Wall clock time and date at job start Tue Mar 31 2020 08:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99898 * 2 1 4 4 H 1.48498 * 109.47071 * 269.99937 * 3 2 1 5 5 H 1.48496 * 109.47120 * 30.00157 * 3 2 1 6 6 H 1.48498 * 109.46854 * 150.00401 * 3 2 1 7 7 C 1.37875 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00065 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99956 * 179.97438 * 7 2 1 10 10 C 1.53512 * 114.16708 * 179.97438 * 9 7 2 11 11 N 1.47481 * 87.93402 * 220.14094 * 10 9 7 12 12 C 1.46893 * 110.99963 * 138.70607 * 11 10 9 13 13 C 1.53004 * 109.47274 * 170.00190 * 12 11 10 14 14 H 1.09003 * 109.46501 * 59.99928 * 13 12 11 15 15 O 1.42897 * 109.47137 * 300.00319 * 13 12 11 16 16 C 1.52998 * 109.47129 * 179.97438 * 13 12 11 17 17 O 1.42901 * 109.46912 * 185.00000 * 16 13 12 18 18 C 1.42892 * 113.99996 * 180.02562 * 17 16 13 19 19 C 1.50702 * 109.47389 * 180.02562 * 18 17 16 20 20 C 1.38234 * 119.99895 * 269.72774 * 19 18 17 21 21 C 1.38240 * 120.00062 * 180.32314 * 20 19 18 22 22 C 1.38234 * 119.99686 * 359.92348 * 21 20 19 23 23 C 1.38234 * 120.00244 * 0.07174 * 22 21 20 24 24 C 1.38230 * 119.99864 * 359.95693 * 23 22 21 25 25 C 1.47479 * 87.83253 * 27.01423 * 11 10 9 26 26 H 0.97001 * 120.00101 * 359.97438 * 1 2 3 27 27 H 1.08993 * 113.25544 * 312.95163 * 9 7 2 28 28 H 1.09005 * 113.47157 * 105.37752 * 10 9 7 29 29 H 1.08996 * 113.53396 * 334.92203 * 10 9 7 30 30 H 1.09003 * 109.47291 * 50.00136 * 12 11 10 31 31 H 1.09004 * 109.47233 * 290.00533 * 12 11 10 32 32 H 0.96701 * 114.00003 * 300.00284 * 15 13 12 33 33 H 1.09002 * 109.46746 * 65.00384 * 16 13 12 34 34 H 1.08988 * 109.47488 * 305.00164 * 16 13 12 35 35 H 1.09003 * 109.47158 * 60.00239 * 18 17 16 36 36 H 1.09001 * 109.47538 * 300.00407 * 18 17 16 37 37 H 1.08001 * 120.00279 * 0.27436 * 20 19 18 38 38 H 1.07997 * 119.99831 * 179.97438 * 21 20 19 39 39 H 1.07999 * 119.99747 * 180.02562 * 22 21 20 40 40 H 1.08002 * 119.99744 * 179.97438 * 23 22 21 41 41 H 1.08000 * 120.00356 * 179.97438 * 24 23 22 42 42 H 1.09003 * 113.47714 * 87.75917 * 25 11 10 43 43 H 1.09001 * 113.47817 * 218.22385 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.1401 -2.5946 -0.0010 11 7 5.1466 -2.0846 0.9486 12 6 5.4213 -3.0691 2.0036 13 6 6.6357 -2.6184 2.8181 14 1 6.4297 -1.6485 3.2708 15 8 7.7724 -2.5113 1.9588 16 6 6.9214 -3.6435 3.9174 17 8 7.9808 -3.1668 4.7495 18 6 8.3285 -4.0547 5.8136 19 6 9.4494 -3.4547 6.6227 20 6 10.7636 -3.7215 6.2872 21 6 11.7918 -3.1765 7.0334 22 6 11.5057 -2.3634 8.1141 23 6 10.1915 -2.0965 8.4495 24 6 9.1634 -2.6420 7.7037 25 6 4.1448 -1.0982 1.3940 26 1 -0.4850 0.8400 0.0004 27 1 3.9416 -0.5115 -0.7341 28 1 4.5593 -2.8824 -0.9652 29 1 3.4926 -3.3621 0.4229 30 1 5.6272 -4.0390 1.5509 31 1 4.5542 -3.1508 2.6591 32 1 8.0137 -3.3390 1.5208 33 1 7.2138 -4.5906 3.4638 34 1 6.0247 -3.7904 4.5192 35 1 8.6503 -5.0102 5.3991 36 1 7.4611 -4.2106 6.4550 37 1 10.9872 -4.3564 5.4426 38 1 12.8185 -3.3853 6.7716 39 1 12.3090 -1.9372 8.6968 40 1 9.9680 -1.4615 9.2941 41 1 8.1366 -2.4338 7.9659 42 1 3.4980 -1.4656 2.1908 43 1 4.5680 -0.1177 1.6123 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594716239.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:45 Heat of formation + Delta-G solvation = -34.146582 kcal Electronic energy + Delta-G solvation = -22227.206236 eV Core-core repulsion = 18852.569569 eV Total energy + Delta-G solvation = -3374.636668 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.69943 -39.35862 -38.08987 -36.33910 -32.70421 -32.33586 -31.18095 -31.11689 -28.61478 -26.40602 -25.19967 -25.03398 -22.86565 -22.55456 -21.66036 -21.00967 -18.66660 -17.32048 -17.23186 -16.73764 -16.58608 -16.11309 -15.56861 -15.39341 -15.11630 -14.59792 -14.50498 -14.04394 -13.68866 -13.55569 -13.35882 -13.07411 -12.98342 -12.54613 -12.35648 -12.13924 -11.82774 -11.56265 -11.31283 -11.26033 -11.05573 -10.74462 -10.36082 -10.25909 -9.95257 -9.84595 -9.66524 -9.48346 -9.19358 -9.14194 -9.09626 -8.56545 -8.12650 -6.11747 -4.12482 0.98133 1.12920 3.22714 3.30823 3.39233 3.45426 3.75808 4.41792 4.42257 4.51494 4.57085 4.71030 4.78258 4.85952 4.93812 4.98671 5.03092 5.12229 5.15505 5.23490 5.25845 5.33374 5.36567 5.42618 5.67926 5.75154 5.75474 5.88959 6.02892 6.14264 6.15831 6.21881 6.29597 6.31373 6.42080 6.49587 6.69643 6.76087 6.95800 6.97573 7.34548 7.66916 7.80570 7.90159 8.47114 8.90643 9.51419 11.00577 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026313 B = 0.002558 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.868561 B =10942.855721 C =11375.499098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.256 1.256 7 C -0.512 4.512 8 H 0.073 0.927 9 C 0.001 3.999 10 C 0.008 3.992 11 N -0.470 5.470 12 C -0.009 4.009 13 C 0.122 3.878 14 H 0.103 0.897 15 O -0.538 6.538 16 C 0.030 3.970 17 O -0.369 6.369 18 C 0.100 3.900 19 C -0.088 4.088 20 C -0.098 4.098 21 C -0.124 4.124 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.099 4.099 25 C -0.013 4.013 26 H 0.264 0.736 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.365 0.635 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.064 0.936 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.424 -9.559 15.153 27.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.181 1.181 7 C -0.549 4.549 8 H 0.091 0.909 9 C -0.018 4.018 10 C -0.121 4.121 11 N -0.192 5.192 12 C -0.139 4.139 13 C 0.062 3.938 14 H 0.121 0.879 15 O -0.341 6.341 16 C -0.048 4.048 17 O -0.288 6.288 18 C 0.024 3.976 19 C -0.088 4.088 20 C -0.116 4.116 21 C -0.142 4.142 22 C -0.134 4.134 23 C -0.142 4.142 24 C -0.117 4.117 25 C -0.142 4.142 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.211 0.789 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.082 0.918 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 21.005 -8.455 15.120 27.227 hybrid contribution -0.629 -0.347 0.388 0.816 sum 20.376 -8.803 15.508 27.077 Atomic orbital electron populations 1.69911 1.06423 1.27151 1.50153 1.25020 0.94661 0.99310 0.93921 0.86864 0.80794 0.83274 0.78765 1.20247 1.21510 1.18050 1.20909 0.88241 0.94481 1.51318 0.90864 1.20491 0.96170 0.92735 0.92445 1.23811 0.92462 0.99509 0.96293 1.68860 1.31201 1.09258 1.09915 1.23252 0.97602 0.97244 0.95819 1.21765 0.85493 0.99086 0.87446 0.87929 1.86665 1.47463 1.37307 1.62699 1.23345 0.90297 0.97809 0.93306 1.88061 1.54142 1.44764 1.41858 1.21320 0.95205 0.92393 0.88709 1.19618 0.93989 0.99187 0.96038 1.21080 0.92051 0.99544 0.98916 1.21156 0.99169 0.98046 0.95874 1.21204 0.96684 0.98183 0.97367 1.21161 0.92837 1.00148 1.00066 1.21098 0.99574 0.96049 0.94957 1.24472 0.92296 0.96130 1.01312 0.92585 0.92523 0.91508 0.92226 0.91338 0.92945 0.78895 0.93052 0.92437 0.92569 0.92525 0.85927 0.85906 0.86034 0.85882 0.85884 0.91821 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 21.39 27.14 -169.99 -4.61 16.78 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.26 -6.01 5.68 56.52 0.32 -5.69 16 7 C -0.51 -14.08 9.38 -34.44 -0.32 -14.40 16 8 H 0.07 2.17 8.06 -52.49 -0.42 1.75 16 9 C 0.00 0.02 2.95 -91.24 -0.27 -0.25 16 10 C 0.01 0.16 7.24 -7.55 -0.05 0.10 16 11 N -0.47 -8.93 6.20 -244.65 -1.52 -10.44 16 12 C -0.01 -0.14 4.48 -3.83 -0.02 -0.16 16 13 C 0.12 1.74 3.52 -26.73 -0.09 1.64 16 14 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 15 O -0.54 -8.19 13.17 -40.06 -0.53 -8.72 16 16 C 0.03 0.34 5.57 37.16 0.21 0.55 16 17 O -0.37 -4.76 10.29 -40.06 -0.41 -5.18 16 18 C 0.10 0.99 6.06 36.01 0.22 1.21 16 19 C -0.09 -0.91 5.51 -104.62 -0.58 -1.49 16 20 C -0.10 -0.93 9.70 -39.58 -0.38 -1.31 16 21 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 22 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 23 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 24 C -0.10 -0.96 9.70 -39.59 -0.38 -1.34 16 25 C -0.01 -0.28 6.70 -7.55 -0.05 -0.33 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.06 1.36 7.04 -51.93 -0.37 1.00 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.06 1.17 7.87 -51.93 -0.41 0.76 16 30 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 31 H 0.05 0.79 7.30 -51.93 -0.38 0.41 16 32 H 0.37 4.13 9.05 45.56 0.41 4.54 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.59 8.14 -51.94 -0.42 0.17 16 35 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 36 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 37 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 42 H 0.06 1.36 7.38 -51.93 -0.38 0.97 16 43 H 0.06 1.41 7.11 -51.93 -0.37 1.04 16 LS Contribution 356.29 15.07 5.37 5.37 Total: -1.00 -32.35 356.29 -10.14 -42.50 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -6.20 Total: 4.08 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -3.02 Total: -18.06 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: -0.74 Total: -36.76 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.94 Total: -13.90 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.61 Total: 16.78 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.35 -10.14 -42.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594716239.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.349 kcal (2) G-P(sol) polarization free energy of solvation -32.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds