Wall clock time and date at job start Tue Mar 31 2020 08:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 120.00221 * 2 1 4 4 H 1.48499 * 109.46955 * 239.99587 * 3 2 1 5 5 H 1.48496 * 109.46841 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47043 * 119.99713 * 3 2 1 7 7 C 1.37878 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99839 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00289 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47634 * 179.97438 * 9 7 2 11 11 O 1.42894 * 109.47277 * 179.97438 * 10 9 7 12 12 C 1.35903 * 116.99691 * 180.02562 * 11 10 9 13 13 C 1.38753 * 120.05942 * 0.02562 * 12 11 10 14 14 C 1.38120 * 119.94427 * 179.97438 * 13 12 11 15 15 C 1.38284 * 120.05675 * 359.74912 * 14 13 12 16 16 C 1.38248 * 120.11020 * 0.50450 * 15 14 13 17 17 C 1.50702 * 119.97051 * 179.77240 * 16 15 14 18 18 N 1.46903 * 109.46695 * 269.72512 * 17 16 15 19 19 C 1.46905 * 110.99622 * 180.02562 * 18 17 16 20 20 H 1.09002 * 112.85115 * 334.66353 * 19 18 17 21 21 C 1.53785 * 113.69113 * 105.93557 * 19 18 17 22 22 C 1.53779 * 87.08093 * 139.98964 * 21 19 18 23 23 H 1.08994 * 113.61314 * 220.01752 * 22 21 19 24 24 O 1.42902 * 113.61306 * 89.11547 * 22 21 19 25 25 C 1.53781 * 113.61177 * 203.47134 * 19 18 17 26 26 C 1.38164 * 120.05406 * 359.49335 * 16 15 14 27 27 H 0.96998 * 119.99702 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47210 * 59.99217 * 9 7 2 29 29 H 1.09005 * 109.46631 * 300.00147 * 9 7 2 30 30 H 1.09000 * 109.46700 * 59.99536 * 10 9 7 31 31 H 1.09005 * 109.46778 * 300.00129 * 10 9 7 32 32 H 1.08003 * 120.02278 * 359.97438 * 13 12 11 33 33 H 1.08000 * 119.96873 * 180.02562 * 14 13 12 34 34 H 1.08001 * 119.94402 * 180.27517 * 15 14 13 35 35 H 1.09000 * 109.46939 * 149.72578 * 17 16 15 36 36 H 1.08995 * 109.47132 * 29.72123 * 17 16 15 37 37 H 1.00897 * 111.00055 * 303.94831 * 18 17 16 38 38 H 1.09003 * 113.60734 * 254.54083 * 21 19 18 39 39 H 1.08996 * 113.61146 * 25.43581 * 21 19 18 40 40 H 0.96698 * 114.00167 * 82.50244 * 24 22 21 41 41 H 1.09005 * 113.61302 * 334.47923 * 25 19 18 42 42 H 1.08993 * 113.62030 * 105.38769 * 25 19 18 43 43 H 1.08000 * 120.02422 * 180.27269 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 8 1.5306 -4.8996 0.0011 12 6 2.2708 -6.0394 0.0018 13 6 3.6565 -5.9682 0.0023 14 6 4.4065 -7.1281 0.0035 15 6 3.7774 -8.3596 0.0093 16 6 2.3969 -8.4332 0.0035 17 6 1.7147 -9.7770 0.0047 18 7 1.4932 -10.2148 -1.3800 19 6 0.8279 -11.5240 -1.4180 20 1 1.0082 -12.1167 -0.5211 21 6 -0.6544 -11.4524 -1.8214 22 6 -0.4098 -12.7261 -2.6477 23 1 -0.9165 -12.7245 -3.6127 24 8 -0.6171 -13.9339 -1.9126 25 6 1.0652 -12.2978 -2.7256 26 6 1.6422 -7.2759 0.0024 27 1 -0.4849 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6240 -2.5566 0.8903 30 1 2.8718 -3.6044 0.8905 31 1 2.8718 -3.6044 -0.8895 32 1 4.1482 -5.0066 0.0019 33 1 5.4851 -7.0731 0.0043 34 1 4.3656 -9.2653 0.0147 35 1 0.7566 -9.6975 0.5183 36 1 2.3437 -10.5033 0.5192 37 1 0.9665 -9.5268 -1.8969 38 1 -1.3412 -11.5979 -0.9876 39 1 -0.9004 -10.5798 -2.4265 40 1 -1.5428 -14.2084 -1.8600 41 1 1.2891 -11.6564 -3.5780 42 1 1.7663 -13.1258 -2.6219 43 1 0.5638 -7.3340 0.0023 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595001470.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:39 Heat of formation + Delta-G solvation = -73.456198 kcal Electronic energy + Delta-G solvation = -21838.773276 eV Core-core repulsion = 18462.432015 eV Total energy + Delta-G solvation = -3376.341260 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.11697 -40.43732 -38.75596 -36.63401 -35.48722 -34.50116 -32.59108 -31.53573 -30.51244 -27.17865 -26.64029 -26.41008 -24.08921 -23.39185 -23.32142 -21.62061 -20.68689 -19.12493 -18.28394 -18.07423 -17.05353 -16.95248 -16.87031 -16.64779 -16.42727 -16.32109 -15.38435 -15.29858 -14.84110 -14.35137 -14.33363 -14.32224 -14.15946 -13.54326 -13.35757 -13.10220 -13.07412 -12.95079 -12.67309 -12.57165 -12.52575 -12.29624 -12.22824 -11.81023 -11.59565 -11.58219 -11.39796 -11.23124 -10.68511 -10.62398 -9.85645 -9.30260 -9.09565 -8.27508 -6.41371 0.33528 0.54069 1.40381 1.44416 1.52400 2.26284 2.50410 2.75447 3.06725 3.18943 3.34617 3.62902 3.73978 3.87357 3.90903 3.98472 4.11200 4.21120 4.22916 4.25671 4.37855 4.45760 4.53843 4.57202 4.67682 4.72694 4.78942 4.79702 4.86543 5.08246 5.10721 5.16267 5.22597 5.30426 5.42482 5.45350 5.52500 5.64583 5.67692 5.89639 6.06115 6.09147 6.38584 6.56496 6.73109 6.88119 7.28702 8.85395 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027343 B = 0.002303 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.773318 B =12154.110554 C =12904.474528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.977 3.023 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.071 0.929 9 C 0.029 3.971 10 C 0.085 3.915 11 O -0.342 6.342 12 C 0.107 3.893 13 C -0.222 4.222 14 C -0.079 4.079 15 C -0.141 4.141 16 C -0.046 4.046 17 C 0.107 3.893 18 N -0.678 5.678 19 C 0.071 3.929 20 H 0.095 0.905 21 C -0.197 4.197 22 C 0.081 3.919 23 H 0.084 0.916 24 O -0.570 6.570 25 C -0.123 4.123 26 C -0.164 4.164 27 H 0.267 0.733 28 H -0.002 1.002 29 H -0.002 1.002 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.126 0.874 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.042 0.958 36 H 0.094 0.906 37 H 0.345 0.655 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.397 0.603 41 H 0.102 0.898 42 H 0.069 0.931 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.190 -26.198 -3.351 26.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.585 4.585 8 H 0.089 0.911 9 C -0.009 4.009 10 C 0.011 3.989 11 O -0.257 6.257 12 C 0.061 3.939 13 C -0.241 4.241 14 C -0.096 4.096 15 C -0.160 4.160 16 C -0.046 4.046 17 C -0.022 4.022 18 N -0.308 5.308 19 C -0.039 4.039 20 H 0.113 0.887 21 C -0.237 4.237 22 C 0.022 3.978 23 H 0.102 0.898 24 O -0.378 6.378 25 C -0.161 4.161 26 C -0.183 4.183 27 H 0.076 0.924 28 H 0.017 0.983 29 H 0.016 0.984 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.144 0.856 33 H 0.168 0.832 34 H 0.164 0.836 35 H 0.060 0.940 36 H 0.112 0.888 37 H 0.164 0.836 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.247 0.753 41 H 0.120 0.880 42 H 0.087 0.913 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.105 -26.288 -3.344 26.816 hybrid contribution -1.428 1.557 0.268 2.130 sum 2.677 -24.731 -3.077 25.065 Atomic orbital electron populations 1.70114 1.08043 1.28309 1.50521 1.26057 0.95853 1.03724 0.94136 0.85329 0.78115 0.77137 0.79443 1.18814 1.20752 1.18829 1.21367 0.93826 0.91016 1.52279 0.91121 1.18959 0.94542 0.91395 0.95964 1.22848 0.95386 0.80263 1.00429 1.86076 1.37481 1.13769 1.88341 1.19479 0.91084 0.86822 0.96487 1.21504 0.92605 1.00921 1.09088 1.21242 1.00863 0.91206 0.96335 1.21170 0.93757 0.98218 1.02811 1.19681 0.93968 0.93591 0.97371 1.20859 0.98774 0.92118 0.90413 1.60491 1.53233 1.04449 1.12589 1.23008 0.91820 0.90367 0.98679 0.88718 1.24353 0.98189 0.99800 1.01322 1.22591 0.97658 0.83452 0.94132 0.89782 1.86420 1.33620 1.41238 1.76559 1.23191 0.95203 0.99213 0.98534 1.20422 1.00327 0.89506 1.08038 0.92421 0.98342 0.98371 0.92282 0.92251 0.85566 0.83218 0.83559 0.93962 0.88800 0.83601 0.91049 0.88738 0.75250 0.87985 0.91261 0.85836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.98 43.56 29.54 68.60 2.03 45.59 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.55 -31.08 9.11 25.60 0.23 -30.84 16 8 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 9 C 0.03 1.58 5.34 29.85 0.16 1.74 16 10 C 0.09 3.79 4.68 71.98 0.34 4.12 16 11 O -0.34 -14.78 10.14 -92.46 -0.94 -15.72 16 12 C 0.11 3.79 6.69 22.51 0.15 3.94 16 13 C -0.22 -6.89 9.04 22.36 0.20 -6.69 16 14 C -0.08 -1.91 10.04 22.25 0.22 -1.68 16 15 C -0.14 -3.14 9.70 22.28 0.22 -2.93 16 16 C -0.05 -1.09 5.39 -19.88 -0.11 -1.19 16 17 C 0.11 1.98 5.67 85.56 0.48 2.46 16 18 N -0.68 -11.97 6.60 -492.83 -3.25 -15.23 16 19 C 0.07 1.10 4.10 45.44 0.19 1.28 16 20 H 0.09 1.57 7.88 -2.39 -0.02 1.55 16 21 C -0.20 -2.55 7.54 31.12 0.23 -2.32 16 22 C 0.08 0.99 5.28 31.12 0.16 1.16 16 23 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 24 O -0.57 -7.53 13.59 -148.98 -2.02 -9.56 16 25 C -0.12 -1.76 7.71 31.12 0.24 -1.53 16 26 C -0.16 -4.90 9.64 22.37 0.22 -4.69 16 27 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 28 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 29 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 30 H 0.06 2.48 7.66 -2.39 -0.02 2.46 16 31 H 0.06 2.49 7.66 -2.38 -0.02 2.47 16 32 H 0.13 3.89 6.30 -2.91 -0.02 3.87 16 33 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 34 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 35 H 0.04 0.77 8.08 -2.39 -0.02 0.75 16 36 H 0.09 1.52 8.07 -2.39 -0.02 1.50 16 37 H 0.34 6.28 8.20 -89.70 -0.74 5.55 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.09 1.17 7.83 -2.39 -0.02 1.15 16 40 H 0.40 1.85 9.12 -74.06 -0.68 1.18 16 41 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 42 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.12 3.58 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -68.61 359.73 -0.90 -69.52 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -0.40 Total: 18.60 kcal Atomic # 6 Polarization: -40.05 SS G_CDS: 3.40 Total: -36.64 kcal Atomic # 7 Polarization: -68.82 SS G_CDS: -2.97 Total: -71.79 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -2.96 Total: -25.27 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -68.61 -0.90 -69.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595001470.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.938 kcal (2) G-P(sol) polarization free energy of solvation -68.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds