Wall clock time and date at job start Tue Mar 31 2020 08:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35900 * 117.00172 * 179.97438 * 11 10 9 13 13 C 1.38746 * 120.05467 * 359.72752 * 12 11 10 14 14 C 1.38129 * 119.94586 * 179.74253 * 13 12 11 15 15 C 1.38288 * 120.05279 * 0.50650 * 14 13 12 16 16 C 1.38250 * 120.10917 * 359.76642 * 15 14 13 17 17 C 1.50704 * 119.96871 * 179.97438 * 16 15 14 18 18 N 1.46898 * 109.47159 * 270.02290 * 17 16 15 19 19 C 1.46900 * 111.00021 * 180.02562 * 18 17 16 20 20 C 1.50695 * 109.47116 * 180.02562 * 19 18 17 21 21 C 1.30999 * 120.00317 * 125.00489 * 20 19 18 22 22 C 1.50701 * 119.99833 * 180.02562 * 21 20 19 23 23 O 1.42904 * 109.46979 * 134.99662 * 22 21 20 24 24 C 1.38162 * 120.05723 * 359.97438 * 16 15 14 25 25 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 27 27 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 28 28 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 29 29 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 30 30 H 1.08010 * 120.02919 * 359.97292 * 13 12 11 31 31 H 1.07992 * 119.97408 * 180.25091 * 14 13 12 32 32 H 1.07997 * 119.94352 * 179.74725 * 15 14 13 33 33 H 1.09003 * 109.46632 * 30.02434 * 17 16 15 34 34 H 1.08996 * 109.46429 * 150.02007 * 17 16 15 35 35 H 1.00903 * 110.99590 * 56.04543 * 18 17 16 36 36 H 1.09008 * 109.46830 * 300.00052 * 19 18 17 37 37 H 1.08997 * 109.46985 * 59.99504 * 19 18 17 38 38 H 1.08005 * 119.99939 * 304.99467 * 20 19 18 39 39 H 1.08005 * 119.99744 * 359.97438 * 21 20 19 40 40 H 1.08998 * 109.46746 * 254.99056 * 22 21 20 41 41 H 1.08997 * 109.47487 * 14.99271 * 22 21 20 42 42 H 0.96698 * 113.99598 * 179.97438 * 23 22 21 43 43 H 1.07998 * 120.02891 * 180.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.2707 -6.0394 -0.0007 13 6 3.6563 -5.9682 -0.0064 14 6 4.4064 -7.1281 -0.0017 15 6 3.7773 -8.3596 -0.0018 16 6 2.3968 -8.4332 -0.0018 17 6 1.7145 -9.7770 -0.0025 18 7 1.4933 -10.2131 -1.3877 19 6 0.8280 -11.5222 -1.4275 20 6 0.6189 -11.9360 -2.8614 21 6 1.0757 -13.0888 -3.2838 22 6 0.8670 -13.5021 -4.7179 23 8 2.0847 -14.0358 -5.2418 24 6 1.6421 -7.2759 -0.0011 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5566 0.8902 28 1 2.8718 -3.6044 0.8905 29 1 2.8718 -3.6044 -0.8895 30 1 4.1481 -5.0066 -0.0109 31 1 5.4849 -7.0732 -0.0020 32 1 4.3655 -9.2654 -0.0022 33 1 2.3435 -10.5040 0.5114 34 1 0.7564 -9.6981 0.5111 35 1 2.3602 -10.2318 -1.9036 36 1 1.4505 -12.2616 -0.9234 37 1 -0.1363 -11.4551 -0.9239 38 1 0.0922 -11.2821 -3.5408 39 1 1.6025 -13.7425 -2.6045 40 1 0.0867 -14.2616 -4.7672 41 1 0.5675 -12.6348 -5.3062 42 1 2.0238 -14.3234 -6.1631 43 1 0.5637 -7.3340 -0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594974483.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:31 Heat of formation + Delta-G solvation = -59.320367 kcal Electronic energy + Delta-G solvation = -21249.313572 eV Core-core repulsion = 17873.585287 eV Total energy + Delta-G solvation = -3375.728285 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.80679 -37.97868 -37.48455 -36.34794 -33.92996 -33.34836 -31.20066 -30.69957 -29.16298 -27.83769 -25.42822 -24.70132 -23.04985 -22.34198 -21.61015 -20.28194 -19.93721 -17.80402 -17.55729 -16.50905 -16.15539 -15.70644 -15.57074 -15.34207 -15.31229 -15.01362 -14.65168 -14.52275 -14.06361 -13.71517 -13.08164 -12.82729 -12.73372 -12.64082 -12.34330 -12.30211 -11.98131 -11.51932 -11.38378 -11.26761 -11.17779 -10.87078 -10.75428 -10.69292 -10.42380 -9.84818 -9.64931 -9.52990 -9.29109 -8.80981 -8.61010 -8.44090 -7.82691 -6.09588 -4.14199 1.42207 1.67891 1.73531 3.27895 3.33764 3.36635 3.75463 3.85555 3.93094 4.28290 4.41420 4.61377 4.65227 4.78704 4.91675 4.95109 5.00280 5.12179 5.17391 5.26752 5.28851 5.35337 5.38476 5.43685 5.48333 5.71462 5.86558 6.05028 6.07894 6.19987 6.23010 6.27722 6.55810 6.58631 6.68249 6.69533 6.75271 7.00459 7.12316 7.16398 7.52041 7.65359 7.82521 8.08284 8.24842 8.91367 9.50000 11.01960 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023567 B = 0.002079 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.793742 B =13467.856898 C =13887.455764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.065 3.935 11 O -0.315 6.315 12 C 0.144 3.856 13 C -0.210 4.210 14 C -0.081 4.081 15 C -0.166 4.166 16 C -0.053 4.053 17 C 0.103 3.897 18 N -0.680 5.680 19 C 0.086 3.914 20 C -0.134 4.134 21 C -0.160 4.160 22 C 0.106 3.894 23 O -0.572 6.572 24 C -0.138 4.138 25 H 0.263 0.737 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.130 0.870 31 H 0.120 0.880 32 H 0.114 0.886 33 H 0.039 0.961 34 H 0.083 0.917 35 H 0.346 0.654 36 H 0.034 0.966 37 H 0.083 0.917 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.381 0.619 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.756 -26.758 -4.912 27.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.009 4.009 11 O -0.228 6.228 12 C 0.097 3.903 13 C -0.229 4.229 14 C -0.099 4.099 15 C -0.185 4.185 16 C -0.053 4.053 17 C -0.026 4.026 18 N -0.312 5.312 19 C -0.042 4.042 20 C -0.153 4.153 21 C -0.179 4.179 22 C 0.028 3.972 23 O -0.378 6.378 24 C -0.158 4.158 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.147 0.853 31 H 0.138 0.862 32 H 0.132 0.868 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.164 0.836 36 H 0.053 0.947 37 H 0.102 0.898 38 H 0.136 0.864 39 H 0.131 0.869 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.228 0.772 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.991 -26.102 -4.355 26.631 hybrid contribution 1.173 0.367 -0.326 1.271 sum 4.164 -25.735 -4.682 26.486 Atomic orbital electron populations 1.69981 1.06090 1.26948 1.49704 1.24995 0.94917 0.99385 0.94931 0.86482 0.79723 0.82932 0.78210 1.20501 1.21046 1.19782 1.20973 0.93045 0.90228 1.52219 0.92374 1.19126 0.94190 0.89017 0.98896 1.23325 0.97073 0.80862 0.99622 1.86177 1.36526 1.13186 1.86947 1.19200 0.90092 0.87564 0.93400 1.21400 0.93260 0.99828 1.08441 1.20843 0.99359 0.91893 0.97776 1.20775 0.93754 0.97431 1.06555 1.19363 0.93073 0.93761 0.99108 1.20849 0.99864 0.92442 0.89410 1.60431 1.30059 1.27309 1.13373 1.21011 0.99690 0.89670 0.93835 1.22817 0.99358 0.95687 0.97399 1.22636 1.01405 0.97834 0.96069 1.21132 0.86397 0.97217 0.92431 1.86509 1.34818 1.84211 1.32239 1.20259 1.00310 0.89120 1.06074 0.92716 0.95375 0.95375 0.93157 0.93148 0.85259 0.86219 0.86796 0.94247 0.89908 0.83612 0.94740 0.89833 0.86368 0.86886 0.92781 0.92876 0.77209 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.53 -14.78 9.11 -34.44 -0.31 -15.10 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.66 5.34 -27.89 -0.15 0.51 16 10 C 0.07 1.42 4.68 37.16 0.17 1.59 16 11 O -0.32 -6.63 10.14 -19.43 -0.20 -6.83 16 12 C 0.14 2.57 6.69 -39.22 -0.26 2.31 16 13 C -0.21 -3.35 9.04 -39.43 -0.36 -3.70 16 14 C -0.08 -1.07 10.04 -39.60 -0.40 -1.46 16 15 C -0.17 -2.03 9.70 -39.56 -0.38 -2.42 16 16 C -0.05 -0.67 5.39 -104.64 -0.56 -1.24 16 17 C 0.10 1.04 5.81 -4.98 -0.03 1.01 16 18 N -0.68 -6.73 6.48 -116.34 -0.75 -7.49 16 19 C 0.09 0.70 6.13 -4.98 -0.03 0.67 16 20 C -0.13 -1.05 9.37 -36.03 -0.34 -1.39 16 21 C -0.16 -1.23 9.50 -36.03 -0.34 -1.57 16 22 C 0.11 0.69 7.46 36.01 0.27 0.96 16 23 O -0.57 -4.33 13.64 -35.23 -0.48 -4.81 16 24 C -0.14 -2.15 9.64 -39.43 -0.38 -2.53 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.05 1.04 7.68 -51.93 -0.40 0.64 16 29 H 0.05 1.05 7.65 -51.93 -0.40 0.65 16 30 H 0.13 2.03 6.30 -52.48 -0.33 1.70 16 31 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.11 1.12 8.06 -52.49 -0.42 0.69 16 33 H 0.04 0.35 8.09 -51.93 -0.42 -0.07 16 34 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 35 H 0.35 3.38 8.72 -39.29 -0.34 3.04 16 36 H 0.03 0.26 7.79 -51.92 -0.40 -0.15 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.12 0.94 7.90 -52.48 -0.41 0.52 16 39 H 0.11 0.87 7.84 -52.48 -0.41 0.46 16 40 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.05 0.31 7.86 -51.93 -0.41 -0.10 16 42 H 0.38 1.06 9.12 45.56 0.42 1.47 16 43 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -32.16 367.56 -9.41 -41.57 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.03 Total: 2.27 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: -3.20 Total: -20.76 kcal Atomic # 7 Polarization: -33.32 SS G_CDS: -0.02 Total: -33.33 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -0.68 Total: -11.64 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.16 -9.41 -41.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594974483.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.752 kcal (2) G-P(sol) polarization free energy of solvation -32.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds