Wall clock time and date at job start Tue Mar 31 2020 08:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 O 1.42899 * 110.27406 * 59.29762 * 9 7 2 11 11 C 1.54601 * 110.30664 * 297.21135 * 9 7 2 12 12 C 1.55103 * 102.84538 * 219.18372 * 11 9 7 13 13 N 1.48535 * 103.28125 * 37.30582 * 12 11 9 14 14 C 1.46899 * 111.00098 * 200.33413 * 13 12 11 15 15 C 1.53004 * 109.46867 * 287.39520 * 14 13 12 16 16 C 1.53004 * 109.47240 * 179.97438 * 15 14 13 17 17 O 1.42889 * 109.47263 * 180.02562 * 16 15 14 18 18 C 1.35906 * 117.00134 * 180.02562 * 17 16 15 19 19 C 1.38737 * 120.05329 * 359.72470 * 18 17 16 20 20 C 1.38148 * 119.93871 * 179.74585 * 19 18 17 21 21 C 1.38263 * 120.05783 * 0.51009 * 20 19 18 22 22 C 1.38261 * 120.11146 * 359.76619 * 21 20 19 23 23 C 1.38144 * 120.05913 * 359.97438 * 22 21 20 24 24 C 1.47908 * 105.82202 * 320.84797 * 13 12 11 25 25 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 26 26 H 0.96699 * 114.00025 * 300.70280 * 10 9 7 27 27 H 1.09003 * 110.72458 * 337.48004 * 11 9 7 28 28 H 1.09005 * 110.72391 * 100.76907 * 11 9 7 29 29 H 1.08996 * 110.59657 * 278.87550 * 12 11 9 30 30 H 1.08994 * 110.83258 * 155.84556 * 12 11 9 31 31 H 1.08997 * 109.47414 * 47.39601 * 14 13 12 32 32 H 1.08999 * 109.47616 * 167.39850 * 14 13 12 33 33 H 1.08997 * 109.47384 * 299.99722 * 15 14 13 34 34 H 1.09001 * 109.47057 * 60.00496 * 15 14 13 35 35 H 1.09003 * 109.46946 * 300.00762 * 16 15 14 36 36 H 1.09005 * 109.46404 * 59.99941 * 16 15 14 37 37 H 1.07999 * 120.02656 * 359.97438 * 19 18 17 38 38 H 1.08004 * 119.96317 * 180.27513 * 20 19 18 39 39 H 1.07998 * 119.94272 * 179.74506 * 21 20 19 40 40 H 1.08004 * 119.97262 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.03005 * 180.02562 * 23 22 21 42 42 H 1.09001 * 109.91016 * 265.97584 * 24 13 12 43 43 H 1.08993 * 109.91789 * 144.68733 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 8 0.4059 -2.5830 -1.1551 11 6 0.4140 -2.6355 1.2868 12 6 0.5749 -4.1360 1.6452 13 7 1.9845 -4.4254 1.2775 14 6 2.1938 -5.8670 1.0879 15 6 2.1728 -6.5684 2.4475 16 6 2.3902 -8.0700 2.2501 17 8 2.3700 -8.7252 3.5198 18 6 2.5503 -10.0723 3.5220 19 6 2.7370 -10.7502 2.3260 20 6 2.9253 -12.1188 2.3314 21 6 2.9173 -12.8142 3.5264 22 6 2.7257 -12.1416 4.7191 23 6 2.5423 -10.7724 4.7197 24 6 2.2342 -3.6840 0.0222 25 1 -0.4849 0.8401 0.0041 26 1 -0.2488 -1.8738 -1.2144 27 1 0.8200 -2.0047 2.0776 28 1 -0.6316 -2.3927 1.0967 29 1 -0.1095 -4.7464 1.0561 30 1 0.4140 -4.2994 2.7108 31 1 1.4000 -6.2698 0.4590 32 1 3.1580 -6.0342 0.6077 33 1 2.9667 -6.1657 3.0765 34 1 1.2087 -6.4013 2.9277 35 1 1.5960 -8.4725 1.6212 36 1 3.3542 -8.2375 1.7697 37 1 2.7388 -10.2080 1.3920 38 1 3.0751 -12.6463 1.4010 39 1 3.0606 -13.8847 3.5281 40 1 2.7194 -12.6872 5.6512 41 1 2.3931 -10.2475 5.6516 42 1 2.0568 -4.3342 -0.8345 43 1 3.2600 -3.3159 0.0061 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592146586.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:07 Heat of formation + Delta-G solvation = -63.978651 kcal Electronic energy + Delta-G solvation = -22501.596286 eV Core-core repulsion = 19125.666003 eV Total energy + Delta-G solvation = -3375.930283 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.27214 -38.51421 -37.62076 -35.25311 -32.77818 -32.08155 -31.22556 -30.09918 -28.91646 -28.02060 -25.57448 -24.02523 -22.91580 -22.21409 -21.33180 -20.12917 -19.36557 -18.39209 -17.08152 -16.37958 -16.36345 -15.95861 -15.16026 -14.92614 -14.72547 -14.48719 -14.19417 -13.93355 -13.68684 -13.44176 -13.09205 -12.69970 -12.27218 -12.15530 -11.93993 -11.82867 -11.60386 -11.40464 -11.24009 -11.01942 -10.94001 -10.82967 -10.65306 -10.47158 -10.37694 -10.28127 -9.92532 -9.25869 -9.15439 -8.57555 -8.41433 -8.10923 -7.82552 -6.18832 -4.24804 1.08603 1.21665 2.99387 3.24849 3.31828 3.35894 3.55379 4.33099 4.48636 4.58431 4.66734 4.83801 4.87564 4.99064 5.08984 5.13542 5.17526 5.24495 5.32855 5.42852 5.53900 5.70979 5.74279 5.77255 5.97617 6.06712 6.08007 6.16291 6.19089 6.24509 6.26744 6.27699 6.44397 6.49755 6.55448 6.92926 7.05604 7.25771 7.28649 7.52611 7.64887 7.70153 7.85150 8.17324 8.76801 9.41564 9.51605 10.88906 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.045463 B = 0.002373 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.739466 B =11794.893686 C =11891.787556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.062 0.938 9 C 0.242 3.758 10 O -0.595 6.595 11 C -0.117 4.117 12 C 0.030 3.970 13 N -0.513 5.513 14 C 0.051 3.949 15 C -0.112 4.112 16 C 0.062 3.938 17 O -0.313 6.313 18 C 0.135 3.865 19 C -0.211 4.211 20 C -0.081 4.081 21 C -0.165 4.165 22 C -0.082 4.082 23 C -0.156 4.156 24 C 0.055 3.945 25 H 0.266 0.734 26 H 0.383 0.617 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.033 0.967 30 H 0.065 0.935 31 H 0.033 0.967 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.035 0.965 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.400 -20.670 6.140 21.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.080 0.920 9 C 0.202 3.798 10 O -0.405 6.405 11 C -0.156 4.156 12 C -0.098 4.098 13 N -0.238 5.238 14 C -0.078 4.078 15 C -0.149 4.149 16 C -0.014 4.014 17 O -0.226 6.226 18 C 0.089 3.911 19 C -0.230 4.230 20 C -0.099 4.099 21 C -0.183 4.183 22 C -0.100 4.100 23 C -0.175 4.175 24 C -0.072 4.072 25 H 0.076 0.924 26 H 0.234 0.766 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.054 0.946 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.945 -20.766 6.579 22.138 hybrid contribution -0.449 1.057 -0.759 1.377 sum 3.496 -19.709 5.820 20.846 Atomic orbital electron populations 1.69656 1.05944 1.27373 1.51027 1.25022 0.95013 0.99480 0.93921 0.86457 0.79888 0.82703 0.78152 1.20580 1.21153 1.19752 1.21690 0.93516 0.90584 1.50763 0.91986 1.19365 0.86458 0.91554 0.82418 1.86086 1.51898 1.54927 1.47598 1.23003 1.00753 0.91477 1.00353 1.23375 0.88098 0.99053 0.99248 1.64727 1.22822 1.05269 1.30960 1.22082 1.00872 0.89891 0.94930 1.21467 1.04107 0.90418 0.98953 1.22855 1.01284 0.93662 0.83585 1.86082 1.86619 1.17041 1.32906 1.19100 0.94926 0.82938 0.94144 1.21337 1.08381 0.95851 0.97395 1.20966 0.97188 0.93458 0.98265 1.21048 1.04658 1.00017 0.92576 1.20967 0.97451 0.93263 0.98334 1.20489 1.06428 0.94036 0.96498 1.22848 1.00581 0.95107 0.88706 0.92385 0.76627 0.91348 0.91662 0.94888 0.91636 0.94865 0.91116 0.89954 0.90844 0.92105 0.91901 0.85370 0.85880 0.86058 0.85480 0.85197 0.94621 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.11 10.88 55.43 0.60 -23.51 16 2 C 0.07 1.79 5.26 -17.82 -0.09 1.69 16 3 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.53 -14.22 8.11 -34.44 -0.28 -14.50 16 8 H 0.06 1.67 7.34 -52.49 -0.39 1.28 16 9 C 0.24 6.04 0.99 -90.42 -0.09 5.95 16 10 O -0.60 -15.57 12.92 -35.23 -0.46 -16.03 16 11 C -0.12 -2.73 5.42 -24.78 -0.13 -2.86 16 12 C 0.03 0.58 5.92 -1.81 -0.01 0.57 16 13 N -0.51 -9.82 5.25 -230.35 -1.21 -11.03 16 14 C 0.05 0.77 4.71 -3.82 -0.02 0.75 16 15 C -0.11 -1.46 5.67 -26.73 -0.15 -1.62 16 16 C 0.06 0.70 4.74 37.16 0.18 0.87 16 17 O -0.31 -3.99 10.14 -19.45 -0.20 -4.19 16 18 C 0.13 1.57 6.69 -39.21 -0.26 1.30 16 19 C -0.21 -2.16 9.04 -39.43 -0.36 -2.52 16 20 C -0.08 -0.71 10.04 -39.61 -0.40 -1.11 16 21 C -0.16 -1.36 10.04 -39.56 -0.40 -1.76 16 22 C -0.08 -0.70 10.04 -39.61 -0.40 -1.10 16 23 C -0.16 -1.60 9.99 -39.43 -0.39 -2.00 16 24 C 0.05 1.20 6.13 -2.76 -0.02 1.18 16 25 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 26 H 0.38 10.15 7.18 45.56 0.33 10.47 16 27 H 0.07 1.69 7.86 -51.93 -0.41 1.28 16 28 H 0.06 1.57 8.02 -51.93 -0.42 1.16 16 29 H 0.03 0.63 7.81 -51.93 -0.41 0.23 16 30 H 0.07 1.16 7.80 -51.93 -0.40 0.76 16 31 H 0.03 0.50 7.83 -51.93 -0.41 0.09 16 32 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 1.01 7.37 -51.93 -0.38 0.62 16 35 H 0.06 0.63 7.65 -51.93 -0.40 0.24 16 36 H 0.06 0.64 7.67 -51.93 -0.40 0.24 16 37 H 0.13 1.16 6.30 -52.49 -0.33 0.83 16 38 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 39 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 40 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 41 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.04 0.76 7.59 -51.93 -0.39 0.37 16 43 H 0.08 1.74 7.39 -51.93 -0.38 1.35 16 LS Contribution 347.39 15.07 5.24 5.24 Total: -1.00 -28.52 347.39 -9.92 -38.44 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -6.06 Total: 10.40 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -2.82 Total: -15.12 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: -0.61 Total: -34.54 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.65 Total: -20.22 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.52 -9.92 -38.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146586.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.539 kcal (2) G-P(sol) polarization free energy of solvation -28.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds