Wall clock time and date at job start Tue Mar 31 2020 06:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47106 * 2 1 4 4 S 1.81401 * 109.46744 * 119.99777 * 2 1 3 5 5 C 1.76198 * 103.00222 * 70.49245 * 4 2 1 6 6 C 1.38733 * 120.09888 * 6.06665 * 5 4 2 7 7 C 1.38249 * 119.99210 * 179.74287 * 6 5 4 8 8 C 1.38263 * 120.19595 * 0.27837 * 7 6 5 9 9 C 1.38288 * 120.20831 * 359.97438 * 8 7 6 10 10 C 1.38641 * 120.00184 * 0.02562 * 9 8 7 11 11 N 1.40000 * 120.10049 * 179.97438 * 10 9 8 12 12 C 1.46507 * 119.99781 * 354.87790 * 11 10 9 13 13 C 1.52998 * 109.46824 * 184.99270 * 12 11 10 14 14 C 1.50699 * 115.55334 * 279.40781 * 13 12 11 15 15 H 1.07998 * 119.99892 * 95.15853 * 14 13 12 16 16 C 1.37883 * 119.99839 * 275.15999 * 14 13 12 17 17 N 1.31512 * 120.00143 * 5.09401 * 16 14 13 18 18 Si 1.86802 * 119.99761 * 185.08848 * 16 14 13 19 19 H 1.48502 * 109.46720 * 90.00417 * 18 16 14 20 20 H 1.48498 * 109.46737 * 209.99956 * 18 16 14 21 21 H 1.48494 * 109.47413 * 330.00505 * 18 16 14 22 22 C 1.53007 * 117.49830 * 133.70303 * 13 12 11 23 23 C 1.53000 * 117.49946 * 65.08066 * 13 12 11 24 24 H 1.09003 * 109.47131 * 295.06024 * 1 2 3 25 25 H 1.09001 * 109.47019 * 55.05027 * 1 2 3 26 26 H 1.08991 * 109.47627 * 175.05682 * 1 2 3 27 27 H 1.08990 * 109.47166 * 239.99844 * 2 1 3 28 28 H 1.09004 * 109.47150 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47343 * 299.99993 * 3 2 1 30 30 H 1.09004 * 109.47320 * 59.99754 * 3 2 1 31 31 H 1.07997 * 120.00117 * 0.02575 * 6 5 4 32 32 H 1.07999 * 119.89790 * 180.24880 * 7 6 5 33 33 H 1.07999 * 119.89867 * 179.97438 * 8 7 6 34 34 H 1.08001 * 119.99993 * 180.02562 * 9 8 7 35 35 H 0.97007 * 120.00361 * 174.87291 * 11 10 9 36 36 H 1.08993 * 109.46575 * 304.98793 * 12 11 10 37 37 H 1.08997 * 109.47418 * 64.99297 * 12 11 10 38 38 H 0.96996 * 120.00310 * 184.99884 * 17 16 14 39 39 H 1.09004 * 117.49698 * 359.97438 * 22 13 12 40 40 H 1.08996 * 117.50236 * 145.01949 * 22 13 12 41 41 H 1.09003 * 117.50081 * 214.97292 * 23 13 12 42 42 H 1.09002 * 117.50095 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1346 -0.8551 1.4812 5 6 1.7262 -2.5390 1.1613 6 6 1.2055 -2.9066 -0.0710 7 6 0.8908 -4.2293 -0.3214 8 6 1.0880 -5.1880 0.6551 9 6 1.6016 -4.8298 1.8881 10 6 1.9201 -3.5058 2.1484 11 7 2.4397 -3.1409 3.3961 12 6 2.5428 -4.1362 4.4662 13 6 3.0207 -3.4562 5.7507 14 6 4.5050 -3.2128 5.8439 15 1 4.9147 -2.2568 5.5532 16 6 5.3400 -4.2107 6.3002 17 7 4.8561 -5.4059 6.5590 18 14 7.1585 -3.8650 6.5507 19 1 7.3844 -3.3839 7.9373 20 1 7.9346 -5.1110 6.3265 21 1 7.6021 -2.8254 5.5876 22 6 2.2765 -3.7894 7.0454 23 6 2.0935 -2.4197 6.3885 24 1 -0.3633 0.4353 0.9309 25 1 -0.3633 0.5887 -0.8423 26 1 -0.3634 -1.0237 -0.0885 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.0504 -2.1603 -0.8360 32 1 0.4894 -4.5144 -1.2827 33 1 0.8401 -6.2198 0.4544 34 1 1.7546 -5.5815 2.6484 35 1 2.7315 -2.2290 3.5522 36 1 1.5661 -4.5889 4.6365 37 1 3.2557 -4.9083 4.1769 38 1 5.4271 -6.0865 6.9482 39 1 1.4461 -4.4926 6.9819 40 1 2.8604 -3.8326 7.9648 41 1 2.5571 -1.5619 6.8758 42 1 1.1431 -2.2218 5.8927 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594703741.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:16 Heat of formation + Delta-G solvation = 37.984691 kcal Electronic energy + Delta-G solvation = -20820.211261 eV Core-core repulsion = 17891.455311 eV Total energy + Delta-G solvation = -2928.755950 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.98327 -36.96146 -35.09813 -34.01419 -31.96856 -30.75771 -28.94065 -27.35614 -25.91494 -24.94090 -22.58302 -22.14854 -21.26056 -20.73096 -19.17883 -17.41242 -16.46845 -16.34971 -15.75987 -15.03193 -14.69159 -14.57734 -14.07341 -13.96154 -13.68592 -13.54195 -13.27363 -12.85812 -12.62955 -12.41190 -12.15135 -11.94400 -11.56612 -11.45643 -11.42197 -11.31447 -11.04800 -10.89138 -10.56730 -10.52822 -10.24678 -9.79221 -9.71156 -9.56283 -9.28822 -8.79661 -8.48582 -8.23860 -7.53829 -6.53595 -6.08860 -4.15890 1.59532 1.74275 1.98409 2.69565 3.27406 3.34895 3.38214 4.11755 4.15922 4.37862 4.63635 4.72763 5.05203 5.15774 5.20842 5.30569 5.35604 5.41002 5.54023 5.58640 5.62089 5.67822 5.78510 5.93548 5.96216 6.04971 6.06102 6.19814 6.34398 6.37842 6.52795 6.60206 6.65008 6.69239 6.77976 6.91249 7.05773 7.21965 7.39406 7.47869 7.82411 7.98686 8.35255 8.43160 8.86141 9.51169 10.99800 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015937 B = 0.004611 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.447543 B = 6071.050873 C = 6679.695572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.080 4.080 3 C -0.133 4.133 4 S -0.124 6.124 5 C -0.172 4.172 6 C -0.085 4.085 7 C -0.184 4.184 8 C -0.071 4.071 9 C -0.191 4.191 10 C 0.253 3.747 11 N -0.717 5.717 12 C 0.165 3.835 13 C 0.029 3.971 14 C -0.495 4.495 15 H 0.059 0.941 16 C 0.073 3.927 17 N -0.878 5.878 18 Si 0.889 3.111 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.147 4.147 23 C -0.208 4.208 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.127 0.873 35 H 0.402 0.598 36 H 0.034 0.966 37 H 0.067 0.933 38 H 0.261 0.739 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.596 6.644 -12.867 16.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.209 4.209 3 C -0.191 4.191 4 S 0.117 5.883 5 C -0.289 4.289 6 C -0.109 4.109 7 C -0.206 4.206 8 C -0.092 4.092 9 C -0.216 4.216 10 C 0.140 3.860 11 N -0.341 5.341 12 C 0.041 3.959 13 C 0.028 3.972 14 C -0.532 4.532 15 H 0.078 0.922 16 C -0.131 4.131 17 N -0.514 5.514 18 Si 0.716 3.284 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.185 4.185 23 C -0.245 4.245 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.144 0.856 35 H 0.238 0.762 36 H 0.052 0.948 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.926 6.871 -11.712 15.723 hybrid contribution 0.507 -0.328 -0.772 0.980 sum -7.420 6.543 -12.483 15.928 Atomic orbital electron populations 1.22168 0.93125 1.02944 1.02711 1.23276 0.99191 0.99483 0.98948 1.21599 1.01926 0.92919 1.02658 1.85357 1.76423 0.98807 1.27711 1.20953 1.14129 0.95856 0.97990 1.20814 0.98976 0.96658 0.94469 1.20609 1.07625 0.92767 0.99633 1.20862 0.96849 0.98765 0.92751 1.20656 1.07883 0.94179 0.98842 1.17535 0.91232 0.92035 0.85198 1.45214 1.66010 1.13826 1.09041 1.21135 0.97722 0.90533 0.86468 1.19001 0.92793 0.96441 0.88965 1.20412 0.89019 0.98828 1.44977 0.92244 1.24951 0.98397 0.94609 0.95096 1.69996 1.36434 1.02760 1.42223 0.86641 0.85358 0.77797 0.78581 1.20631 1.21220 1.19782 1.22507 1.01307 0.95757 0.98962 1.22963 1.00628 0.93686 1.07249 0.91364 0.92077 0.91710 0.89260 0.91533 0.91235 0.91644 0.86548 0.86916 0.86532 0.85560 0.76217 0.94783 0.91463 0.92955 0.91784 0.89848 0.90350 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.82 37.16 0.33 -1.17 16 2 C -0.08 -0.88 2.59 -26.73 -0.07 -0.95 16 3 C -0.13 -1.22 9.20 37.16 0.34 -0.88 16 4 S -0.12 -1.87 19.83 -107.50 -2.13 -4.00 16 5 C -0.17 -2.85 6.07 -38.92 -0.24 -3.09 16 6 C -0.09 -1.22 8.12 -39.39 -0.32 -1.54 16 7 C -0.18 -2.52 10.04 -39.57 -0.40 -2.92 16 8 C -0.07 -1.04 10.04 -39.55 -0.40 -1.44 16 9 C -0.19 -3.28 9.30 -39.41 -0.37 -3.65 16 10 C 0.25 4.68 6.66 -83.50 -0.56 4.13 16 11 N -0.72 -14.47 5.63 -58.45 -0.33 -14.79 16 12 C 0.16 3.64 4.82 -4.04 -0.02 3.62 16 13 C 0.03 0.69 1.34 -155.66 -0.21 0.48 16 14 C -0.49 -13.13 8.82 -34.44 -0.30 -13.43 16 15 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 16 C 0.07 1.96 5.40 -17.82 -0.10 1.86 16 17 N -0.88 -24.21 12.90 55.43 0.72 -23.49 16 18 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 C -0.15 -3.37 9.37 -26.73 -0.25 -3.62 16 23 C -0.21 -4.45 9.91 -26.73 -0.26 -4.72 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.70 6.09 -51.93 -0.32 0.38 16 27 H 0.09 0.94 6.81 -51.93 -0.35 0.59 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.12 1.40 4.87 -52.49 -0.26 1.15 16 32 H 0.11 1.25 8.06 -52.49 -0.42 0.82 16 33 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.13 2.20 6.76 -52.49 -0.36 1.84 16 35 H 0.40 8.27 7.04 -40.82 -0.29 7.98 16 36 H 0.03 0.72 7.71 -51.93 -0.40 0.32 16 37 H 0.07 1.65 7.97 -51.93 -0.41 1.23 16 38 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 39 H 0.06 1.38 8.08 -51.93 -0.42 0.96 16 40 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 41 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 42 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 352.45 15.07 5.31 5.31 Total: -1.00 -27.46 352.45 -10.85 -38.31 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -6.58 Total: 10.05 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: -2.82 Total: -27.30 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.39 Total: -38.29 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: -1.87 SS G_CDS: -2.13 Total: -4.00 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.46 -10.85 -38.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594703741.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.292 kcal (2) G-P(sol) polarization free energy of solvation -27.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds