Wall clock time and date at job start Tue Mar 31 2020 08:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 119.99860 * 2 1 4 4 H 1.48503 * 109.47237 * 269.99993 * 3 2 1 5 5 H 1.48501 * 109.47250 * 29.99721 * 3 2 1 6 6 H 1.48503 * 109.47165 * 150.00287 * 3 2 1 7 7 C 1.37877 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00409 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99808 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46967 * 179.97438 * 9 7 2 11 11 N 1.46904 * 109.47013 * 180.02562 * 10 9 7 12 12 C 1.46889 * 111.00140 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47584 * 180.02562 * 12 11 10 14 14 C 1.38262 * 119.94294 * 89.99484 * 13 12 11 15 15 C 1.38146 * 120.05821 * 180.02562 * 14 13 12 16 16 C 1.38732 * 119.93975 * 0.02562 * 15 14 13 17 17 O 1.35908 * 120.05592 * 179.97438 * 16 15 14 18 18 C 1.42902 * 116.99297 * 354.35240 * 17 16 15 19 19 H 1.08991 * 110.83692 * 327.41047 * 18 17 16 20 20 C 1.54809 * 110.90200 * 203.75870 * 18 17 16 21 21 C 1.54103 * 104.18980 * 220.92326 * 20 18 17 22 22 O 1.43741 * 107.29141 * 357.97280 * 21 20 18 23 23 C 1.44377 * 106.97616 * 26.51299 * 22 21 20 24 24 C 1.38729 * 119.89042 * 0.27082 * 16 15 14 25 25 C 1.38147 * 119.94160 * 359.46787 * 24 16 15 26 26 H 0.97001 * 119.99748 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.46339 * 60.00521 * 9 7 2 28 28 H 1.08998 * 109.47574 * 300.00923 * 9 7 2 29 29 H 1.08998 * 109.46548 * 60.00887 * 10 9 7 30 30 H 1.08993 * 109.47560 * 300.00222 * 10 9 7 31 31 H 1.00897 * 111.00118 * 303.96316 * 11 10 9 32 32 H 1.09001 * 109.47466 * 60.00282 * 12 11 10 33 33 H 1.08999 * 109.47439 * 300.00180 * 12 11 10 34 34 H 1.08003 * 119.97351 * 0.03681 * 14 13 12 35 35 H 1.07999 * 120.02958 * 180.02562 * 15 14 13 36 36 H 1.09002 * 110.48904 * 102.24981 * 20 18 17 37 37 H 1.09001 * 110.49047 * 339.60068 * 20 18 17 38 38 H 1.08997 * 109.87694 * 117.39769 * 21 20 18 39 39 H 1.08994 * 109.87744 * 238.39779 * 21 20 18 40 40 H 1.08999 * 110.62085 * 78.43604 * 23 22 21 41 41 H 1.09006 * 110.62189 * 201.27861 * 23 22 21 42 42 H 1.08004 * 120.03051 * 179.72590 * 24 16 15 43 43 H 1.08002 * 119.97226 * 180.27397 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0014 11 7 5.4906 -2.6366 0.0014 12 6 6.0171 -4.0079 0.0021 13 6 7.5235 -3.9677 0.0028 14 6 8.2129 -3.9488 1.2012 15 6 9.5938 -3.9115 1.2046 16 6 10.2889 -3.8925 0.0041 17 8 11.6475 -3.8553 0.0047 18 6 12.2919 -3.7122 1.2721 19 1 11.6861 -3.1103 1.9493 20 6 13.7059 -3.1041 1.1073 21 6 14.5782 -3.9031 2.0949 22 8 13.7143 -4.8278 2.7765 23 6 12.6046 -5.0975 1.8931 24 6 9.5948 -3.9053 -1.1970 25 6 8.2140 -3.9481 -1.1949 26 1 -0.4850 0.8401 -0.0004 27 1 3.8752 -0.6796 0.8896 28 1 3.8747 -0.6807 -0.8904 29 1 3.6580 -3.1512 -0.8880 30 1 3.6586 -3.1494 0.8920 31 1 5.8523 -2.1111 -0.7803 32 1 5.6677 -4.5317 -0.8876 33 1 5.6676 -4.5308 0.8923 34 1 7.6713 -3.9634 2.1355 35 1 10.1318 -3.8972 2.1409 36 1 13.6999 -2.0469 1.3727 37 1 14.0632 -3.2401 0.0865 38 1 15.3494 -4.4484 1.5509 39 1 15.0402 -3.2258 2.8131 40 1 12.8940 -5.8084 1.1192 41 1 11.7485 -5.4710 2.4550 42 1 10.1335 -3.8861 -2.1328 43 1 7.6732 -3.9626 -2.1297 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594941941.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:48 Heat of formation + Delta-G solvation = -82.292989 kcal Electronic energy + Delta-G solvation = -21991.403570 eV Core-core repulsion = 18614.679118 eV Total energy + Delta-G solvation = -3376.724452 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.54329 -40.09773 -38.60338 -37.13881 -34.99256 -33.09293 -32.37628 -31.95247 -30.47160 -29.81542 -26.85106 -24.88969 -24.20763 -23.76982 -22.56144 -22.21503 -21.55695 -19.52671 -18.95387 -17.79556 -17.18692 -17.02997 -16.58531 -16.37120 -16.15878 -16.12534 -15.52552 -15.34353 -15.19192 -14.81102 -14.51601 -14.41710 -14.29057 -14.19293 -13.62480 -13.33807 -13.10814 -12.97846 -12.85510 -12.54645 -12.43377 -12.13299 -11.90512 -11.80239 -11.71978 -11.58150 -11.49083 -11.41944 -10.78850 -10.76748 -9.95617 -9.37539 -9.06060 -8.29830 -6.34320 0.36711 0.41978 1.36741 1.39371 1.52516 1.97634 2.36989 2.71548 2.97967 3.05651 3.35207 3.50472 3.65209 3.74650 3.85919 3.94149 3.97109 4.12318 4.14539 4.27050 4.40851 4.45536 4.49181 4.56178 4.60393 4.66473 4.77137 4.77679 4.78943 4.87410 4.96691 4.96986 5.10139 5.27368 5.30555 5.37290 5.49230 5.63550 5.66625 5.70918 5.81680 6.12629 6.25412 6.39760 6.51948 6.74323 7.30560 8.86685 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028565 B = 0.002341 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.000558 B =11958.195625 C =12321.471731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.004 3.996 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.249 1.249 7 C -0.533 4.533 8 H 0.033 0.967 9 C -0.005 4.005 10 C 0.086 3.914 11 N -0.690 5.690 12 C 0.102 3.898 13 C -0.121 4.121 14 C -0.066 4.066 15 C -0.210 4.210 16 C 0.114 3.886 17 O -0.308 6.308 18 C 0.044 3.956 19 H 0.097 0.903 20 C -0.149 4.149 21 C 0.044 3.956 22 O -0.391 6.391 23 C 0.028 3.972 24 C -0.157 4.157 25 C -0.076 4.076 26 H 0.267 0.733 27 H 0.022 0.978 28 H 0.018 0.982 29 H 0.020 0.980 30 H 0.057 0.943 31 H 0.341 0.659 32 H 0.042 0.958 33 H 0.077 0.923 34 H 0.131 0.869 35 H 0.142 0.858 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.105 0.895 40 H 0.073 0.927 41 H 0.104 0.896 42 H 0.142 0.858 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.872 -8.929 1.011 33.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.172 1.172 7 C -0.572 4.572 8 H 0.051 0.949 9 C -0.042 4.042 10 C -0.043 4.043 11 N -0.321 5.321 12 C -0.026 4.026 13 C -0.122 4.122 14 C -0.085 4.085 15 C -0.228 4.228 16 C 0.070 3.930 17 O -0.223 6.223 18 C -0.012 4.012 19 H 0.114 0.886 20 C -0.187 4.187 21 C -0.032 4.032 22 O -0.311 6.311 23 C -0.049 4.049 24 C -0.175 4.175 25 C -0.095 4.095 26 H 0.075 0.925 27 H 0.040 0.960 28 H 0.036 0.964 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.159 0.841 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.149 0.851 35 H 0.160 0.840 36 H 0.120 0.880 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.123 0.877 40 H 0.091 0.909 41 H 0.122 0.878 42 H 0.160 0.840 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 31.946 -8.867 1.751 33.200 hybrid contribution -0.748 0.447 -0.915 1.264 sum 31.198 -8.419 0.835 32.325 Atomic orbital electron populations 1.70070 1.08265 1.28207 1.52546 1.26018 0.95656 1.03598 0.94053 0.85594 0.79393 0.78051 0.79195 1.19069 1.20991 1.17217 1.21416 0.91946 0.93224 1.50598 0.94884 1.19438 0.93510 0.94560 0.96734 1.21649 0.86123 0.97336 0.99158 1.60568 1.07394 1.13961 1.50224 1.20823 0.90457 0.89846 1.01503 1.19775 0.94935 1.03821 0.93678 1.21004 0.93408 0.95824 0.98246 1.21394 0.95168 1.08724 0.97528 1.19135 0.82265 0.97079 0.94569 1.86089 1.16515 1.87829 1.31822 1.24153 0.95083 0.97615 0.84377 0.88565 1.23013 0.91766 1.01698 1.02221 1.23341 0.92910 0.91538 0.95452 1.88905 1.36172 1.64968 1.41041 1.24066 0.90406 0.96301 0.94160 1.20568 0.93714 1.06496 0.96741 1.21062 0.93216 0.97004 0.98195 0.92453 0.96012 0.96370 0.96208 0.92403 0.84078 0.93965 0.90430 0.85074 0.84005 0.88013 0.88717 0.90803 0.87699 0.90918 0.87821 0.84019 0.84180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.09 13.96 21.45 0.30 -59.79 16 2 C 0.00 0.21 5.47 84.65 0.46 0.68 16 3 Si 0.95 44.92 27.47 68.60 1.88 46.80 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 7 C -0.53 -31.14 9.66 25.60 0.25 -30.90 16 8 H 0.03 2.11 7.99 -2.91 -0.02 2.08 16 9 C 0.00 -0.22 4.30 29.85 0.13 -0.09 16 10 C 0.09 3.41 5.62 86.30 0.49 3.89 16 11 N -0.69 -22.14 6.49 -517.96 -3.36 -25.50 16 12 C 0.10 2.66 5.81 85.56 0.50 3.15 16 13 C -0.12 -2.82 5.39 -19.85 -0.11 -2.93 16 14 C -0.07 -1.46 9.69 22.25 0.22 -1.24 16 15 C -0.21 -4.11 8.93 22.37 0.20 -3.91 16 16 C 0.11 2.32 6.68 22.51 0.15 2.47 16 17 O -0.31 -5.69 9.90 -92.51 -0.92 -6.61 16 18 C 0.04 0.63 2.90 31.90 0.09 0.72 16 19 H 0.10 1.33 6.25 -2.39 -0.01 1.31 16 20 C -0.15 -1.52 6.78 31.59 0.21 -1.31 16 21 C 0.04 0.44 7.70 72.36 0.56 1.00 16 22 O -0.39 -6.36 11.52 -148.98 -1.72 -8.08 16 23 C 0.03 0.40 7.31 72.67 0.53 0.93 16 24 C -0.16 -3.13 9.99 22.37 0.22 -2.90 16 25 C -0.08 -1.58 9.69 22.25 0.22 -1.37 16 26 H 0.27 15.69 8.31 -92.71 -0.77 14.91 16 27 H 0.02 1.04 7.20 -2.38 -0.02 1.03 16 28 H 0.02 0.82 7.57 -2.39 -0.02 0.81 16 29 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.34 10.34 8.72 -89.70 -0.78 9.56 16 32 H 0.04 1.04 8.09 -2.39 -0.02 1.02 16 33 H 0.08 2.00 8.08 -2.39 -0.02 1.98 16 34 H 0.13 2.71 8.06 -2.91 -0.02 2.69 16 35 H 0.14 2.23 5.63 -2.91 -0.02 2.22 16 36 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.09 0.93 8.08 -2.39 -0.02 0.91 16 38 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.10 1.36 7.78 -2.38 -0.02 1.34 16 42 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 43 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -68.61 352.74 0.46 -68.15 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.16 Total: 16.84 kcal Atomic # 6 Polarization: -35.93 SS G_CDS: 4.11 Total: -31.81 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -3.06 Total: -85.29 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -2.63 Total: -14.69 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.88 Total: 46.80 kcal Total: -68.61 0.46 -68.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594941941.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.142 kcal (2) G-P(sol) polarization free energy of solvation -68.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds