.846 10 N -0.363 5.363 11 C 0.068 3.932 12 C -0.222 4.222 13 C -0.123 4.123 14 C -0.171 4.171 15 C -0.178 4.178 16 C -0.017 4.017 17 O -0.250 6.250 18 C -0.009 4.009 19 C 0.031 3.969 20 H 0.075 0.925 21 C -0.178 4.178 22 C -0.159 4.159 23 C -0.189 4.189 24 C -0.027 4.027 25 O -0.321 6.321 26 H 0.079 0.921 27 H 0.009 0.991 28 H 0.007 0.993 29 H 0.227 0.773 30 H 0.122 0.878 31 H 0.159 0.841 32 H 0.172 0.828 33 H 0.171 0.829 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.786 -18.476 -0.364 23.667 hybrid contribution 0.415 1.239 -0.093 1.310 sum 15.202 -17.238 -0.457 22.988 Atomic orbital electron populations 1.70076 1.07740 1.28517 1.50020 1.25910 0.95866 1.03300 0.93822 0.85256 0.78388 0.77518 0.78680 1.19428 1.20114 1.19012 1.21552 0.93698 0.91512 1.52918 0.91848 1.18522 0.88574 0.83915 0.93621 1.45029 1.08796 1.02143 1.80342 1.17844 0.92650 0.84223 0.98438 1.20644 0.92396 0.98554 1.10569 1.21060 1.00811 0.90884 0.99537 1.20980 0.91819 0.99761 1.04572 1.21248 0.97774 0.93768 1.05007 1.18565 0.82429 0.93118 1.07559 1.86016 1.13460 1.35427 1.90067 1.22987 0.87354 0.87613 1.02911 1.22218 0.92611 0.94695 0.87399 0.92496 1.22099 0.94883 0.96435 1.04341 1.21607 0.95722 1.01066 0.97467 1.22177 0.99987 0.97853 0.98914 1.22765 0.81617 0.95863 1.02409 1.87999 1.31233 1.74374 1.38526 0.92109 0.99107 0.99277 0.77254 0.87776 0.84055 0.82839 0.82931 0.91099 0.88600 0.90300 0.88602 0.89255 0.91549 0.91093 0.89175 0.88687 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.07 13.29 21.45 0.28 -55.79 16 2 C 0.01 0.63 5.46 84.65 0.46 1.09 16 3 Si 0.98 44.60 29.54 68.60 2.03 46.62 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.56 -32.94 9.28 25.60 0.24 -32.70 16 8 H 0.06 3.62 7.60 -2.91 -0.02 3.60 16 9 C 0.28 15.81 4.67 85.64 0.40 16.21 16 10 N -0.74 -36.71 5.72 -342.68 -1.96 -38.67 16 11 C 0.17 7.66 6.67 38.22 0.25 7.91 16 12 C -0.20 -8.19 9.31 22.38 0.21 -7.98 16 13 C -0.10 -3.33 10.04 22.27 0.22 -3.10 16 14 C -0.15 -4.09 10.04 22.28 0.22 -3.87 16 15 C -0.16 -4.57 9.04 22.34 0.20 -4.37 16 16 C 0.03 1.17 6.70 22.59 0.15 1.32 16 17 O -0.33 -11.93 9.35 -89.13 -0.83 -12.76 16 18 C 0.07 1.62 4.41 71.98 0.32 1.94 16 19 C 0.09 2.02 2.93 30.63 0.09 2.11 16 20 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 21 C -0.14 -2.04 5.42 30.68 0.17 -1.87 16 22 C -0.12 -1.54 6.03 30.71 0.19 -1.35 16 23 C -0.15 -2.19 6.14 30.69 0.19 -2.01 16 24 C 0.05 1.04 6.84 72.02 0.49 1.53 16 25 O -0.40 -11.24 10.37 -144.42 -1.50 -12.74 16 26 H 0.27 15.21 8.31 -92.71 -0.77 14.43 16 27 H -0.01 -0.54 7.95 -2.38 -0.02 -0.56 16 28 H -0.01 -0.65 7.96 -2.39 -0.02 -0.67 16 29 H 0.39 19.43 7.68 -92.71 -0.71 18.71 16 30 H 0.10 4.73 6.74 -2.91 -0.02 4.71 16 31 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 32 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 33 H 0.15 3.21 6.30 -2.91 -0.02 3.19 16 34 H 0.07 1.63 7.66 -2.39 -0.02 1.61 16 35 H 0.10 1.81 7.66 -2.39 -0.02 1.79 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -70.85 349.80 2.10 -68.75 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: 0.28 Total: 29.72 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 3.80 Total: -25.14 kcal Atomic # 7 Polarization: -92.78 SS G_CDS: -1.68 Total: -94.45 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -2.33 Total: -25.50 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -70.85 2.10 -68.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591773392.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.589 kcal (2) G-P(sol) polarization free energy of solvation -70.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds