Wall clock time and date at job start Tue Mar 31 2020 08:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99921 * 2 1 4 4 H 1.48497 * 109.47171 * 274.99776 * 3 2 1 5 5 H 1.48504 * 109.47111 * 34.99792 * 3 2 1 6 6 H 1.48498 * 109.47279 * 154.99314 * 3 2 1 7 7 C 1.37872 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00129 * 184.95865 * 7 2 1 9 9 C 1.50705 * 119.99919 * 4.97206 * 7 2 1 10 10 O 1.42892 * 110.27257 * 296.92318 * 9 7 2 11 11 C 1.54600 * 110.30993 * 59.11543 * 9 7 2 12 12 C 1.54932 * 102.91852 * 140.87323 * 11 9 7 13 13 N 1.48539 * 103.23042 * 322.58680 * 12 11 9 14 14 C 1.46897 * 110.99807 * 159.72411 * 13 12 11 15 15 C 1.52991 * 109.47863 * 52.60347 * 14 13 12 16 16 O 1.42903 * 109.47223 * 64.99732 * 15 14 13 17 17 C 1.42897 * 114.00511 * 180.02562 * 16 15 14 18 18 C 1.50693 * 109.47501 * 179.97438 * 17 16 15 19 19 C 1.38234 * 119.99925 * 90.00130 * 18 17 16 20 20 C 1.38241 * 120.00017 * 179.97438 * 19 18 17 21 21 C 1.38232 * 119.99883 * 359.97438 * 20 19 18 22 22 C 1.38234 * 120.00120 * 359.97438 * 21 20 19 23 23 C 1.38230 * 120.00020 * 359.97128 * 22 21 20 24 24 C 1.47901 * 105.81807 * 39.20575 * 13 12 11 25 25 H 0.97003 * 120.00213 * 0.02562 * 1 2 3 26 26 H 0.96701 * 114.00529 * 57.90710 * 10 9 7 27 27 H 1.08997 * 110.72425 * 259.23220 * 11 9 7 28 28 H 1.09003 * 110.72002 * 22.33834 * 11 9 7 29 29 H 1.09007 * 110.67011 * 204.15477 * 12 11 9 30 30 H 1.08996 * 110.66891 * 81.02167 * 12 11 9 31 31 H 1.08996 * 109.47209 * 292.59660 * 14 13 12 32 32 H 1.09009 * 109.47046 * 172.60598 * 14 13 12 33 33 H 1.09005 * 109.47171 * 304.99957 * 15 14 13 34 34 H 1.09000 * 109.47479 * 184.99931 * 15 14 13 35 35 H 1.09004 * 109.46847 * 59.99927 * 17 16 15 36 36 H 1.09001 * 109.47149 * 300.00408 * 17 16 15 37 37 H 1.07993 * 120.00198 * 0.25712 * 19 18 17 38 38 H 1.08000 * 120.00051 * 179.97438 * 20 19 18 39 39 H 1.07996 * 119.99804 * 179.97438 * 21 20 19 40 40 H 1.08004 * 120.00458 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.00094 * 179.97438 * 23 22 21 42 42 H 1.09001 * 109.91508 * 94.02671 * 24 13 12 43 43 H 1.09001 * 109.91697 * 215.31346 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3910 2.1074 -1.3947 5 1 1.5034 2.6199 0.8030 6 1 3.5955 1.4121 0.5918 7 6 2.0045 -1.1940 0.0005 8 1 3.0815 -1.1957 0.0814 9 6 1.2553 -2.4967 -0.1120 10 8 0.3948 -2.6720 1.0152 11 6 0.4386 -2.5344 -1.4241 12 6 0.6072 -4.0008 -1.8951 13 7 2.0127 -4.3151 -1.5315 14 6 2.2239 -5.7666 -1.4524 15 6 1.7407 -6.4237 -2.7468 16 8 2.5525 -5.9824 -3.8369 17 6 2.1829 -6.5397 -5.0998 18 6 3.0997 -6.0081 -6.1712 19 6 4.2680 -6.6805 -6.4772 20 6 5.1088 -6.1932 -7.4603 21 6 4.7809 -5.0337 -8.1378 22 6 3.6120 -4.3619 -7.8325 23 6 2.7708 -4.8498 -6.8502 24 6 2.2426 -3.6736 -0.2188 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2491 -1.9602 1.1330 27 1 -0.6105 -2.3092 -1.2321 28 1 0.8528 -1.8412 -2.1562 29 1 0.4622 -4.0779 -2.9727 30 1 -0.0832 -4.6569 -1.3651 31 1 1.6635 -6.1700 -0.6090 32 1 3.2855 -5.9724 -1.3148 33 1 0.7030 -6.1450 -2.9304 34 1 1.8148 -7.5072 -2.6540 35 1 1.1545 -6.2629 -5.3320 36 1 2.2658 -7.6256 -5.0560 37 1 4.5218 -7.5890 -5.9514 38 1 6.0218 -6.7183 -7.6991 39 1 5.4379 -4.6528 -8.9056 40 1 3.3560 -3.4557 -8.3615 41 1 1.8577 -4.3246 -6.6114 42 1 2.0556 -4.3891 0.5819 43 1 3.2669 -3.3056 -0.1597 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595562848.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:53 Heat of formation + Delta-G solvation = -63.191102 kcal Electronic energy + Delta-G solvation = -23168.228768 eV Core-core repulsion = 19792.332635 eV Total energy + Delta-G solvation = -3375.896132 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -39.42987 -38.57958 -37.28562 -34.78876 -32.18690 -32.06297 -30.96211 -30.54714 -28.23255 -27.31303 -25.75954 -24.19686 -22.64700 -22.38531 -21.34829 -19.90194 -19.33664 -17.06592 -16.98556 -16.47758 -16.11650 -15.51312 -15.14537 -14.84241 -14.57849 -14.43223 -13.88995 -13.79447 -13.48350 -13.34660 -12.84119 -12.60103 -12.34656 -12.13900 -11.97574 -11.53348 -11.47242 -11.18555 -11.09070 -10.93542 -10.85026 -10.62458 -10.51512 -10.39398 -10.20919 -9.85936 -9.48544 -9.08682 -8.97393 -8.88899 -8.51564 -8.05335 -7.64944 -6.14862 -4.20166 1.20936 1.34821 3.27998 3.34961 3.39592 3.52748 4.11515 4.37306 4.63578 4.74124 4.78356 4.93410 5.03776 5.14192 5.17230 5.25879 5.32524 5.39045 5.48302 5.51568 5.58530 5.76677 5.87830 5.90374 5.97339 5.99035 6.12455 6.25056 6.31775 6.37066 6.43258 6.47300 6.54903 6.57462 6.91700 7.00480 7.12737 7.31434 7.37321 7.59057 7.75190 7.81218 7.91329 8.23238 8.81994 9.45363 9.56435 10.92821 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016558 B = 0.003738 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.572591 B = 7489.025615 C = 8577.474198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.062 0.938 9 C 0.242 3.758 10 O -0.596 6.596 11 C -0.115 4.115 12 C 0.032 3.968 13 N -0.503 5.503 14 C 0.048 3.952 15 C 0.065 3.935 16 O -0.360 6.360 17 C 0.100 3.900 18 C -0.084 4.084 19 C -0.100 4.100 20 C -0.127 4.127 21 C -0.118 4.118 22 C -0.123 4.123 23 C -0.094 4.094 24 C 0.053 3.947 25 H 0.265 0.735 26 H 0.382 0.618 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.029 0.971 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.034 0.966 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.651 -13.158 -13.110 18.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.080 0.920 9 C 0.202 3.798 10 O -0.406 6.406 11 C -0.154 4.154 12 C -0.095 4.095 13 N -0.228 5.228 14 C -0.081 4.081 15 C -0.012 4.012 16 O -0.279 6.279 17 C 0.023 3.977 18 C -0.085 4.085 19 C -0.119 4.119 20 C -0.145 4.145 21 C -0.136 4.136 22 C -0.141 4.141 23 C -0.112 4.112 24 C -0.074 4.074 25 H 0.075 0.925 26 H 0.232 0.768 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.052 0.948 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.378 -13.272 -13.396 19.360 hybrid contribution -0.658 0.946 0.454 1.238 sum 3.721 -12.327 -12.943 18.257 Atomic orbital electron populations 1.69689 1.05946 1.27280 1.51005 1.25005 0.94967 0.99408 0.93952 0.86466 0.79969 0.82861 0.78037 1.20575 1.21224 1.19761 1.21712 0.93859 0.90698 1.50289 0.91998 1.19376 0.86235 0.91361 0.82780 1.86087 1.51965 1.51788 1.50711 1.22922 1.00603 0.92148 0.99715 1.23282 0.88488 0.98711 0.99065 1.64848 1.22882 1.07228 1.27806 1.22299 1.01770 0.90079 0.93967 1.22626 0.94602 0.96728 0.87243 1.88138 1.56230 1.69332 1.14191 1.21269 0.96390 0.96440 0.83588 1.19618 0.96079 0.96190 0.96563 1.21038 0.93630 1.00003 0.97188 1.21112 0.99591 0.96884 0.96876 1.21171 0.96980 0.95607 0.99852 1.21163 0.94864 0.99931 0.98144 1.21124 0.99991 0.94863 0.95271 1.22886 1.00572 0.96018 0.87919 0.92474 0.76755 0.91825 0.91442 0.91837 0.95238 0.93674 0.90345 0.93085 0.93583 0.92751 0.93016 0.86125 0.86117 0.86189 0.85927 0.85763 0.94786 0.90343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.43 10.89 55.43 0.60 -23.82 16 2 C 0.07 1.85 5.22 -17.82 -0.09 1.75 16 3 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -14.59 8.12 -34.44 -0.28 -14.87 16 8 H 0.06 1.72 7.36 -52.49 -0.39 1.34 16 9 C 0.24 6.20 0.99 -90.41 -0.09 6.11 16 10 O -0.60 -15.83 12.94 -35.23 -0.46 -16.28 16 11 C -0.12 -2.76 5.32 -24.87 -0.13 -2.89 16 12 C 0.03 0.65 5.09 -1.90 -0.01 0.64 16 13 N -0.50 -10.25 5.34 -230.46 -1.23 -11.49 16 14 C 0.05 0.78 5.41 -3.83 -0.02 0.76 16 15 C 0.06 0.91 5.76 37.15 0.21 1.12 16 16 O -0.36 -5.59 10.27 -35.23 -0.36 -5.95 16 17 C 0.10 1.21 6.06 36.00 0.22 1.43 16 18 C -0.08 -1.06 5.51 -104.63 -0.58 -1.63 16 19 C -0.10 -1.13 9.70 -39.58 -0.38 -1.52 16 20 C -0.13 -1.30 10.05 -39.58 -0.40 -1.70 16 21 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 22 C -0.12 -1.36 10.05 -39.59 -0.40 -1.76 16 23 C -0.09 -1.17 9.70 -39.58 -0.38 -1.55 16 24 C 0.05 1.22 6.17 -2.76 -0.02 1.20 16 25 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 26 H 0.38 10.25 7.29 45.56 0.33 10.59 16 27 H 0.06 1.57 7.99 -51.93 -0.41 1.15 16 28 H 0.07 1.73 7.85 -51.93 -0.41 1.33 16 29 H 0.06 1.20 7.56 -51.92 -0.39 0.80 16 30 H 0.03 0.57 8.01 -51.93 -0.42 0.16 16 31 H 0.05 0.71 7.81 -51.93 -0.41 0.31 16 32 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16 33 H 0.05 0.71 6.52 -51.93 -0.34 0.37 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 36 H 0.05 0.52 8.09 -51.93 -0.42 0.10 16 37 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 40 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 41 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 42 H 0.03 0.75 7.39 -51.93 -0.38 0.37 16 43 H 0.08 1.82 7.39 -51.93 -0.38 1.43 16 LS Contribution 349.72 15.07 5.27 5.27 Total: -1.00 -29.88 349.72 -10.08 -39.95 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -6.13 Total: 10.63 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -2.75 Total: -14.50 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: -0.63 Total: -35.31 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.82 Total: -22.24 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.88 -10.08 -39.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595562848.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.238 kcal (2) G-P(sol) polarization free energy of solvation -29.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds