Wall clock time and date at job start Tue Mar 31 2020 08:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00094 * 2 1 4 4 H 1.48501 * 109.47081 * 269.99869 * 3 2 1 5 5 H 1.48497 * 109.47099 * 30.00088 * 3 2 1 6 6 H 1.48507 * 109.47204 * 150.00192 * 3 2 1 7 7 C 1.37874 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00078 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99989 * 0.02562 * 7 2 1 10 10 C 1.53510 * 114.16738 * 179.97438 * 9 7 2 11 11 N 1.47473 * 87.93064 * 220.13759 * 10 9 7 12 12 C 1.46900 * 110.99932 * 138.70888 * 11 10 9 13 13 C 1.53003 * 109.47407 * 169.99733 * 12 11 10 14 14 H 1.08999 * 109.47269 * 305.00036 * 13 12 11 15 15 O 1.42903 * 109.46459 * 64.99929 * 13 12 11 16 16 C 1.53001 * 109.47376 * 184.99739 * 13 12 11 17 17 O 1.42897 * 109.47164 * 175.00429 * 16 13 12 18 18 C 1.42893 * 114.00118 * 180.02562 * 17 16 13 19 19 C 1.50705 * 109.47282 * 179.97438 * 18 17 16 20 20 C 1.38240 * 119.99975 * 269.72816 * 19 18 17 21 21 C 1.38224 * 119.99898 * 179.76584 * 20 19 18 22 22 C 1.38239 * 120.00321 * 0.48589 * 21 20 19 23 23 C 1.38237 * 119.99493 * 359.78773 * 22 21 20 24 24 C 1.38228 * 120.00029 * 90.00245 * 19 18 17 25 25 C 1.47476 * 87.83857 * 27.01345 * 11 10 9 26 26 H 0.97005 * 119.99423 * 359.97438 * 1 2 3 27 27 H 1.08996 * 113.25252 * 312.94544 * 9 7 2 28 28 H 1.09003 * 113.47478 * 105.37270 * 10 9 7 29 29 H 1.09000 * 113.53420 * 334.91895 * 10 9 7 30 30 H 1.09005 * 109.47208 * 50.00045 * 12 11 10 31 31 H 1.08999 * 109.46786 * 289.99823 * 12 11 10 32 32 H 0.96700 * 114.00311 * 60.00313 * 15 13 12 33 33 H 1.09000 * 109.47014 * 295.00359 * 16 13 12 34 34 H 1.08997 * 109.46686 * 54.99986 * 16 13 12 35 35 H 1.08996 * 109.47314 * 299.99907 * 18 17 16 36 36 H 1.09001 * 109.46870 * 59.99849 * 18 17 16 37 37 H 1.08001 * 119.99834 * 359.97438 * 20 19 18 38 38 H 1.08003 * 120.00476 * 180.25144 * 21 20 19 39 39 H 1.07992 * 120.00185 * 179.77104 * 22 21 20 40 40 H 1.08000 * 120.00113 * 179.97438 * 23 22 21 41 41 H 1.08006 * 119.99938 * 0.02562 * 24 19 18 42 42 H 1.09005 * 113.47492 * 87.75450 * 25 11 10 43 43 H 1.08996 * 113.48106 * 218.22364 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5469 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.1496 -3.7438 -0.0028 11 7 1.2049 -4.3593 -0.9534 12 6 1.9205 -5.0884 -2.0090 13 6 0.9232 -5.9139 -2.8246 14 1 0.3560 -6.5620 -2.1567 15 8 0.0280 -5.0367 -3.5111 16 6 1.6808 -6.7685 -3.8428 17 8 0.7615 -7.6242 -4.5243 18 6 1.3701 -8.4697 -5.5024 19 6 0.3141 -9.3245 -6.1546 20 6 0.0017 -10.5621 -5.6237 21 6 -0.9703 -11.3441 -6.2190 22 6 -1.6229 -10.8929 -7.3511 23 6 -1.3064 -9.6578 -7.8852 24 6 -0.3380 -8.8736 -7.2868 25 6 0.8517 -2.9981 -1.3975 26 1 -0.4849 0.8401 0.0004 27 1 0.4446 -2.5312 0.7310 28 1 2.1889 -4.2518 0.9608 29 1 3.1382 -3.5664 -0.4263 30 1 2.6573 -5.7522 -1.5567 31 1 2.4249 -4.3777 -2.6635 32 1 0.4649 -4.4298 -4.1242 33 1 2.1765 -6.1194 -4.5647 34 1 2.4260 -7.3734 -3.3264 35 1 1.8597 -7.8563 -6.2588 36 1 2.1086 -9.1100 -5.0201 37 1 0.5146 -10.9165 -4.7418 38 1 -1.2173 -12.3092 -5.8020 39 1 -2.3796 -11.5055 -7.8184 40 1 -1.8158 -9.3055 -8.7699 41 1 -0.0905 -7.9087 -7.7044 42 1 1.4936 -2.6208 -2.1936 43 1 -0.2089 -2.8741 -1.6160 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594716240.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:54 Heat of formation + Delta-G solvation = -37.107435 kcal Electronic energy + Delta-G solvation = -22198.881115 eV Core-core repulsion = 18824.116056 eV Total energy + Delta-G solvation = -3374.765060 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -39.65153 -39.19190 -37.97110 -36.21416 -32.71990 -32.30166 -31.15108 -30.94428 -28.25312 -26.26801 -25.09899 -24.71308 -22.83481 -22.63917 -21.64428 -21.02366 -18.59616 -17.19971 -17.12324 -16.56854 -16.33166 -16.03026 -15.51739 -15.35684 -14.84964 -14.62314 -14.41068 -13.89553 -13.80787 -13.65311 -13.38995 -12.97813 -12.69198 -12.26544 -12.20693 -11.89572 -11.68308 -11.32552 -11.27542 -11.20725 -11.00237 -10.66061 -10.62453 -10.28775 -10.11589 -9.78494 -9.48256 -9.19611 -9.16334 -9.05599 -8.91852 -8.42742 -7.96939 -6.04184 -4.09162 1.01302 1.15992 3.27165 3.28265 3.35650 3.38230 3.81119 4.39768 4.49568 4.54817 4.64176 4.74432 4.83467 4.92718 4.98215 5.07188 5.10926 5.22342 5.23484 5.30656 5.33496 5.39695 5.40990 5.57121 5.70973 5.78457 5.81616 6.04505 6.18760 6.24806 6.30856 6.34642 6.34691 6.49471 6.68168 6.72590 6.74118 7.03343 7.19720 7.25927 7.73421 7.92273 7.94765 8.09214 8.38372 8.93930 9.55607 11.05257 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036529 B = 0.002331 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.320557 B =12007.601058 C =12268.575788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.066 3.934 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.039 3.961 10 C -0.007 4.007 11 N -0.476 5.476 12 C -0.008 4.008 13 C 0.122 3.878 14 H 0.109 0.891 15 O -0.542 6.542 16 C 0.030 3.970 17 O -0.368 6.368 18 C 0.100 3.900 19 C -0.088 4.088 20 C -0.099 4.099 21 C -0.124 4.124 22 C -0.117 4.117 23 C -0.124 4.124 24 C -0.097 4.097 25 C 0.014 3.986 26 H 0.262 0.738 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.366 0.634 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.049 0.951 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.384 -20.069 -14.514 24.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.137 4.137 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.075 0.925 9 C 0.020 3.980 10 C -0.136 4.136 11 N -0.198 5.198 12 C -0.138 4.138 13 C 0.062 3.938 14 H 0.126 0.874 15 O -0.346 6.346 16 C -0.047 4.047 17 O -0.288 6.288 18 C 0.024 3.976 19 C -0.088 4.088 20 C -0.117 4.117 21 C -0.142 4.142 22 C -0.135 4.135 23 C -0.142 4.142 24 C -0.115 4.115 25 C -0.115 4.115 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.212 0.788 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.067 0.933 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.074 -20.768 -13.903 25.015 hybrid contribution 1.936 1.611 -0.868 2.664 sum 3.011 -19.158 -14.770 24.377 Atomic orbital electron populations 1.69980 1.05959 1.26736 1.49452 1.25030 0.94828 0.99147 0.94668 0.86622 0.79908 0.83519 0.78094 1.20688 1.21125 1.19877 1.21018 0.92653 0.90300 1.51582 0.92534 1.20117 0.94239 0.90706 0.92915 1.24042 0.95693 0.97906 0.95976 1.68809 1.26585 1.14670 1.09777 1.23229 0.95997 0.98573 0.95966 1.21849 0.91197 0.89794 0.90976 0.87357 1.86681 1.35997 1.51853 1.60064 1.23360 0.92733 0.93222 0.95411 1.88066 1.34007 1.53462 1.53218 1.21310 0.93188 0.92028 0.91111 1.19620 0.98545 0.94768 0.95857 1.21079 0.97458 0.94056 0.99129 1.21149 0.96733 1.00027 0.96335 1.21201 0.99558 0.96337 0.96365 1.21161 0.97940 0.94784 1.00309 1.21091 0.95684 0.99336 0.95435 1.24028 1.00534 0.86140 1.00764 0.92837 0.91816 0.92027 0.93005 0.91151 0.93862 0.78768 0.93165 0.92566 0.92596 0.92618 0.85940 0.85924 0.86048 0.85896 0.85896 0.93272 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.71 13.26 55.43 0.74 -24.97 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -14.08 8.83 -34.44 -0.30 -14.39 16 8 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 9 C 0.04 0.99 3.76 -91.24 -0.34 0.65 16 10 C -0.01 -0.16 7.24 -7.56 -0.05 -0.21 16 11 N -0.48 -9.67 6.31 -244.66 -1.54 -11.21 16 12 C -0.01 -0.13 4.53 -3.82 -0.02 -0.14 16 13 C 0.12 1.83 3.49 -26.73 -0.09 1.73 16 14 H 0.11 1.79 8.14 -51.93 -0.42 1.36 16 15 O -0.54 -9.14 12.64 -40.08 -0.51 -9.65 16 16 C 0.03 0.36 5.57 37.16 0.21 0.57 16 17 O -0.37 -4.92 10.29 -40.08 -0.41 -5.33 16 18 C 0.10 1.02 6.06 36.01 0.22 1.24 16 19 C -0.09 -0.93 5.51 -104.62 -0.58 -1.51 16 20 C -0.10 -0.97 9.70 -39.59 -0.38 -1.35 16 21 C -0.12 -1.08 10.05 -39.59 -0.40 -1.48 16 22 C -0.12 -0.98 10.05 -39.58 -0.40 -1.37 16 23 C -0.12 -1.10 10.05 -39.58 -0.40 -1.49 16 24 C -0.10 -0.97 9.70 -39.59 -0.38 -1.35 16 25 C 0.01 0.33 6.66 -7.55 -0.05 0.28 16 26 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 27 H 0.06 1.78 8.11 -51.93 -0.42 1.36 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.05 1.05 7.87 -51.93 -0.41 0.64 16 30 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 31 H 0.04 0.68 7.30 -51.93 -0.38 0.30 16 32 H 0.37 5.02 9.05 45.56 0.41 5.43 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 36 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 37 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 40 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 41 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 42 H 0.05 1.12 7.38 -51.93 -0.38 0.73 16 43 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 361.10 15.07 5.44 5.44 Total: -1.00 -31.42 361.10 -10.59 -42.01 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.21 Total: 4.80 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -3.07 Total: -17.10 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: -0.81 Total: -36.19 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.92 Total: -14.98 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.42 -10.59 -42.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594716240.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.906 kcal (2) G-P(sol) polarization free energy of solvation -31.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds