Wall clock time and date at job start Tue Mar 31 2020 08:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00302 * 2 1 4 4 H 1.48507 * 109.47222 * 270.00392 * 3 2 1 5 5 H 1.48507 * 109.47116 * 29.99808 * 3 2 1 6 6 H 1.48495 * 109.47556 * 150.00112 * 3 2 1 7 7 C 1.37874 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00063 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00153 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47384 * 179.97438 * 9 7 2 11 11 O 1.42894 * 109.47389 * 180.02562 * 10 9 7 12 12 C 1.35895 * 117.00111 * 180.02562 * 11 10 9 13 13 C 1.38757 * 120.05832 * 359.72745 * 12 11 10 14 14 C 1.38122 * 119.94782 * 179.74426 * 13 12 11 15 15 C 1.38295 * 120.05145 * 0.50828 * 14 13 12 16 16 C 1.38239 * 120.11108 * 359.76961 * 15 14 13 17 17 C 1.50701 * 119.97059 * 179.97438 * 16 15 14 18 18 N 1.46900 * 109.47285 * 270.01968 * 17 16 15 19 19 C 1.46893 * 111.00037 * 179.97438 * 18 17 16 20 20 C 1.50704 * 109.47026 * 179.97438 * 19 18 17 21 21 C 1.30998 * 119.99784 * 126.61089 * 20 19 18 22 22 C 1.50698 * 120.00129 * 6.93241 * 21 20 19 23 23 O 1.42898 * 109.47410 * 135.96647 * 22 21 20 24 24 C 1.38165 * 120.05790 * 359.97226 * 16 15 14 25 25 H 0.96994 * 119.99678 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.46821 * 60.00340 * 9 7 2 27 27 H 1.08999 * 109.47341 * 300.00271 * 9 7 2 28 28 H 1.09007 * 109.46948 * 60.00079 * 10 9 7 29 29 H 1.08999 * 109.47346 * 300.00566 * 10 9 7 30 30 H 1.07998 * 120.02428 * 359.97438 * 13 12 11 31 31 H 1.08000 * 119.97675 * 180.25529 * 14 13 12 32 32 H 1.07995 * 119.93864 * 179.74983 * 15 14 13 33 33 H 1.09009 * 109.47031 * 30.01917 * 17 16 15 34 34 H 1.08996 * 109.47221 * 150.01577 * 17 16 15 35 35 H 1.00895 * 110.99743 * 303.95653 * 18 17 16 36 36 H 1.09001 * 109.47549 * 300.00153 * 19 18 17 37 37 H 1.09001 * 109.47435 * 60.00648 * 19 18 17 38 38 H 1.08002 * 120.00002 * 306.61171 * 20 19 18 39 39 H 1.07998 * 120.00047 * 186.92951 * 21 20 19 40 40 H 1.09008 * 109.47251 * 255.96067 * 22 21 20 41 41 H 1.08993 * 109.47352 * 15.96235 * 22 21 20 42 42 H 0.96704 * 114.00612 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.02651 * 180.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 8 5.4505 -2.6367 -0.0009 12 6 6.0674 -3.8475 -0.0014 13 6 5.3128 -5.0120 0.0039 14 6 5.9422 -6.2415 -0.0019 15 6 7.3234 -6.3125 -0.0023 16 6 8.0774 -5.1538 -0.0017 17 6 9.5822 -5.2349 -0.0016 18 7 10.0710 -5.2623 1.3834 19 6 11.5372 -5.3420 1.4227 20 6 12.0007 -5.3674 2.8565 21 6 12.7955 -6.3226 3.2711 22 6 13.3716 -7.3050 2.2841 23 8 14.7580 -7.5061 2.5661 24 6 7.4525 -3.9215 -0.0013 25 1 -0.4849 0.8400 -0.0004 26 1 3.8752 -0.6805 0.8889 27 1 3.8746 -0.6800 -0.8911 28 1 3.6578 -3.1506 -0.8908 29 1 3.6585 -3.1503 0.8892 30 1 4.2343 -4.9570 0.0087 31 1 5.3554 -7.1481 -0.0020 32 1 7.8136 -7.2748 -0.0028 33 1 9.8972 -6.1428 -0.5161 34 1 9.9929 -4.3654 -0.5148 35 1 9.7380 -4.4623 1.9002 36 1 11.8655 -6.2507 0.9182 37 1 11.9620 -4.4734 0.9194 38 1 11.6775 -4.5981 3.5422 39 1 13.0379 -6.4062 4.3202 40 1 12.8428 -8.2547 2.3659 41 1 13.2596 -6.9126 1.2734 42 1 15.1949 -8.1280 1.9682 43 1 8.0421 -3.0167 -0.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594974482.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:26 Heat of formation + Delta-G solvation = -49.371886 kcal Electronic energy + Delta-G solvation = -21440.126950 eV Core-core repulsion = 18064.830064 eV Total energy + Delta-G solvation = -3375.296886 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -39.91995 -38.25562 -37.56564 -36.33208 -34.02107 -33.35130 -31.23463 -30.96466 -29.43007 -27.33517 -25.75944 -25.09484 -23.85894 -22.34505 -21.48099 -20.20918 -19.12465 -18.03252 -17.70042 -16.70722 -16.24164 -16.10555 -15.70843 -15.48020 -15.35532 -15.15238 -14.64321 -14.32805 -14.13306 -13.56578 -13.34290 -13.18368 -12.92173 -12.78508 -12.57003 -12.40518 -12.13458 -11.61855 -11.44983 -11.42595 -11.16761 -10.83753 -10.67313 -10.59610 -10.20839 -10.01479 -9.84030 -9.59336 -9.36847 -8.87073 -8.64796 -8.62896 -7.92659 -6.15633 -4.16682 1.33718 1.61201 1.71670 3.26571 3.33963 3.39179 3.67385 3.78066 3.93802 4.22597 4.36959 4.39819 4.69165 4.70233 4.80790 4.90483 4.97920 5.03260 5.10246 5.18421 5.23144 5.25337 5.38002 5.43324 5.51303 5.57610 5.75233 5.89565 5.93327 6.10115 6.15006 6.32540 6.38957 6.47142 6.58378 6.60290 6.67344 6.86114 7.02726 7.08395 7.15127 7.20427 7.60160 7.88925 8.36499 8.84971 9.44567 10.96868 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028093 B = 0.002188 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.451783 B =12791.693925 C =13471.486861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.072 3.928 11 O -0.320 6.320 12 C 0.144 3.856 13 C -0.208 4.208 14 C -0.081 4.081 15 C -0.147 4.147 16 C -0.053 4.053 17 C 0.102 3.898 18 N -0.680 5.680 19 C 0.074 3.926 20 C -0.138 4.138 21 C -0.151 4.151 22 C 0.098 3.902 23 O -0.572 6.572 24 C -0.156 4.156 25 H 0.266 0.734 26 H 0.027 0.973 27 H 0.023 0.977 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.131 0.869 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.081 0.919 34 H 0.041 0.959 35 H 0.347 0.653 36 H 0.083 0.917 37 H 0.040 0.960 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.381 0.619 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.241 -15.047 1.400 29.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.046 4.046 10 C -0.002 4.002 11 O -0.234 6.234 12 C 0.097 3.903 13 C -0.227 4.227 14 C -0.099 4.099 15 C -0.166 4.166 16 C -0.053 4.053 17 C -0.026 4.026 18 N -0.311 5.311 19 C -0.054 4.054 20 C -0.156 4.156 21 C -0.171 4.171 22 C 0.021 3.979 23 O -0.378 6.378 24 C -0.175 4.175 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.149 0.851 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.099 0.901 34 H 0.059 0.941 35 H 0.165 0.835 36 H 0.101 0.899 37 H 0.058 0.942 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.228 0.772 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 24.927 -14.965 1.933 29.138 hybrid contribution 0.281 1.248 -0.636 1.428 sum 25.208 -13.717 1.297 28.728 Atomic orbital electron populations 1.69893 1.06264 1.27226 1.50131 1.24934 0.94768 0.99206 0.94099 0.86756 0.80444 0.83289 0.78757 1.20063 1.21148 1.18783 1.20841 0.88331 0.94953 1.52413 0.90735 1.19585 0.96928 0.90242 0.97869 1.23081 0.74615 1.01941 1.00523 1.86113 1.24042 1.25945 1.87282 1.19093 0.92144 0.85198 0.93858 1.21428 1.00775 0.92398 1.08070 1.20923 0.94484 0.96974 0.97507 1.20775 0.93512 0.97598 1.04674 1.19357 0.94362 0.92468 0.99127 1.20852 0.90931 1.01339 0.89516 1.60523 1.08181 1.49155 1.13236 1.21190 0.88227 1.01428 0.94546 1.22711 0.98417 0.97537 0.96936 1.22515 0.99127 0.95665 0.99747 1.21274 0.81831 0.97798 0.97019 1.86494 1.22874 1.68325 1.60113 1.20253 0.91751 0.97701 1.07819 0.92432 0.95424 0.95864 0.92519 0.92475 0.85105 0.86025 0.86313 0.90078 0.94120 0.83475 0.89934 0.94187 0.86465 0.86458 0.92663 0.92428 0.77250 0.85829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 21.51 27.47 -169.99 -4.67 16.85 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.53 -14.83 9.66 -34.44 -0.33 -15.16 16 8 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 9 C -0.01 -0.21 4.41 -27.88 -0.12 -0.34 16 10 C 0.07 1.48 4.68 37.16 0.17 1.66 16 11 O -0.32 -6.21 10.14 -19.41 -0.20 -6.41 16 12 C 0.14 2.38 6.69 -39.22 -0.26 2.12 16 13 C -0.21 -3.14 9.04 -39.43 -0.36 -3.50 16 14 C -0.08 -1.02 10.04 -39.60 -0.40 -1.42 16 15 C -0.15 -1.73 9.70 -39.56 -0.38 -2.11 16 16 C -0.05 -0.62 5.39 -104.65 -0.56 -1.19 16 17 C 0.10 0.93 5.81 -4.98 -0.03 0.90 16 18 N -0.68 -6.08 6.48 -116.34 -0.75 -6.83 16 19 C 0.07 0.55 5.73 -4.98 -0.03 0.52 16 20 C -0.14 -1.05 9.77 -36.02 -0.35 -1.40 16 21 C -0.15 -1.18 9.89 -36.03 -0.36 -1.54 16 22 C 0.10 0.65 6.92 36.00 0.25 0.90 16 23 O -0.57 -4.15 13.64 -35.23 -0.48 -4.63 16 24 C -0.16 -2.19 9.64 -39.43 -0.38 -2.57 16 25 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 27 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16 28 H 0.06 1.12 7.67 -51.93 -0.40 0.72 16 29 H 0.06 1.13 7.65 -51.93 -0.40 0.74 16 30 H 0.13 1.97 6.30 -52.49 -0.33 1.64 16 31 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 32 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.08 0.65 8.09 -51.92 -0.42 0.23 16 34 H 0.04 0.35 8.08 -51.93 -0.42 -0.07 16 35 H 0.35 3.15 8.71 -39.29 -0.34 2.81 16 36 H 0.08 0.55 5.42 -51.93 -0.28 0.27 16 37 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 41 H 0.06 0.32 5.64 -51.93 -0.29 0.03 16 42 H 0.38 0.94 9.12 45.56 0.42 1.36 16 43 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 359.60 15.07 5.42 5.42 Total: -1.00 -32.19 359.60 -8.93 -41.12 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -5.78 Total: 2.03 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -3.24 Total: -21.15 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.02 Total: -33.23 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -0.68 Total: -11.04 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.19 -8.93 -41.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594974482.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.250 kcal (2) G-P(sol) polarization free energy of solvation -32.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds