Wall clock time and date at job start Tue Mar 31 2020 08:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99716 * 2 1 4 4 H 1.48501 * 109.47377 * 240.00249 * 3 2 1 5 5 H 1.48506 * 109.47136 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46993 * 120.00106 * 3 2 1 7 7 C 1.37877 * 120.00312 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00045 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99887 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47179 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47279 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47153 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47055 * 179.97438 * 12 11 10 14 14 O 1.21284 * 120.00099 * 0.02562 * 13 12 11 15 15 N 1.34769 * 119.99987 * 179.97438 * 13 12 11 16 16 C 1.46507 * 120.00397 * 180.02562 * 15 13 12 17 17 C 1.50692 * 109.47540 * 180.02562 * 16 15 13 18 18 C 1.38229 * 120.00279 * 89.99805 * 17 16 15 19 19 C 1.38234 * 120.00615 * 180.02562 * 18 17 16 20 20 C 1.38239 * 119.99681 * 0.02562 * 19 18 17 21 21 C 1.50699 * 120.00049 * 179.97438 * 20 19 18 22 22 O 1.42905 * 109.46972 * 90.00114 * 21 20 19 23 23 C 1.38236 * 119.99618 * 0.24824 * 20 19 18 24 24 C 1.38231 * 120.00348 * 359.49741 * 23 20 19 25 25 H 0.97005 * 120.00481 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47196 * 60.00156 * 9 7 2 27 27 H 1.09001 * 109.46828 * 299.99887 * 9 7 2 28 28 H 1.09000 * 109.47131 * 59.99869 * 10 9 7 29 29 H 1.09001 * 109.46947 * 299.99567 * 10 9 7 30 30 H 1.09000 * 109.47060 * 59.99930 * 11 10 9 31 31 H 1.09001 * 109.46863 * 299.99723 * 11 10 9 32 32 H 1.09000 * 109.46867 * 60.00213 * 12 11 10 33 33 H 1.08993 * 109.47492 * 300.00116 * 12 11 10 34 34 H 0.96996 * 120.00357 * 0.02562 * 15 13 12 35 35 H 1.09005 * 109.46680 * 59.99896 * 16 15 13 36 36 H 1.08993 * 109.47006 * 300.00648 * 16 15 13 37 37 H 1.08006 * 120.00063 * 0.02562 * 18 17 16 38 38 H 1.07993 * 120.00649 * 179.97438 * 19 18 17 39 39 H 1.09000 * 109.47247 * 330.00049 * 21 20 19 40 40 H 1.09001 * 109.47358 * 209.99475 * 21 20 19 41 41 H 0.96696 * 114.00036 * 179.97438 * 22 21 20 42 42 H 1.08004 * 119.99728 * 179.72715 * 23 20 19 43 43 H 1.08001 * 119.99970 * 180.22692 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9870 0.0001 12 6 2.4748 -6.1499 -0.0005 13 6 1.7213 -7.4550 0.0007 14 8 0.5085 -7.4551 0.0016 15 7 2.3952 -8.6222 -0.0001 16 6 1.6628 -9.8910 0.0006 17 6 2.6421 -11.0364 0.0001 18 6 3.0921 -11.5615 1.1969 19 6 3.9908 -12.6118 1.1965 20 6 4.4400 -13.1367 -0.0009 21 6 5.4202 -14.2813 -0.0014 22 8 4.7066 -15.5195 -0.0014 23 6 3.9943 -12.6078 -1.1978 24 6 3.0915 -11.5609 -1.1974 25 1 -0.4851 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5570 0.8897 28 1 2.8720 -3.6042 0.8894 29 1 2.8719 -3.6042 -0.8906 30 1 0.8535 -5.0450 -0.8896 31 1 0.8541 -5.0445 0.8904 32 1 3.1020 -6.0921 0.8890 33 1 3.1008 -6.0923 -0.8909 34 1 3.3652 -8.6222 -0.0011 35 1 1.0352 -9.9487 -0.8888 36 1 1.0371 -9.9488 0.8911 37 1 2.7416 -11.1512 2.1325 38 1 4.3428 -13.0219 2.1315 39 1 6.0472 -14.2232 0.8883 40 1 6.0465 -14.2230 -0.8917 41 1 5.2756 -16.3013 -0.0021 42 1 4.3486 -13.0149 -2.1333 43 1 2.7406 -11.1502 -2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592825534.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:08 Heat of formation + Delta-G solvation = -117.866020 kcal Electronic energy + Delta-G solvation = -21243.807660 eV Core-core repulsion = 17865.540645 eV Total energy + Delta-G solvation = -3378.267015 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.02364 -40.25217 -37.71869 -36.68612 -35.89140 -34.59919 -32.96651 -31.92912 -31.44615 -28.82142 -27.23966 -25.24962 -23.85397 -23.73086 -21.81643 -21.77784 -21.25962 -18.41521 -18.36503 -18.19272 -17.30295 -17.09623 -16.73050 -16.63203 -16.47160 -15.90435 -15.61265 -14.83388 -14.82632 -14.52898 -14.39711 -14.34737 -13.97939 -13.76314 -13.57354 -13.38361 -13.24066 -12.85346 -12.77405 -12.36762 -12.14686 -12.11289 -12.01783 -11.95935 -11.36284 -11.35159 -11.18096 -10.97830 -10.84757 -10.53459 -10.14669 -9.89307 -9.76070 -8.17523 -6.29946 0.12840 0.43098 1.40875 1.45023 1.52884 1.65407 2.20041 2.42904 2.77979 3.14921 3.52510 3.68836 3.80483 3.88469 4.05320 4.08393 4.13543 4.16817 4.17950 4.46368 4.52506 4.57066 4.59928 4.70236 4.74188 4.75779 4.86093 4.89873 4.97641 5.10308 5.20825 5.33939 5.34363 5.36903 5.43238 5.57368 5.58257 5.59935 5.79342 5.89019 5.97779 6.26286 6.54774 6.88287 6.89893 7.26401 7.39583 8.94373 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.044761 B = 0.001839 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.390388 B =15223.402663 C =15517.800364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.007 4.007 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.018 3.982 10 C -0.096 4.096 11 C -0.096 4.096 12 C -0.127 4.127 13 C 0.512 3.488 14 O -0.588 6.588 15 N -0.714 5.714 16 C 0.162 3.838 17 C -0.105 4.105 18 C -0.109 4.109 19 C -0.108 4.108 20 C -0.100 4.100 21 C 0.114 3.886 22 O -0.592 6.592 23 C -0.108 4.108 24 C -0.109 4.109 25 H 0.263 0.737 26 H -0.015 1.015 27 H -0.015 1.015 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.416 0.584 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.134 0.866 38 H 0.139 0.861 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.400 0.600 42 H 0.139 0.861 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.917 -32.347 -0.010 36.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.085 0.915 9 C -0.019 4.019 10 C -0.133 4.133 11 C -0.135 4.135 12 C -0.167 4.167 13 C 0.300 3.700 14 O -0.468 6.468 15 N -0.367 5.367 16 C 0.039 3.961 17 C -0.105 4.105 18 C -0.127 4.127 19 C -0.126 4.126 20 C -0.100 4.100 21 C 0.037 3.963 22 O -0.401 6.401 23 C -0.126 4.126 24 C -0.127 4.127 25 H 0.071 0.929 26 H 0.003 0.997 27 H 0.003 0.997 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.253 0.747 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.152 0.848 38 H 0.157 0.843 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.251 0.749 42 H 0.157 0.843 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 14.408 -31.858 -0.009 34.964 hybrid contribution 0.471 0.642 0.001 0.796 sum 14.878 -31.215 -0.008 34.580 Atomic orbital electron populations 1.70127 1.08062 1.27787 1.51765 1.26095 0.95788 1.03733 0.94758 0.85431 0.78160 0.77685 0.79321 1.18921 1.21067 1.18932 1.21737 0.93768 0.92253 1.50426 0.91549 1.19064 0.94726 0.93823 0.94331 1.21450 0.97817 0.92738 1.01331 1.21252 0.97518 0.93653 1.01044 1.21669 0.98917 0.89365 1.06732 1.21217 0.87753 0.86610 0.74414 1.90704 1.16463 1.88347 1.51302 1.45969 1.11060 1.04381 1.75275 1.20114 0.92836 0.80686 1.02505 1.19823 0.98942 0.97600 0.94161 1.21258 0.97064 0.96472 0.97924 1.21283 0.96907 0.96051 0.98390 1.20045 0.99186 0.97205 0.93604 1.21079 0.91409 0.81682 1.02107 1.86511 1.39312 1.16490 1.97820 1.21284 0.96884 0.96074 0.98390 1.21260 0.97025 0.96512 0.97918 0.92879 0.99699 0.99709 0.92054 0.92046 0.93868 0.93863 0.86327 0.86314 0.74713 0.91446 0.91457 0.84831 0.84341 0.91123 0.91120 0.74947 0.84332 0.84826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.36 13.29 21.45 0.28 -59.07 16 2 C -0.01 -0.39 5.46 84.66 0.46 0.08 16 3 Si 0.97 45.01 29.54 68.60 2.03 47.03 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.54 -31.81 9.11 25.60 0.23 -31.57 16 8 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 9 C 0.02 0.98 4.97 29.85 0.15 1.13 16 10 C -0.10 -3.95 5.15 30.59 0.16 -3.79 16 11 C -0.10 -3.53 4.50 30.60 0.14 -3.39 16 12 C -0.13 -3.15 5.70 29.85 0.17 -2.98 16 13 C 0.51 13.95 7.83 87.66 0.69 14.64 16 14 O -0.59 -22.19 15.98 -3.04 -0.05 -22.23 16 15 N -0.71 -13.60 5.55 -466.80 -2.59 -16.19 16 16 C 0.16 3.09 5.80 85.63 0.50 3.58 16 17 C -0.10 -1.64 5.25 -19.87 -0.10 -1.74 16 18 C -0.11 -1.57 9.70 22.27 0.22 -1.35 16 19 C -0.11 -1.44 9.70 22.27 0.22 -1.22 16 20 C -0.10 -1.32 5.51 -19.86 -0.11 -1.43 16 21 C 0.11 0.97 7.17 71.24 0.51 1.48 16 22 O -0.59 -6.49 13.64 -148.98 -2.03 -8.52 16 23 C -0.11 -1.43 9.70 22.27 0.22 -1.22 16 24 C -0.11 -1.56 9.70 22.27 0.22 -1.35 16 25 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 26 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 27 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 28 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 31 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 32 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.42 5.44 8.46 -92.71 -0.78 4.66 16 35 H 0.07 1.41 8.09 -2.38 -0.02 1.39 16 36 H 0.07 1.41 8.08 -2.39 -0.02 1.39 16 37 H 0.13 1.67 8.06 -2.91 -0.02 1.64 16 38 H 0.14 1.35 8.06 -2.91 -0.02 1.32 16 39 H 0.07 0.37 8.09 -2.39 -0.02 0.35 16 40 H 0.07 0.37 8.08 -2.39 -0.02 0.35 16 41 H 0.40 0.44 9.12 -74.06 -0.68 -0.23 16 42 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 43 H 0.13 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -80.08 367.84 0.84 -79.24 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -0.46 Total: 8.87 kcal Atomic # 6 Polarization: -32.78 SS G_CDS: 3.65 Total: -29.13 kcal Atomic # 7 Polarization: -72.96 SS G_CDS: -2.30 Total: -75.26 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -2.08 Total: -30.75 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -80.08 0.84 -79.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592825534.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.624 kcal (2) G-P(sol) polarization free energy of solvation -80.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds