Wall clock time and date at job start Tue Mar 31 2020 08:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99955 * 2 1 4 4 H 1.48497 * 109.47211 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47247 * 59.99332 * 3 2 1 6 6 H 1.48500 * 109.46538 * 299.99788 * 3 2 1 7 7 C 1.37877 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99940 * 186.61050 * 7 2 1 9 9 C 1.50697 * 120.00086 * 6.60469 * 7 2 1 10 10 O 1.42894 * 110.89051 * 299.70115 * 9 7 2 11 11 C 1.55156 * 111.00740 * 175.77118 * 9 7 2 12 12 C 1.54318 * 102.94695 * 206.42728 * 11 9 7 13 13 N 1.47026 * 107.26817 * 22.19397 * 12 11 9 14 14 C 1.34776 * 125.64282 * 181.09166 * 13 12 11 15 15 O 1.21281 * 119.99543 * 179.97438 * 14 13 12 16 16 C 1.50693 * 120.00312 * 359.96343 * 14 13 12 17 17 H 1.09004 * 109.46327 * 60.03044 * 16 14 13 18 18 C 1.53032 * 109.46036 * 300.07425 * 16 14 13 19 19 C 1.53406 * 109.54951 * 239.97725 * 18 16 14 20 20 H 1.08997 * 110.76062 * 177.06962 * 19 18 16 21 21 C 1.52149 * 107.84618 * 55.70684 * 19 18 16 22 22 C 1.33099 * 113.75804 * 301.71914 * 21 19 18 23 23 C 1.52152 * 113.75657 * 0.02562 * 22 21 19 24 24 H 1.09002 * 110.77249 * 179.63824 * 23 22 21 25 25 C 1.53488 * 107.68176 * 301.58920 * 23 22 21 26 26 C 1.53027 * 109.53780 * 55.82316 * 25 23 22 27 27 C 1.47416 * 108.70313 * 1.05975 * 13 12 11 28 28 H 0.97003 * 119.99527 * 184.53845 * 1 2 3 29 29 H 0.96705 * 113.99665 * 301.64483 * 10 9 7 30 30 H 1.09003 * 110.72116 * 324.79531 * 11 9 7 31 31 H 1.09004 * 110.71728 * 88.06230 * 11 9 7 32 32 H 1.09000 * 109.88103 * 262.77919 * 12 11 9 33 33 H 1.08997 * 109.88112 * 141.61069 * 12 11 9 34 34 H 1.09002 * 109.45545 * 0.02562 * 18 16 14 35 35 H 1.08998 * 109.45703 * 119.94893 * 18 16 14 36 36 H 1.08003 * 123.12486 * 121.75935 * 21 19 18 37 37 H 1.08001 * 123.12148 * 180.02562 * 22 21 19 38 38 H 1.08999 * 109.46311 * 175.83853 * 25 23 22 39 39 H 1.09002 * 109.46396 * 295.80061 * 25 23 22 40 40 H 1.09004 * 109.45702 * 239.97759 * 26 25 23 41 41 H 1.08990 * 109.45027 * 120.01657 * 26 25 23 42 42 H 1.09001 * 110.36916 * 217.03304 * 27 13 12 43 43 H 1.09003 * 110.36996 * 94.71291 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 1.2124 6 1 1.8903 2.3963 -1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0792 -1.1970 0.1082 9 6 1.2586 -2.4949 -0.1490 10 8 0.3199 -2.6691 0.9142 11 6 2.2408 -3.6934 -0.2269 12 6 1.4421 -4.7435 -1.0274 13 7 0.4166 -4.0206 -1.7938 14 6 -0.5006 -4.5841 -2.6047 15 8 -1.3025 -3.8873 -3.1898 16 6 -0.5297 -6.0800 -2.7847 17 1 -0.7017 -6.5585 -1.8205 18 6 0.8097 -6.5510 -3.3554 19 6 0.5778 -7.2436 -4.7045 20 1 1.5252 -7.5416 -5.1537 21 6 -0.1645 -6.2694 -5.6072 22 6 -1.3296 -5.8598 -5.1108 23 6 -1.6600 -6.4562 -3.7506 24 1 -2.6182 -6.0842 -3.3878 25 6 -1.6753 -7.9834 -3.9025 26 6 -0.3358 -8.4544 -4.4731 27 6 0.5574 -2.5775 -1.5278 28 1 -0.4849 -0.8375 0.0665 29 1 0.7177 -2.6593 1.7956 30 1 3.1501 -3.4130 -0.7585 31 1 2.4752 -4.0654 0.7706 32 1 0.9668 -5.4475 -0.3443 33 1 2.1071 -5.2754 -1.7077 34 1 1.4666 -5.6925 -3.4957 35 1 1.2733 -7.2526 -2.6620 36 1 0.2180 -5.9413 -6.5624 37 1 -1.9800 -5.1682 -5.6257 38 1 -1.8366 -8.4438 -2.9277 39 1 -2.4799 -8.2732 -4.5783 40 1 -0.5047 -8.9677 -5.4198 41 1 0.1384 -9.1381 -3.7691 42 1 -0.4227 -2.1024 -1.4840 43 1 1.1731 -2.1085 -2.2953 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593747637.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:09 Heat of formation + Delta-G solvation = -97.201633 kcal Electronic energy + Delta-G solvation = -24653.564188 eV Core-core repulsion = 21276.193248 eV Total energy + Delta-G solvation = -3377.370940 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 13.87 seconds Orbital eigenvalues (eV) -42.17275 -40.37726 -38.80096 -36.30100 -34.38323 -32.76686 -31.97999 -31.67642 -31.34155 -29.42885 -26.93589 -24.90246 -23.37607 -23.18524 -22.25868 -21.78904 -20.35308 -19.51963 -18.39110 -17.86524 -17.21204 -17.18462 -16.81894 -16.26415 -15.69919 -15.61719 -15.54561 -14.83214 -14.53794 -14.38494 -14.03067 -13.79056 -13.65488 -13.50775 -13.17841 -13.14692 -13.09690 -12.96676 -12.70613 -12.55958 -12.33595 -12.26336 -12.03293 -11.90719 -11.55930 -11.19829 -11.09951 -10.81703 -10.75547 -10.57667 -10.09954 -9.88970 -9.60205 -8.55077 -6.46025 1.31303 1.53318 1.60379 1.63470 1.76576 2.03366 2.56088 3.15187 3.37481 3.52917 3.56748 3.67643 3.79354 3.98440 4.10313 4.17327 4.20984 4.27491 4.33729 4.38893 4.51200 4.52301 4.53123 4.57498 4.62031 4.75546 4.80162 4.99475 5.01724 5.08868 5.11885 5.14554 5.15528 5.19116 5.22658 5.33988 5.39397 5.41860 5.73267 5.86501 6.00219 6.15112 6.58050 6.63270 7.15990 7.17499 7.49911 8.78505 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030090 B = 0.004268 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.308182 B = 6559.488473 C = 6750.485641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.012 4.012 3 Si 1.113 2.887 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.288 1.288 7 C -0.643 4.643 8 H 0.061 0.939 9 C 0.220 3.780 10 O -0.586 6.586 11 C -0.142 4.142 12 C 0.105 3.895 13 N -0.614 5.614 14 C 0.515 3.485 15 O -0.594 6.594 16 C -0.086 4.086 17 H 0.115 0.885 18 C -0.103 4.103 19 C -0.055 4.055 20 H 0.104 0.896 21 C -0.180 4.180 22 C -0.156 4.156 23 C -0.046 4.046 24 H 0.061 0.939 25 C -0.106 4.106 26 C -0.106 4.106 27 C 0.135 3.865 28 H 0.275 0.725 29 H 0.372 0.628 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.110 0.890 36 H 0.121 0.879 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.024 0.976 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.854 -19.948 -5.518 21.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.215 4.215 3 Si 0.936 3.064 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.214 1.214 7 C -0.681 4.681 8 H 0.080 0.920 9 C 0.180 3.820 10 O -0.393 6.393 11 C -0.180 4.180 12 C -0.016 4.016 13 N -0.347 5.347 14 C 0.305 3.695 15 O -0.475 6.475 16 C -0.106 4.106 17 H 0.133 0.867 18 C -0.141 4.141 19 C -0.073 4.073 20 H 0.122 0.878 21 C -0.198 4.198 22 C -0.174 4.174 23 C -0.065 4.065 24 H 0.079 0.921 25 C -0.143 4.143 26 C -0.143 4.143 27 C 0.012 3.988 28 H 0.087 0.913 29 H 0.220 0.780 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.071 0.929 35 H 0.128 0.872 36 H 0.139 0.861 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.109 0.891 42 H 0.043 0.957 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.774 -18.081 -6.418 19.554 hybrid contribution -0.102 -0.430 0.398 0.595 sum 3.672 -18.511 -6.020 19.809 Atomic orbital electron populations 1.70711 1.08308 1.32287 1.44879 1.27168 0.96335 1.06335 0.91705 0.83013 0.74743 0.71625 0.77063 1.18834 1.20741 1.21431 1.22612 0.95236 0.92672 1.57586 0.92042 1.19963 0.85483 0.93194 0.83348 1.86342 1.39632 1.95752 1.17553 1.23163 0.98356 0.95209 1.01225 1.22289 0.89594 0.94955 0.94801 1.48779 1.33057 1.07886 1.44962 1.21302 0.78747 0.92155 0.77249 1.90632 1.41412 1.65970 1.49496 1.21483 0.98954 0.88503 1.01707 0.86743 1.21803 0.93716 1.00778 0.97762 1.20739 0.99182 0.94220 0.93198 0.87760 1.24037 0.95989 0.99840 0.99926 1.23705 0.98433 0.98708 0.96576 1.20496 0.96628 0.96960 0.92425 0.92057 1.21667 0.98842 0.91421 1.02391 1.21664 0.94350 0.96226 1.02077 1.22069 0.98457 0.81069 0.97252 0.91316 0.78030 0.90351 0.88788 0.90080 0.88639 0.92860 0.87206 0.86110 0.88734 0.89927 0.91209 0.90896 0.89134 0.95722 0.93351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.31 13.28 21.45 0.28 -57.03 16 2 C -0.01 -0.68 5.28 84.66 0.45 -0.24 16 3 Si 1.11 49.37 29.91 68.60 2.05 51.42 16 4 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.64 -33.92 8.22 25.60 0.21 -33.71 16 8 H 0.06 3.12 7.79 -2.91 -0.02 3.10 16 9 C 0.22 10.43 0.70 -10.15 -0.01 10.43 16 10 O -0.59 -28.50 11.53 -148.98 -1.72 -30.22 16 11 C -0.14 -4.96 6.13 31.78 0.19 -4.77 16 12 C 0.11 3.20 5.94 86.73 0.52 3.72 16 13 N -0.61 -24.97 3.23 -811.82 -2.62 -27.59 16 14 C 0.51 20.61 6.68 87.65 0.59 21.20 16 15 O -0.59 -29.51 15.22 -3.03 -0.05 -29.56 16 16 C -0.09 -2.31 2.05 -11.41 -0.02 -2.34 16 17 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 18 C -0.10 -2.12 3.80 30.74 0.12 -2.00 16 19 C -0.06 -0.99 3.58 -10.79 -0.04 -1.03 16 20 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 21 C -0.18 -4.38 9.81 25.00 0.25 -4.13 16 22 C -0.16 -4.57 8.26 25.00 0.21 -4.37 16 23 C -0.05 -1.23 2.69 -10.79 -0.03 -1.26 16 24 H 0.06 1.89 8.06 -2.39 -0.02 1.87 16 25 C -0.11 -1.86 5.67 30.77 0.17 -1.69 16 26 C -0.11 -1.49 5.67 30.75 0.17 -1.32 16 27 C 0.14 6.87 5.50 86.86 0.48 7.35 16 28 H 0.27 17.64 5.04 -92.71 -0.47 17.17 16 29 H 0.37 15.57 9.08 -74.05 -0.67 14.89 16 30 H 0.08 2.69 8.03 -2.39 -0.02 2.67 16 31 H 0.09 2.82 8.14 -2.38 -0.02 2.81 16 32 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.10 2.26 6.14 -2.39 -0.01 2.25 16 34 H 0.05 1.32 6.34 -2.39 -0.02 1.30 16 35 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.12 2.72 8.06 -2.91 -0.02 2.69 16 37 H 0.09 3.10 8.06 -2.91 -0.02 3.07 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.02 1.48 6.88 -2.39 -0.02 1.46 16 43 H 0.05 2.59 8.03 -2.39 -0.02 2.57 16 Total: -1.00 -74.76 329.25 1.83 -72.93 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: 0.63 Total: 34.21 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: 3.25 Total: -14.16 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -2.34 Total: -84.62 kcal Atomic # 8 Polarization: -58.02 SS G_CDS: -1.76 Total: -59.78 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 2.05 Total: 51.42 kcal Total: -74.76 1.83 -72.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593747637.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.271 kcal (2) G-P(sol) polarization free energy of solvation -74.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.87 seconds