Wall clock time and date at job start Tue Mar 31 2020 06:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47106 * 2 1 4 4 S 1.81401 * 109.46744 * 119.99777 * 2 1 3 5 5 C 1.76198 * 103.00222 * 70.49245 * 4 2 1 6 6 C 1.38733 * 120.09888 * 6.06665 * 5 4 2 7 7 C 1.38249 * 119.99210 * 179.74287 * 6 5 4 8 8 C 1.38263 * 120.19595 * 0.27837 * 7 6 5 9 9 C 1.38288 * 120.20831 * 359.97438 * 8 7 6 10 10 C 1.38641 * 120.00184 * 0.02562 * 9 8 7 11 11 N 1.40000 * 120.10049 * 179.97438 * 10 9 8 12 12 C 1.46507 * 119.99781 * 354.87790 * 11 10 9 13 13 C 1.52998 * 109.46824 * 184.99270 * 12 11 10 14 14 C 1.50699 * 115.55334 * 279.40781 * 13 12 11 15 15 H 1.07998 * 119.99892 * 95.15853 * 14 13 12 16 16 C 1.37883 * 119.99839 * 275.15999 * 14 13 12 17 17 N 1.31512 * 120.00143 * 5.09401 * 16 14 13 18 18 Si 1.86802 * 119.99761 * 185.08848 * 16 14 13 19 19 H 1.48502 * 109.46720 * 90.00417 * 18 16 14 20 20 H 1.48498 * 109.46737 * 209.99956 * 18 16 14 21 21 H 1.48494 * 109.47413 * 330.00505 * 18 16 14 22 22 C 1.53007 * 117.49830 * 133.70303 * 13 12 11 23 23 C 1.53000 * 117.49946 * 65.08066 * 13 12 11 24 24 H 1.09003 * 109.47131 * 295.06024 * 1 2 3 25 25 H 1.09001 * 109.47019 * 55.05027 * 1 2 3 26 26 H 1.08991 * 109.47627 * 175.05682 * 1 2 3 27 27 H 1.08990 * 109.47166 * 239.99844 * 2 1 3 28 28 H 1.09004 * 109.47150 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47343 * 299.99993 * 3 2 1 30 30 H 1.09004 * 109.47320 * 59.99754 * 3 2 1 31 31 H 1.07997 * 120.00117 * 0.02575 * 6 5 4 32 32 H 1.07999 * 119.89790 * 180.24880 * 7 6 5 33 33 H 1.07999 * 119.89867 * 179.97438 * 8 7 6 34 34 H 1.08001 * 119.99993 * 180.02562 * 9 8 7 35 35 H 0.97007 * 120.00361 * 174.87291 * 11 10 9 36 36 H 1.08993 * 109.46575 * 304.98793 * 12 11 10 37 37 H 1.08997 * 109.47418 * 64.99297 * 12 11 10 38 38 H 0.96996 * 120.00310 * 184.99884 * 17 16 14 39 39 H 1.09004 * 117.49698 * 359.97438 * 22 13 12 40 40 H 1.08996 * 117.50236 * 145.01949 * 22 13 12 41 41 H 1.09003 * 117.50081 * 214.97292 * 23 13 12 42 42 H 1.09002 * 117.50095 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1346 -0.8551 1.4812 5 6 1.7262 -2.5390 1.1613 6 6 1.2055 -2.9066 -0.0710 7 6 0.8908 -4.2293 -0.3214 8 6 1.0880 -5.1880 0.6551 9 6 1.6016 -4.8298 1.8881 10 6 1.9201 -3.5058 2.1484 11 7 2.4397 -3.1409 3.3961 12 6 2.5428 -4.1362 4.4662 13 6 3.0207 -3.4562 5.7507 14 6 4.5050 -3.2128 5.8439 15 1 4.9147 -2.2568 5.5532 16 6 5.3400 -4.2107 6.3002 17 7 4.8561 -5.4059 6.5590 18 14 7.1585 -3.8650 6.5507 19 1 7.3844 -3.3839 7.9373 20 1 7.9346 -5.1110 6.3265 21 1 7.6021 -2.8254 5.5876 22 6 2.2765 -3.7894 7.0454 23 6 2.0935 -2.4197 6.3885 24 1 -0.3633 0.4353 0.9309 25 1 -0.3633 0.5887 -0.8423 26 1 -0.3634 -1.0237 -0.0885 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.0504 -2.1603 -0.8360 32 1 0.4894 -4.5144 -1.2827 33 1 0.8401 -6.2198 0.4544 34 1 1.7546 -5.5815 2.6484 35 1 2.7315 -2.2290 3.5522 36 1 1.5661 -4.5889 4.6365 37 1 3.2557 -4.9083 4.1769 38 1 5.4271 -6.0865 6.9482 39 1 1.4461 -4.4926 6.9819 40 1 2.8604 -3.8326 7.9648 41 1 2.5571 -1.5619 6.8758 42 1 1.1431 -2.2218 5.8927 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594703741.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:14 Heat of formation + Delta-G solvation = 25.782605 kcal Electronic energy + Delta-G solvation = -20820.740383 eV Core-core repulsion = 17891.455311 eV Total energy + Delta-G solvation = -2929.285072 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.28484 -38.67385 -36.08252 -35.33000 -34.00164 -31.94373 -30.32746 -28.12582 -27.79343 -26.63762 -23.78808 -23.23183 -22.93721 -21.97479 -21.01781 -18.71525 -18.09766 -17.57175 -17.11595 -16.65440 -16.26784 -15.80751 -15.57823 -15.22752 -14.98131 -14.68742 -14.58971 -14.34422 -13.96632 -13.56520 -13.37036 -13.22207 -13.06464 -13.02954 -12.82430 -12.43221 -12.37931 -12.25090 -12.24867 -12.07364 -11.68096 -11.47103 -11.12637 -10.80583 -10.70672 -10.49237 -10.43970 -10.09305 -8.80967 -8.14251 -7.85533 -6.25933 0.39986 0.67386 0.75292 1.38474 1.40754 1.49295 1.62095 2.40191 2.63141 2.93538 3.14956 3.51875 3.81990 3.92989 3.97362 4.18648 4.24039 4.29187 4.50884 4.53177 4.57189 4.58342 4.71582 4.72749 4.76917 4.79525 4.86357 4.93360 4.93597 4.98913 5.04874 5.21731 5.24311 5.28825 5.32297 5.47344 5.57987 5.60854 5.71547 5.73897 6.03533 6.34799 6.49754 6.78134 6.94105 7.42958 8.94062 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015937 B = 0.004611 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.447543 B = 6071.050873 C = 6679.695572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.065 4.065 3 C -0.131 4.131 4 S -0.176 6.176 5 C -0.175 4.175 6 C -0.086 4.086 7 C -0.172 4.172 8 C -0.073 4.073 9 C -0.210 4.210 10 C 0.219 3.781 11 N -0.726 5.726 12 C 0.188 3.812 13 C 0.005 3.995 14 C -0.507 4.507 15 H 0.048 0.952 16 C 0.030 3.970 17 N -0.902 5.902 18 Si 0.945 3.055 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.149 4.149 23 C -0.182 4.182 24 H 0.058 0.942 25 H 0.089 0.911 26 H 0.056 0.944 27 H 0.099 0.901 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.143 0.857 32 H 0.150 0.850 33 H 0.144 0.856 34 H 0.112 0.888 35 H 0.397 0.603 36 H 0.037 0.963 37 H 0.031 0.969 38 H 0.261 0.739 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.670 7.647 -15.418 19.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.194 4.194 3 C -0.189 4.189 4 S 0.065 5.935 5 C -0.291 4.291 6 C -0.110 4.110 7 C -0.193 4.193 8 C -0.093 4.093 9 C -0.234 4.234 10 C 0.109 3.891 11 N -0.353 5.353 12 C 0.064 3.936 13 C 0.004 3.996 14 C -0.545 4.545 15 H 0.066 0.934 16 C -0.171 4.171 17 N -0.540 5.540 18 Si 0.771 3.229 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.188 4.188 23 C -0.220 4.220 24 H 0.077 0.923 25 H 0.108 0.892 26 H 0.075 0.925 27 H 0.117 0.883 28 H 0.079 0.921 29 H 0.117 0.883 30 H 0.079 0.921 31 H 0.161 0.839 32 H 0.168 0.832 33 H 0.162 0.838 34 H 0.130 0.870 35 H 0.232 0.768 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.017 7.878 -14.292 18.645 hybrid contribution 0.776 -0.592 -0.133 0.985 sum -8.241 7.286 -14.425 18.140 Atomic orbital electron populations 1.22137 0.92053 1.02913 1.03490 1.23420 0.99883 0.99685 0.96407 1.21635 1.01638 0.91855 1.03821 1.85549 1.77206 0.99201 1.31587 1.21131 1.13776 0.95952 0.98274 1.21200 0.97899 0.97794 0.94073 1.21083 1.05522 0.92100 1.00621 1.21201 0.95848 1.00579 0.91699 1.20772 1.09053 0.93624 1.00000 1.17832 0.92909 0.93187 0.85189 1.44978 1.67800 1.12947 1.09547 1.20626 0.96591 0.89981 0.86441 1.19068 0.92131 0.98388 0.89990 1.20631 0.90784 0.98336 1.44760 0.93386 1.25587 1.01901 0.94499 0.95102 1.70088 1.37591 1.03308 1.43001 0.85751 0.81077 0.77469 0.78556 1.19954 1.21038 1.19833 1.22434 1.01353 0.97217 0.97758 1.22905 1.00574 0.92818 1.05672 0.92254 0.89190 0.92480 0.88304 0.92111 0.88289 0.92097 0.83906 0.83231 0.83797 0.86990 0.76773 0.94474 0.95035 0.93018 0.90607 0.91761 0.90237 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 8.82 71.98 0.63 -1.86 16 2 C -0.07 -1.28 2.59 30.59 0.08 -1.20 16 3 C -0.13 -2.08 9.20 71.98 0.66 -1.42 16 4 S -0.18 -5.27 19.83 -56.49 -1.12 -6.39 16 5 C -0.17 -5.67 6.07 22.70 0.14 -5.53 16 6 C -0.09 -2.24 8.12 22.39 0.18 -2.05 16 7 C -0.17 -4.12 10.04 22.28 0.22 -3.89 16 8 C -0.07 -1.98 10.04 22.29 0.22 -1.76 16 9 C -0.21 -7.31 9.30 22.38 0.21 -7.10 16 10 C 0.22 8.26 6.66 38.24 0.25 8.51 16 11 N -0.73 -30.47 5.63 -338.83 -1.91 -32.38 16 12 C 0.19 8.68 4.82 86.38 0.42 9.10 16 13 C 0.00 0.24 1.34 -52.93 -0.07 0.17 16 14 C -0.51 -27.74 8.82 25.60 0.23 -27.51 16 15 H 0.05 2.66 7.82 -2.91 -0.02 2.64 16 16 C 0.03 1.64 5.40 84.66 0.46 2.10 16 17 N -0.90 -51.13 12.90 21.45 0.28 -50.85 16 18 Si 0.95 43.82 29.54 68.60 2.03 45.84 16 19 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 21 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 22 C -0.15 -6.97 9.37 30.60 0.29 -6.68 16 23 C -0.18 -7.85 9.91 30.60 0.30 -7.55 16 24 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.06 1.06 6.09 -2.39 -0.01 1.04 16 27 H 0.10 1.76 6.81 -2.40 -0.02 1.74 16 28 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.14 2.90 4.87 -2.91 -0.01 2.89 16 32 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 33 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 34 H 0.11 4.11 6.76 -2.91 -0.02 4.09 16 35 H 0.40 17.03 7.04 -92.70 -0.65 16.38 16 36 H 0.04 1.64 7.71 -2.39 -0.02 1.62 16 37 H 0.03 1.64 7.97 -2.39 -0.02 1.63 16 38 H 0.26 14.15 8.32 -92.71 -0.77 13.37 16 39 H 0.08 3.30 8.08 -2.38 -0.02 3.28 16 40 H 0.06 3.21 8.14 -2.39 -0.02 3.19 16 41 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 42 H 0.08 3.31 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -60.88 352.45 3.85 -57.03 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: 0.35 Total: 33.42 kcal Atomic # 6 Polarization: -50.89 SS G_CDS: 4.22 Total: -46.67 kcal Atomic # 7 Polarization: -81.60 SS G_CDS: -1.63 Total: -83.23 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -5.27 SS G_CDS: -1.12 Total: -6.39 kcal Total: -60.88 3.85 -57.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594703741.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.817 kcal (2) G-P(sol) polarization free energy of solvation -60.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds