Wall clock time and date at job start Tue Mar 31 2020 08:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00094 * 2 1 4 4 H 1.48501 * 109.47081 * 269.99869 * 3 2 1 5 5 H 1.48497 * 109.47099 * 30.00088 * 3 2 1 6 6 H 1.48507 * 109.47204 * 150.00192 * 3 2 1 7 7 C 1.37874 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00078 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99989 * 0.02562 * 7 2 1 10 10 C 1.53510 * 114.16738 * 179.97438 * 9 7 2 11 11 N 1.47473 * 87.93064 * 220.13759 * 10 9 7 12 12 C 1.46900 * 110.99932 * 138.70888 * 11 10 9 13 13 C 1.53003 * 109.47407 * 169.99733 * 12 11 10 14 14 H 1.08999 * 109.47269 * 305.00036 * 13 12 11 15 15 O 1.42903 * 109.46459 * 64.99929 * 13 12 11 16 16 C 1.53001 * 109.47376 * 184.99739 * 13 12 11 17 17 O 1.42897 * 109.47164 * 175.00429 * 16 13 12 18 18 C 1.42893 * 114.00118 * 180.02562 * 17 16 13 19 19 C 1.50705 * 109.47282 * 179.97438 * 18 17 16 20 20 C 1.38240 * 119.99975 * 269.72816 * 19 18 17 21 21 C 1.38224 * 119.99898 * 179.76584 * 20 19 18 22 22 C 1.38239 * 120.00321 * 0.48589 * 21 20 19 23 23 C 1.38237 * 119.99493 * 359.78773 * 22 21 20 24 24 C 1.38228 * 120.00029 * 90.00245 * 19 18 17 25 25 C 1.47476 * 87.83857 * 27.01345 * 11 10 9 26 26 H 0.97005 * 119.99423 * 359.97438 * 1 2 3 27 27 H 1.08996 * 113.25252 * 312.94544 * 9 7 2 28 28 H 1.09003 * 113.47478 * 105.37270 * 10 9 7 29 29 H 1.09000 * 113.53420 * 334.91895 * 10 9 7 30 30 H 1.09005 * 109.47208 * 50.00045 * 12 11 10 31 31 H 1.08999 * 109.46786 * 289.99823 * 12 11 10 32 32 H 0.96700 * 114.00311 * 60.00313 * 15 13 12 33 33 H 1.09000 * 109.47014 * 295.00359 * 16 13 12 34 34 H 1.08997 * 109.46686 * 54.99986 * 16 13 12 35 35 H 1.08996 * 109.47314 * 299.99907 * 18 17 16 36 36 H 1.09001 * 109.46870 * 59.99849 * 18 17 16 37 37 H 1.08001 * 119.99834 * 359.97438 * 20 19 18 38 38 H 1.08003 * 120.00476 * 180.25144 * 21 20 19 39 39 H 1.07992 * 120.00185 * 179.77104 * 22 21 20 40 40 H 1.08000 * 120.00113 * 179.97438 * 23 22 21 41 41 H 1.08006 * 119.99938 * 0.02562 * 24 19 18 42 42 H 1.09005 * 113.47492 * 87.75450 * 25 11 10 43 43 H 1.08996 * 113.48106 * 218.22364 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5469 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.1496 -3.7438 -0.0028 11 7 1.2049 -4.3593 -0.9534 12 6 1.9205 -5.0884 -2.0090 13 6 0.9232 -5.9139 -2.8246 14 1 0.3560 -6.5620 -2.1567 15 8 0.0280 -5.0367 -3.5111 16 6 1.6808 -6.7685 -3.8428 17 8 0.7615 -7.6242 -4.5243 18 6 1.3701 -8.4697 -5.5024 19 6 0.3141 -9.3245 -6.1546 20 6 0.0017 -10.5621 -5.6237 21 6 -0.9703 -11.3441 -6.2190 22 6 -1.6229 -10.8929 -7.3511 23 6 -1.3064 -9.6578 -7.8852 24 6 -0.3380 -8.8736 -7.2868 25 6 0.8517 -2.9981 -1.3975 26 1 -0.4849 0.8401 0.0004 27 1 0.4446 -2.5312 0.7310 28 1 2.1889 -4.2518 0.9608 29 1 3.1382 -3.5664 -0.4263 30 1 2.6573 -5.7522 -1.5567 31 1 2.4249 -4.3777 -2.6635 32 1 0.4649 -4.4298 -4.1242 33 1 2.1765 -6.1194 -4.5647 34 1 2.4260 -7.3734 -3.3264 35 1 1.8597 -7.8563 -6.2588 36 1 2.1086 -9.1100 -5.0201 37 1 0.5146 -10.9165 -4.7418 38 1 -1.2173 -12.3092 -5.8020 39 1 -2.3796 -11.5055 -7.8184 40 1 -1.8158 -9.3055 -8.7699 41 1 -0.0905 -7.9087 -7.7044 42 1 1.4936 -2.6208 -2.1936 43 1 -0.2089 -2.8741 -1.6160 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594716240.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:50 Heat of formation + Delta-G solvation = -59.548228 kcal Electronic energy + Delta-G solvation = -22199.854221 eV Core-core repulsion = 18824.116056 eV Total energy + Delta-G solvation = -3375.738166 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -40.86313 -40.28427 -39.02983 -37.39064 -34.72620 -33.12178 -32.28787 -31.80583 -29.72764 -27.45550 -26.50361 -26.43014 -24.12529 -23.49610 -22.57464 -22.09515 -20.45794 -18.76813 -17.91333 -17.81595 -17.52415 -16.95199 -16.67305 -16.50070 -16.25972 -16.03419 -15.64046 -15.42867 -15.01112 -14.52980 -14.27878 -14.02044 -13.87053 -13.64357 -13.43096 -13.18701 -13.06028 -12.92130 -12.85589 -12.41063 -12.19117 -11.93950 -11.92421 -11.85533 -11.65051 -11.18145 -10.89039 -10.81118 -10.62893 -10.47109 -9.83837 -9.77293 -9.63985 -8.14102 -6.26219 0.32289 0.48461 1.42935 1.43971 1.54646 2.41643 2.46812 2.98873 3.14926 3.42806 3.52271 3.82898 3.89930 4.03802 4.07635 4.10223 4.15197 4.25254 4.29526 4.32781 4.38343 4.42483 4.48650 4.53130 4.58452 4.64027 4.74698 4.75458 4.89626 4.98278 5.06391 5.07976 5.13955 5.31715 5.51662 5.53254 5.59370 5.62804 5.65241 5.85608 6.08060 6.18846 6.29806 6.42505 6.83891 6.84407 7.42458 8.95711 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036529 B = 0.002331 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.320557 B =12007.601058 C =12268.575788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.011 3.989 3 Si 0.960 3.040 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.529 4.529 8 H 0.062 0.938 9 C 0.015 3.985 10 C 0.010 3.990 11 N -0.483 5.483 12 C -0.006 4.006 13 C 0.124 3.876 14 H 0.088 0.912 15 O -0.569 6.569 16 C 0.039 3.961 17 O -0.397 6.397 18 C 0.099 3.901 19 C -0.110 4.110 20 C -0.114 4.114 21 C -0.132 4.132 22 C -0.122 4.122 23 C -0.133 4.133 24 C -0.115 4.115 25 C 0.031 3.969 26 H 0.262 0.738 27 H 0.024 0.976 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.053 0.947 32 H 0.378 0.622 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.131 0.869 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.141 0.859 41 H 0.127 0.873 42 H 0.053 0.947 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.138 -21.058 -15.576 26.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.567 4.567 8 H 0.080 0.920 9 C -0.004 4.004 10 C -0.119 4.119 11 N -0.205 5.205 12 C -0.135 4.135 13 C 0.064 3.936 14 H 0.106 0.894 15 O -0.375 6.375 16 C -0.038 4.038 17 O -0.317 6.317 18 C 0.023 3.977 19 C -0.110 4.110 20 C -0.132 4.132 21 C -0.150 4.150 22 C -0.140 4.140 23 C -0.151 4.151 24 C -0.133 4.133 25 C -0.099 4.099 26 H 0.071 0.929 27 H 0.042 0.958 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.071 0.929 32 H 0.226 0.774 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.149 0.851 38 H 0.161 0.839 39 H 0.163 0.837 40 H 0.159 0.841 41 H 0.145 0.855 42 H 0.071 0.929 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.852 -21.776 -14.973 26.580 hybrid contribution 1.338 1.823 -0.551 2.328 sum 4.190 -19.953 -15.524 25.625 Atomic orbital electron populations 1.70124 1.07677 1.27565 1.50866 1.25893 0.95605 1.02920 0.94402 0.85525 0.78719 0.78869 0.78349 1.19912 1.21161 1.18786 1.21370 0.93033 0.91300 1.50966 0.91977 1.20081 0.94530 0.92349 0.93404 1.23856 0.95511 0.95545 0.96982 1.68707 1.27498 1.13233 1.11052 1.23284 0.96370 0.98770 0.95105 1.21783 0.90697 0.89558 0.91525 0.89367 1.86640 1.37518 1.52662 1.60647 1.23217 0.92163 0.93307 0.95142 1.88016 1.35396 1.54160 1.54122 1.21449 0.93339 0.92013 0.90880 1.19836 0.99317 0.95386 0.96434 1.21322 0.98060 0.94168 0.99674 1.21480 0.96287 1.00803 0.96398 1.21557 0.99781 0.96413 0.96239 1.21471 0.97718 0.94990 1.00910 1.21310 0.96320 0.99923 0.95788 1.23702 0.98732 0.87998 0.99419 0.92908 0.95778 0.90897 0.91502 0.88494 0.92889 0.77433 0.91440 0.90343 0.91457 0.91064 0.85077 0.83887 0.83736 0.84104 0.85469 0.92853 0.94334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.08 13.26 21.45 0.28 -54.79 16 2 C 0.01 0.61 5.46 84.65 0.46 1.07 16 3 Si 0.96 43.12 29.54 68.60 2.03 45.15 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 7 C -0.53 -28.85 8.83 25.60 0.23 -28.62 16 8 H 0.06 3.24 7.81 -2.91 -0.02 3.22 16 9 C 0.02 0.80 3.76 -11.19 -0.04 0.76 16 10 C 0.01 0.40 7.24 83.57 0.61 1.00 16 11 N -0.48 -19.26 6.31 -927.98 -5.85 -25.12 16 12 C -0.01 -0.18 4.53 86.30 0.39 0.21 16 13 C 0.12 3.57 3.49 30.60 0.11 3.67 16 14 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 15 O -0.57 -19.06 12.64 -144.35 -1.82 -20.89 16 16 C 0.04 0.83 5.57 71.98 0.40 1.24 16 17 O -0.40 -10.08 10.29 -144.35 -1.49 -11.57 16 18 C 0.10 1.87 6.06 71.24 0.43 2.31 16 19 C -0.11 -2.24 5.51 -19.86 -0.11 -2.35 16 20 C -0.11 -2.12 9.70 22.27 0.22 -1.90 16 21 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 22 C -0.12 -1.85 10.05 22.27 0.22 -1.63 16 23 C -0.13 -2.21 10.05 22.27 0.22 -1.98 16 24 C -0.12 -2.23 9.70 22.27 0.22 -2.02 16 25 C 0.03 1.44 6.66 83.57 0.56 1.99 16 26 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 27 H 0.02 1.41 8.11 -2.39 -0.02 1.39 16 28 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.07 2.54 7.87 -2.39 -0.02 2.52 16 30 H 0.10 2.41 8.08 -2.38 -0.02 2.39 16 31 H 0.05 1.51 7.30 -2.39 -0.02 1.50 16 32 H 0.38 10.17 9.05 -74.06 -0.67 9.50 16 33 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.07 1.08 8.09 -2.39 -0.02 1.06 16 36 H 0.07 1.09 8.08 -2.39 -0.02 1.07 16 37 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 38 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 39 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 40 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 41 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 42 H 0.05 2.41 7.38 -2.38 -0.02 2.39 16 43 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -68.70 361.10 -2.41 -71.11 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.31 Total: 24.23 kcal Atomic # 6 Polarization: -32.26 SS G_CDS: 4.13 Total: -28.13 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -5.57 Total: -79.91 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -3.31 Total: -32.45 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -68.70 -2.41 -71.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594716240.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.559 kcal (2) G-P(sol) polarization free energy of solvation -68.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds