Wall clock time and date at job start Tue Mar 31 2020 08:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99955 * 2 1 4 4 H 1.48497 * 109.47211 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47247 * 59.99332 * 3 2 1 6 6 H 1.48500 * 109.46538 * 299.99788 * 3 2 1 7 7 C 1.37877 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99940 * 186.61050 * 7 2 1 9 9 C 1.50697 * 120.00086 * 6.60469 * 7 2 1 10 10 O 1.42894 * 110.89051 * 299.70115 * 9 7 2 11 11 C 1.55156 * 111.00740 * 175.77118 * 9 7 2 12 12 C 1.54318 * 102.94695 * 206.42728 * 11 9 7 13 13 N 1.47026 * 107.26817 * 22.19397 * 12 11 9 14 14 C 1.34776 * 125.64282 * 181.09166 * 13 12 11 15 15 O 1.21281 * 119.99543 * 179.97438 * 14 13 12 16 16 C 1.50693 * 120.00312 * 359.96343 * 14 13 12 17 17 H 1.09004 * 109.46327 * 60.03044 * 16 14 13 18 18 C 1.53032 * 109.46036 * 300.07425 * 16 14 13 19 19 C 1.53406 * 109.54951 * 239.97725 * 18 16 14 20 20 H 1.08997 * 110.76062 * 177.06962 * 19 18 16 21 21 C 1.52149 * 107.84618 * 55.70684 * 19 18 16 22 22 C 1.33099 * 113.75804 * 301.71914 * 21 19 18 23 23 C 1.52152 * 113.75657 * 0.02562 * 22 21 19 24 24 H 1.09002 * 110.77249 * 179.63824 * 23 22 21 25 25 C 1.53488 * 107.68176 * 301.58920 * 23 22 21 26 26 C 1.53027 * 109.53780 * 55.82316 * 25 23 22 27 27 C 1.47416 * 108.70313 * 1.05975 * 13 12 11 28 28 H 0.97003 * 119.99527 * 184.53845 * 1 2 3 29 29 H 0.96705 * 113.99665 * 301.64483 * 10 9 7 30 30 H 1.09003 * 110.72116 * 324.79531 * 11 9 7 31 31 H 1.09004 * 110.71728 * 88.06230 * 11 9 7 32 32 H 1.09000 * 109.88103 * 262.77919 * 12 11 9 33 33 H 1.08997 * 109.88112 * 141.61069 * 12 11 9 34 34 H 1.09002 * 109.45545 * 0.02562 * 18 16 14 35 35 H 1.08998 * 109.45703 * 119.94893 * 18 16 14 36 36 H 1.08003 * 123.12486 * 121.75935 * 21 19 18 37 37 H 1.08001 * 123.12148 * 180.02562 * 22 21 19 38 38 H 1.08999 * 109.46311 * 175.83853 * 25 23 22 39 39 H 1.09002 * 109.46396 * 295.80061 * 25 23 22 40 40 H 1.09004 * 109.45702 * 239.97759 * 26 25 23 41 41 H 1.08990 * 109.45027 * 120.01657 * 26 25 23 42 42 H 1.09001 * 110.36916 * 217.03304 * 27 13 12 43 43 H 1.09003 * 110.36996 * 94.71291 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 1.2124 6 1 1.8903 2.3963 -1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0792 -1.1970 0.1082 9 6 1.2586 -2.4949 -0.1490 10 8 0.3199 -2.6691 0.9142 11 6 2.2408 -3.6934 -0.2269 12 6 1.4421 -4.7435 -1.0274 13 7 0.4166 -4.0206 -1.7938 14 6 -0.5006 -4.5841 -2.6047 15 8 -1.3025 -3.8873 -3.1898 16 6 -0.5297 -6.0800 -2.7847 17 1 -0.7017 -6.5585 -1.8205 18 6 0.8097 -6.5510 -3.3554 19 6 0.5778 -7.2436 -4.7045 20 1 1.5252 -7.5416 -5.1537 21 6 -0.1645 -6.2694 -5.6072 22 6 -1.3296 -5.8598 -5.1108 23 6 -1.6600 -6.4562 -3.7506 24 1 -2.6182 -6.0842 -3.3878 25 6 -1.6753 -7.9834 -3.9025 26 6 -0.3358 -8.4544 -4.4731 27 6 0.5574 -2.5775 -1.5278 28 1 -0.4849 -0.8375 0.0665 29 1 0.7177 -2.6593 1.7956 30 1 3.1501 -3.4130 -0.7585 31 1 2.4752 -4.0654 0.7706 32 1 0.9668 -5.4475 -0.3443 33 1 2.1071 -5.2754 -1.7077 34 1 1.4666 -5.6925 -3.4957 35 1 1.2733 -7.2526 -2.6620 36 1 0.2180 -5.9413 -6.5624 37 1 -1.9800 -5.1682 -5.6257 38 1 -1.8366 -8.4438 -2.9277 39 1 -2.4799 -8.2732 -4.5783 40 1 -0.5047 -8.9677 -5.4198 41 1 0.1384 -9.1381 -3.7691 42 1 -0.4227 -2.1024 -1.4840 43 1 1.1731 -2.1085 -2.2953 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593747637.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:27 Heat of formation + Delta-G solvation = -75.830109 kcal Electronic energy + Delta-G solvation = -24652.637449 eV Core-core repulsion = 21276.193248 eV Total energy + Delta-G solvation = -3376.444201 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.00502 -38.88591 -37.14167 -34.53510 -32.32701 -31.47919 -31.03812 -30.78749 -29.82796 -27.70476 -25.05039 -23.48093 -22.26815 -22.05476 -21.27379 -19.98992 -18.84440 -17.56550 -16.91291 -16.84484 -16.18072 -15.66935 -15.11913 -14.94426 -14.45755 -14.07155 -13.79349 -13.40145 -13.11048 -12.85917 -12.49743 -12.36360 -12.23770 -12.20743 -12.12795 -12.09029 -11.80287 -11.64307 -11.40556 -10.99759 -10.81727 -10.64395 -10.51658 -10.20515 -10.17406 -10.15025 -9.89181 -9.33817 -9.20203 -8.85531 -8.60431 -8.14729 -7.95974 -6.38614 -4.29034 2.35412 3.15598 3.39625 3.42322 3.55799 3.56707 4.44996 4.47922 4.55919 4.62973 4.97583 5.05311 5.17316 5.18367 5.19834 5.24234 5.31558 5.34525 5.43912 5.46911 5.52582 5.62398 5.69211 5.76992 5.84411 5.89449 5.98003 6.06244 6.11245 6.13274 6.17835 6.18666 6.28470 6.56878 6.67705 6.71321 6.86334 6.89744 7.03281 7.22561 7.86664 8.16236 8.27340 8.71916 8.78730 8.97715 9.56148 10.97640 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030090 B = 0.004268 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.308182 B = 6559.488473 C = 6750.485641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.039 3.961 3 Si 1.068 2.932 4 H -0.289 1.289 5 H -0.287 1.287 6 H -0.285 1.285 7 C -0.641 4.641 8 H 0.057 0.943 9 C 0.232 3.768 10 O -0.572 6.572 11 C -0.151 4.151 12 C 0.104 3.896 13 N -0.611 5.611 14 C 0.527 3.473 15 O -0.544 6.544 16 C -0.096 4.096 17 H 0.093 0.907 18 C -0.105 4.105 19 C -0.058 4.058 20 H 0.080 0.920 21 C -0.187 4.187 22 C -0.121 4.121 23 C -0.044 4.044 24 H 0.087 0.913 25 C -0.111 4.111 26 C -0.111 4.111 27 C 0.127 3.873 28 H 0.291 0.709 29 H 0.361 0.639 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.173 -16.618 -5.964 17.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.172 4.172 3 Si 0.897 3.103 4 H -0.215 1.215 5 H -0.213 1.213 6 H -0.211 1.211 7 C -0.679 4.679 8 H 0.075 0.925 9 C 0.192 3.808 10 O -0.377 6.377 11 C -0.190 4.190 12 C -0.019 4.019 13 N -0.344 5.344 14 C 0.315 3.685 15 O -0.422 6.422 16 C -0.117 4.117 17 H 0.111 0.889 18 C -0.143 4.143 19 C -0.076 4.076 20 H 0.098 0.902 21 C -0.205 4.205 22 C -0.139 4.139 23 C -0.063 4.063 24 H 0.105 0.895 25 C -0.149 4.149 26 C -0.148 4.148 27 C 0.005 3.995 28 H 0.105 0.895 29 H 0.207 0.793 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.055 -14.706 -6.883 16.271 hybrid contribution 0.751 -1.508 0.578 1.781 sum 1.807 -16.214 -6.305 17.490 Atomic orbital electron populations 1.70586 1.06986 1.33253 1.41510 1.25807 0.96440 1.02460 0.92471 0.83576 0.74524 0.75065 0.77165 1.21470 1.21321 1.21089 1.22208 0.94877 0.91384 1.59455 0.92497 1.19933 0.84790 0.91825 0.84205 1.86376 1.38925 1.95716 1.16730 1.23250 0.99455 0.97032 0.99221 1.22048 0.90107 0.95540 0.94219 1.48678 1.31828 1.09517 1.44384 1.20124 0.80023 0.89794 0.78582 1.90659 1.39567 1.64227 1.47718 1.21409 0.96940 0.93187 1.00211 0.88873 1.21742 0.95735 1.00573 0.96266 1.20622 0.98047 0.94423 0.94519 0.90153 1.23689 0.96811 1.00432 0.99559 1.23707 0.97327 0.97486 0.95420 1.20485 0.98110 0.94378 0.93304 0.89496 1.21660 0.97611 0.94508 1.01119 1.21650 0.95570 0.96777 1.00850 1.22513 1.01747 0.78433 0.96774 0.89509 0.79311 0.90689 0.91335 0.92481 0.92314 0.91045 0.90987 0.86612 0.86327 0.91641 0.91582 0.91898 0.91763 0.90587 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.28 55.43 0.74 -25.66 16 2 C 0.04 1.06 5.28 -17.82 -0.09 0.96 16 3 Si 1.07 24.35 29.91 -169.99 -5.08 19.27 16 4 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.64 -16.85 8.22 -34.44 -0.28 -17.13 16 8 H 0.06 1.48 7.79 -52.48 -0.41 1.07 16 9 C 0.23 5.49 0.70 -89.62 -0.06 5.42 16 10 O -0.57 -13.75 11.53 -35.23 -0.41 -14.16 16 11 C -0.15 -2.85 6.13 -24.90 -0.15 -3.00 16 12 C 0.10 1.75 5.94 -3.06 -0.02 1.73 16 13 N -0.61 -12.43 3.23 -170.53 -0.55 -12.98 16 14 C 0.53 10.38 6.68 -10.99 -0.07 10.31 16 15 O -0.54 -12.66 15.22 5.56 0.08 -12.58 16 16 C -0.10 -1.40 2.05 -91.57 -0.19 -1.58 16 17 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 18 C -0.11 -1.30 3.80 -26.50 -0.10 -1.40 16 19 C -0.06 -0.63 3.58 -90.62 -0.32 -0.96 16 20 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 21 C -0.19 -2.39 9.81 -35.38 -0.35 -2.74 16 22 C -0.12 -1.73 8.26 -35.38 -0.29 -2.02 16 23 C -0.04 -0.60 2.69 -90.61 -0.24 -0.84 16 24 H 0.09 1.27 8.06 -51.93 -0.42 0.86 16 25 C -0.11 -1.15 5.67 -26.46 -0.15 -1.30 16 26 C -0.11 -1.05 5.67 -26.49 -0.15 -1.20 16 27 C 0.13 3.09 5.50 -2.53 -0.01 3.08 16 28 H 0.29 8.84 5.04 -40.82 -0.21 8.63 16 29 H 0.36 7.58 9.08 45.56 0.41 7.99 16 30 H 0.07 1.40 8.03 -51.93 -0.42 0.98 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.84 6.14 -51.93 -0.32 0.52 16 34 H 0.07 1.01 6.34 -51.93 -0.33 0.68 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 37 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.08 2.13 6.88 -51.93 -0.36 1.77 16 43 H 0.07 1.76 8.03 -51.93 -0.42 1.35 16 LS Contribution 329.25 15.07 4.96 4.96 Total: -1.00 -31.67 329.25 -8.66 -40.33 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -5.90 Total: 11.48 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -2.49 Total: -10.67 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.19 Total: -38.63 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.32 Total: -26.74 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -5.08 Total: 19.27 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.67 -8.66 -40.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593747637.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.498 kcal (2) G-P(sol) polarization free energy of solvation -31.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds