Wall clock time and date at job start Tue Mar 31 2020 08:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99898 * 2 1 4 4 H 1.48498 * 109.47071 * 269.99937 * 3 2 1 5 5 H 1.48496 * 109.47120 * 30.00157 * 3 2 1 6 6 H 1.48498 * 109.46854 * 150.00401 * 3 2 1 7 7 C 1.37875 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00065 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99956 * 179.97438 * 7 2 1 10 10 C 1.53512 * 114.16708 * 179.97438 * 9 7 2 11 11 N 1.47481 * 87.93402 * 220.14094 * 10 9 7 12 12 C 1.46893 * 110.99963 * 138.70607 * 11 10 9 13 13 C 1.53004 * 109.47274 * 170.00190 * 12 11 10 14 14 H 1.09003 * 109.46501 * 59.99928 * 13 12 11 15 15 O 1.42897 * 109.47137 * 300.00319 * 13 12 11 16 16 C 1.52998 * 109.47129 * 179.97438 * 13 12 11 17 17 O 1.42901 * 109.46912 * 185.00000 * 16 13 12 18 18 C 1.42892 * 113.99996 * 180.02562 * 17 16 13 19 19 C 1.50702 * 109.47389 * 180.02562 * 18 17 16 20 20 C 1.38234 * 119.99895 * 269.72774 * 19 18 17 21 21 C 1.38240 * 120.00062 * 180.32314 * 20 19 18 22 22 C 1.38234 * 119.99686 * 359.92348 * 21 20 19 23 23 C 1.38234 * 120.00244 * 0.07174 * 22 21 20 24 24 C 1.38230 * 119.99864 * 359.95693 * 23 22 21 25 25 C 1.47479 * 87.83253 * 27.01423 * 11 10 9 26 26 H 0.97001 * 120.00101 * 359.97438 * 1 2 3 27 27 H 1.08993 * 113.25544 * 312.95163 * 9 7 2 28 28 H 1.09005 * 113.47157 * 105.37752 * 10 9 7 29 29 H 1.08996 * 113.53396 * 334.92203 * 10 9 7 30 30 H 1.09003 * 109.47291 * 50.00136 * 12 11 10 31 31 H 1.09004 * 109.47233 * 290.00533 * 12 11 10 32 32 H 0.96701 * 114.00003 * 300.00284 * 15 13 12 33 33 H 1.09002 * 109.46746 * 65.00384 * 16 13 12 34 34 H 1.08988 * 109.47488 * 305.00164 * 16 13 12 35 35 H 1.09003 * 109.47158 * 60.00239 * 18 17 16 36 36 H 1.09001 * 109.47538 * 300.00407 * 18 17 16 37 37 H 1.08001 * 120.00279 * 0.27436 * 20 19 18 38 38 H 1.07997 * 119.99831 * 179.97438 * 21 20 19 39 39 H 1.07999 * 119.99747 * 180.02562 * 22 21 20 40 40 H 1.08002 * 119.99744 * 179.97438 * 23 22 21 41 41 H 1.08000 * 120.00356 * 179.97438 * 24 23 22 42 42 H 1.09003 * 113.47714 * 87.75917 * 25 11 10 43 43 H 1.09001 * 113.47817 * 218.22385 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.1401 -2.5946 -0.0010 11 7 5.1466 -2.0846 0.9486 12 6 5.4213 -3.0691 2.0036 13 6 6.6357 -2.6184 2.8181 14 1 6.4297 -1.6485 3.2708 15 8 7.7724 -2.5113 1.9588 16 6 6.9214 -3.6435 3.9174 17 8 7.9808 -3.1668 4.7495 18 6 8.3285 -4.0547 5.8136 19 6 9.4494 -3.4547 6.6227 20 6 10.7636 -3.7215 6.2872 21 6 11.7918 -3.1765 7.0334 22 6 11.5057 -2.3634 8.1141 23 6 10.1915 -2.0965 8.4495 24 6 9.1634 -2.6420 7.7037 25 6 4.1448 -1.0982 1.3940 26 1 -0.4850 0.8400 0.0004 27 1 3.9416 -0.5115 -0.7341 28 1 4.5593 -2.8824 -0.9652 29 1 3.4926 -3.3621 0.4229 30 1 5.6272 -4.0390 1.5509 31 1 4.5542 -3.1508 2.6591 32 1 8.0137 -3.3390 1.5208 33 1 7.2138 -4.5906 3.4638 34 1 6.0247 -3.7904 4.5192 35 1 8.6503 -5.0102 5.3991 36 1 7.4611 -4.2106 6.4550 37 1 10.9872 -4.3564 5.4426 38 1 12.8185 -3.3853 6.7716 39 1 12.3090 -1.9372 8.6968 40 1 9.9680 -1.4615 9.2941 41 1 8.1366 -2.4338 7.9659 42 1 3.4980 -1.4656 2.1908 43 1 4.5680 -0.1177 1.6123 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594716239.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:44 Heat of formation + Delta-G solvation = -58.124048 kcal Electronic energy + Delta-G solvation = -22228.245977 eV Core-core repulsion = 18852.569569 eV Total energy + Delta-G solvation = -3375.676408 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.95550 -40.30184 -39.06842 -37.39884 -34.74960 -33.13123 -32.43095 -31.81166 -30.04539 -27.54122 -26.70153 -26.41418 -23.97026 -23.50251 -22.52391 -22.07356 -20.43685 -19.17830 -17.99851 -17.88487 -17.51545 -16.96230 -16.70352 -16.48289 -16.40081 -16.02412 -15.53910 -15.19837 -15.10668 -14.70761 -14.44733 -14.29171 -14.17980 -13.66661 -13.45373 -13.29797 -13.06472 -12.98780 -12.84843 -12.19439 -12.00444 -11.93262 -11.89731 -11.81462 -11.68605 -11.38832 -11.11632 -10.84288 -10.65514 -10.64461 -9.84468 -9.78250 -9.68952 -8.30369 -6.34930 0.31637 0.47789 1.37073 1.40016 1.52550 2.36855 2.43771 2.95964 3.03312 3.33418 3.58737 3.76570 3.89226 3.95467 4.02904 4.11112 4.12938 4.16699 4.27090 4.29690 4.33817 4.37849 4.41954 4.47761 4.58372 4.63424 4.68858 4.72056 4.74939 4.90444 4.99091 5.03406 5.05823 5.13332 5.43604 5.46851 5.52662 5.58844 5.62937 5.64534 6.07286 6.15767 6.27981 6.29627 6.70710 6.95125 7.32203 8.85363 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026313 B = 0.002558 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.868561 B =10942.855721 C =11375.499098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.017 3.983 3 Si 0.940 3.060 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.241 1.241 7 C -0.511 4.511 8 H 0.037 0.963 9 C -0.016 4.016 10 C 0.019 3.981 11 N -0.469 5.469 12 C -0.008 4.008 13 C 0.128 3.872 14 H 0.076 0.924 15 O -0.559 6.559 16 C 0.036 3.964 17 O -0.396 6.396 18 C 0.099 3.901 19 C -0.110 4.110 20 C -0.113 4.113 21 C -0.132 4.132 22 C -0.122 4.122 23 C -0.133 4.133 24 C -0.117 4.117 25 C -0.004 4.004 26 H 0.266 0.734 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.382 0.618 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.132 0.868 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.141 0.859 41 H 0.127 0.873 42 H 0.060 0.940 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.848 -10.053 15.914 29.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.181 4.181 3 Si 0.764 3.236 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.165 1.165 7 C -0.550 4.550 8 H 0.056 0.944 9 C -0.036 4.036 10 C -0.110 4.110 11 N -0.191 5.191 12 C -0.138 4.138 13 C 0.068 3.932 14 H 0.094 0.906 15 O -0.365 6.365 16 C -0.041 4.041 17 O -0.316 6.316 18 C 0.023 3.977 19 C -0.110 4.110 20 C -0.131 4.131 21 C -0.150 4.150 22 C -0.140 4.140 23 C -0.151 4.151 24 C -0.135 4.135 25 C -0.134 4.134 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.230 0.770 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.150 0.850 38 H 0.161 0.839 39 H 0.163 0.837 40 H 0.159 0.841 41 H 0.145 0.855 42 H 0.078 0.922 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 23.453 -8.979 15.881 29.714 hybrid contribution -1.350 -0.287 0.169 1.390 sum 22.104 -9.266 16.051 28.845 Atomic orbital electron populations 1.70044 1.08201 1.28149 1.52234 1.25859 0.95356 1.03068 0.93839 0.85849 0.79954 0.78741 0.79097 1.19618 1.21369 1.16462 1.21131 0.90552 0.93039 1.50231 0.94437 1.20497 0.93529 0.95561 0.93964 1.23676 0.92411 0.97357 0.97537 1.68799 1.29702 1.09774 1.10858 1.23309 0.98115 0.97311 0.95035 1.21599 0.84886 0.98716 0.88003 0.90599 1.86619 1.47687 1.39025 1.63208 1.23239 0.90711 0.97501 0.92625 1.88011 1.54564 1.46265 1.42810 1.21450 0.95580 0.92454 0.88193 1.19833 0.94579 0.99972 0.96585 1.21319 0.92157 1.00041 0.99542 1.21486 1.00051 0.97689 0.95727 1.21558 0.97209 0.97810 0.97405 1.21467 0.92972 1.00187 1.00480 1.21315 1.00267 0.96522 0.95390 1.24240 0.92661 0.96904 0.99559 0.92477 0.92766 0.89891 0.92112 0.88635 0.92708 0.76951 0.90568 0.91327 0.91011 0.91564 0.85048 0.83868 0.83746 0.84126 0.85488 0.92220 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.42 13.96 21.45 0.30 -58.12 16 2 C 0.02 0.95 5.47 84.65 0.46 1.41 16 3 Si 0.94 44.25 27.14 68.60 1.86 46.11 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.24 -10.67 5.68 99.48 0.56 -10.10 16 7 C -0.51 -28.57 9.38 25.60 0.24 -28.33 16 8 H 0.04 2.30 8.06 -2.91 -0.02 2.28 16 9 C -0.02 -0.75 2.95 -11.19 -0.03 -0.78 16 10 C 0.02 0.72 7.24 83.57 0.61 1.32 16 11 N -0.47 -16.86 6.20 -927.93 -5.75 -22.61 16 12 C -0.01 -0.23 4.48 86.31 0.39 0.15 16 13 C 0.13 3.39 3.52 30.60 0.11 3.50 16 14 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 15 O -0.56 -15.87 13.17 -144.36 -1.90 -17.77 16 16 C 0.04 0.74 5.57 71.98 0.40 1.14 16 17 O -0.40 -9.62 10.29 -144.36 -1.49 -11.11 16 18 C 0.10 1.80 6.06 71.24 0.43 2.24 16 19 C -0.11 -2.16 5.51 -19.87 -0.11 -2.27 16 20 C -0.11 -2.01 9.70 22.27 0.22 -1.79 16 21 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 22 C -0.12 -1.77 10.05 22.27 0.22 -1.55 16 23 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 24 C -0.12 -2.19 9.70 22.27 0.22 -1.97 16 25 C 0.00 -0.18 6.70 83.57 0.56 0.38 16 26 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 27 H 0.05 2.54 7.04 -2.39 -0.02 2.52 16 28 H 0.08 2.90 8.14 -2.38 -0.02 2.88 16 29 H 0.06 2.30 7.87 -2.39 -0.02 2.28 16 30 H 0.10 2.15 8.08 -2.39 -0.02 2.13 16 31 H 0.05 1.52 7.30 -2.38 -0.02 1.50 16 32 H 0.38 7.59 9.05 -74.06 -0.67 6.92 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.07 1.04 8.08 -2.39 -0.02 1.02 16 36 H 0.07 1.04 8.08 -2.39 -0.02 1.02 16 37 H 0.13 1.96 8.06 -2.91 -0.02 1.94 16 38 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 39 H 0.14 1.34 8.06 -2.91 -0.02 1.31 16 40 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 41 H 0.13 2.12 8.06 -2.91 -0.02 2.09 16 42 H 0.06 2.50 7.38 -2.39 -0.02 2.49 16 43 H 0.06 2.54 7.11 -2.39 -0.02 2.53 16 Total: -1.00 -70.24 356.29 -2.65 -72.88 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.17 Total: 20.84 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 4.16 Total: -30.24 kcal Atomic # 7 Polarization: -75.27 SS G_CDS: -5.45 Total: -80.73 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -3.39 Total: -28.88 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.86 Total: 46.11 kcal Total: -70.24 -2.65 -72.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594716239.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.760 kcal (2) G-P(sol) polarization free energy of solvation -70.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds