Wall clock time and date at job start Tue Mar 31 2020 08:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35900 * 117.00172 * 179.97438 * 11 10 9 13 13 C 1.38746 * 120.05467 * 359.72752 * 12 11 10 14 14 C 1.38129 * 119.94586 * 179.74253 * 13 12 11 15 15 C 1.38288 * 120.05279 * 0.50650 * 14 13 12 16 16 C 1.38250 * 120.10917 * 359.76642 * 15 14 13 17 17 C 1.50704 * 119.96871 * 179.97438 * 16 15 14 18 18 N 1.46898 * 109.47159 * 270.02290 * 17 16 15 19 19 C 1.46900 * 111.00021 * 180.02562 * 18 17 16 20 20 C 1.50695 * 109.47116 * 180.02562 * 19 18 17 21 21 C 1.30999 * 120.00317 * 125.00489 * 20 19 18 22 22 C 1.50701 * 119.99833 * 180.02562 * 21 20 19 23 23 O 1.42904 * 109.46979 * 134.99662 * 22 21 20 24 24 C 1.38162 * 120.05723 * 359.97438 * 16 15 14 25 25 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 27 27 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 28 28 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 29 29 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 30 30 H 1.08010 * 120.02919 * 359.97292 * 13 12 11 31 31 H 1.07992 * 119.97408 * 180.25091 * 14 13 12 32 32 H 1.07997 * 119.94352 * 179.74725 * 15 14 13 33 33 H 1.09003 * 109.46632 * 30.02434 * 17 16 15 34 34 H 1.08996 * 109.46429 * 150.02007 * 17 16 15 35 35 H 1.00903 * 110.99590 * 56.04543 * 18 17 16 36 36 H 1.09008 * 109.46830 * 300.00052 * 19 18 17 37 37 H 1.08997 * 109.46985 * 59.99504 * 19 18 17 38 38 H 1.08005 * 119.99939 * 304.99467 * 20 19 18 39 39 H 1.08005 * 119.99744 * 359.97438 * 21 20 19 40 40 H 1.08998 * 109.46746 * 254.99056 * 22 21 20 41 41 H 1.08997 * 109.47487 * 14.99271 * 22 21 20 42 42 H 0.96698 * 113.99598 * 179.97438 * 23 22 21 43 43 H 1.07998 * 120.02891 * 180.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.2707 -6.0394 -0.0007 13 6 3.6563 -5.9682 -0.0064 14 6 4.4064 -7.1281 -0.0017 15 6 3.7773 -8.3596 -0.0018 16 6 2.3968 -8.4332 -0.0018 17 6 1.7145 -9.7770 -0.0025 18 7 1.4933 -10.2131 -1.3877 19 6 0.8280 -11.5222 -1.4275 20 6 0.6189 -11.9360 -2.8614 21 6 1.0757 -13.0888 -3.2838 22 6 0.8670 -13.5021 -4.7179 23 8 2.0847 -14.0358 -5.2418 24 6 1.6421 -7.2759 -0.0011 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5566 0.8902 28 1 2.8718 -3.6044 0.8905 29 1 2.8718 -3.6044 -0.8895 30 1 4.1481 -5.0066 -0.0109 31 1 5.4849 -7.0732 -0.0020 32 1 4.3655 -9.2654 -0.0022 33 1 2.3435 -10.5040 0.5114 34 1 0.7564 -9.6981 0.5111 35 1 2.3602 -10.2318 -1.9036 36 1 1.4505 -12.2616 -0.9234 37 1 -0.1363 -11.4551 -0.9239 38 1 0.0922 -11.2821 -3.5408 39 1 1.6025 -13.7425 -2.6045 40 1 0.0867 -14.2616 -4.7672 41 1 0.5675 -12.6348 -5.3062 42 1 2.0238 -14.3234 -6.1631 43 1 0.5637 -7.3340 -0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594974483.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:30 Heat of formation + Delta-G solvation = -81.781852 kcal Electronic energy + Delta-G solvation = -21250.287575 eV Core-core repulsion = 17873.585287 eV Total energy + Delta-G solvation = -3376.702288 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -41.07827 -39.00784 -38.23572 -37.15283 -35.48357 -34.61044 -32.59034 -32.06388 -30.59303 -28.56340 -27.05530 -25.87305 -23.80311 -23.50928 -23.21079 -21.59026 -20.61224 -19.12847 -18.27242 -18.10598 -17.24175 -16.94289 -16.89866 -16.77182 -16.43619 -15.89201 -15.80819 -15.38516 -14.86184 -14.71576 -14.33627 -14.31151 -14.26806 -13.72662 -13.47775 -13.21506 -13.06184 -12.90039 -12.69076 -12.57613 -12.54689 -12.42519 -11.94797 -11.75513 -11.59419 -11.56201 -11.37753 -11.24664 -10.62607 -10.10046 -9.82455 -9.40880 -9.08758 -8.27051 -6.40969 0.33465 0.53521 1.11895 1.40596 1.43077 1.54229 2.27209 2.51430 2.77039 3.07174 3.34358 3.58016 3.82545 3.92586 4.07511 4.11037 4.16299 4.23658 4.26150 4.31679 4.38536 4.43969 4.51196 4.55232 4.60598 4.66747 4.72845 4.78074 4.81306 4.86766 5.11014 5.31000 5.44321 5.45915 5.52234 5.59944 5.64561 5.68186 5.69292 5.89066 6.03049 6.07600 6.40933 6.57859 6.73715 6.87790 7.29107 8.86094 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023567 B = 0.002079 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.793742 B =13467.856898 C =13887.455764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.978 3.022 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.547 4.547 8 H 0.071 0.929 9 C 0.028 3.972 10 C 0.085 3.915 11 O -0.343 6.343 12 C 0.105 3.895 13 C -0.223 4.223 14 C -0.078 4.078 15 C -0.153 4.153 16 C -0.047 4.047 17 C 0.107 3.893 18 N -0.693 5.693 19 C 0.089 3.911 20 C -0.140 4.140 21 C -0.161 4.161 22 C 0.102 3.898 23 O -0.594 6.594 24 C -0.152 4.152 25 H 0.267 0.733 26 H -0.002 1.002 27 H -0.001 1.001 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.126 0.874 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.346 0.654 36 H 0.045 0.955 37 H 0.085 0.915 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.399 0.601 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.021 -28.310 -5.061 29.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.801 3.199 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.183 1.183 7 C -0.584 4.584 8 H 0.089 0.911 9 C -0.010 4.010 10 C 0.011 3.989 11 O -0.257 6.257 12 C 0.060 3.940 13 C -0.242 4.242 14 C -0.096 4.096 15 C -0.172 4.172 16 C -0.047 4.047 17 C -0.021 4.021 18 N -0.325 5.325 19 C -0.039 4.039 20 C -0.158 4.158 21 C -0.180 4.180 22 C 0.025 3.975 23 O -0.403 6.403 24 C -0.171 4.171 25 H 0.076 0.924 26 H 0.016 0.984 27 H 0.017 0.983 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.144 0.856 31 H 0.169 0.831 32 H 0.168 0.832 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.165 0.835 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.249 0.751 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.266 -27.691 -4.519 28.548 hybrid contribution 0.458 0.644 -0.310 0.849 sum 5.724 -27.047 -4.829 28.065 Atomic orbital electron populations 1.70128 1.08056 1.28232 1.50561 1.26065 0.95856 1.03742 0.94136 0.85263 0.78552 0.77444 0.78664 1.19539 1.20602 1.18308 1.21396 0.93831 0.91000 1.52206 0.91101 1.18972 0.94573 0.91440 0.95985 1.22847 0.95380 0.80275 1.00410 1.86084 1.37523 1.13793 1.88322 1.19532 0.91143 0.86858 0.96505 1.21511 0.92538 1.01009 1.09103 1.21221 1.00842 0.91174 0.96336 1.21219 0.93614 0.98449 1.03874 1.19681 0.93604 0.93991 0.97435 1.20835 1.00131 0.91277 0.89904 1.60390 1.30294 1.28610 1.13199 1.21014 0.99769 0.89012 0.94094 1.22770 0.99875 0.95851 0.97352 1.22777 1.00847 0.97623 0.96795 1.21207 0.86533 0.97952 0.91819 1.86448 1.35456 1.84407 1.34031 1.20410 1.00429 0.89433 1.06826 0.92433 0.98404 0.98302 0.92209 0.92311 0.85575 0.83114 0.83227 0.91976 0.89901 0.83521 0.93653 0.89687 0.86785 0.86942 0.91196 0.92383 0.75055 0.86033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.23 13.29 21.45 0.28 -56.95 16 2 C 0.00 0.03 5.46 84.65 0.46 0.49 16 3 Si 0.98 43.88 29.54 68.60 2.03 45.90 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.55 -31.32 9.11 25.60 0.23 -31.09 16 8 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 9 C 0.03 1.54 5.34 29.85 0.16 1.70 16 10 C 0.09 3.85 4.68 71.98 0.34 4.19 16 11 O -0.34 -15.18 10.14 -92.43 -0.94 -16.11 16 12 C 0.10 3.83 6.69 22.50 0.15 3.98 16 13 C -0.22 -6.96 9.04 22.37 0.20 -6.76 16 14 C -0.08 -1.85 10.04 22.26 0.22 -1.63 16 15 C -0.15 -3.23 9.70 22.28 0.22 -3.01 16 16 C -0.05 -1.11 5.39 -19.88 -0.11 -1.22 16 17 C 0.11 1.91 5.81 85.56 0.50 2.41 16 18 N -0.69 -12.44 6.48 -521.98 -3.38 -15.82 16 19 C 0.09 1.28 6.13 85.56 0.52 1.80 16 20 C -0.14 -2.02 9.37 25.65 0.24 -1.78 16 21 C -0.16 -2.24 9.50 25.65 0.24 -2.00 16 22 C 0.10 1.18 7.46 71.24 0.53 1.72 16 23 O -0.59 -8.09 13.64 -148.98 -2.03 -10.13 16 24 C -0.15 -4.76 9.64 22.36 0.22 -4.54 16 25 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 26 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 27 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 28 H 0.06 2.54 7.68 -2.39 -0.02 2.52 16 29 H 0.06 2.51 7.65 -2.39 -0.02 2.49 16 30 H 0.13 3.92 6.30 -2.91 -0.02 3.90 16 31 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 32 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 33 H 0.06 0.86 8.09 -2.39 -0.02 0.84 16 34 H 0.08 1.49 8.08 -2.39 -0.02 1.47 16 35 H 0.35 6.02 8.72 -89.69 -0.78 5.24 16 36 H 0.05 0.56 7.79 -2.38 -0.02 0.54 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 38 H 0.11 1.73 7.90 -2.91 -0.02 1.71 16 39 H 0.11 1.56 7.84 -2.91 -0.02 1.53 16 40 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.06 0.60 7.86 -2.39 -0.02 0.59 16 42 H 0.40 1.62 9.12 -74.06 -0.68 0.95 16 43 H 0.12 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -71.28 367.56 -0.36 -71.64 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -0.45 Total: 17.21 kcal Atomic # 6 Polarization: -39.87 SS G_CDS: 4.13 Total: -35.74 kcal Atomic # 7 Polarization: -69.67 SS G_CDS: -3.10 Total: -72.77 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -2.97 Total: -26.24 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -71.28 -0.36 -71.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594974483.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.140 kcal (2) G-P(sol) polarization free energy of solvation -71.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds