Wall clock time and date at job start Tue Mar 31 2020 07:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.76197 * 103.00012 * 2 1 4 4 C 1.38976 * 120.08028 * 180.02562 * 3 2 1 5 5 C 1.38074 * 119.91881 * 180.02562 * 4 3 2 6 6 C 1.38304 * 120.08387 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.92186 * 180.02562 * 6 5 4 8 8 N 1.46897 * 109.47757 * 89.99961 * 7 6 5 9 9 C 1.46848 * 111.00171 * 66.04054 * 8 7 6 10 10 C 1.53039 * 109.51997 * 174.16537 * 9 8 7 11 11 C 1.53119 * 109.28129 * 59.18522 * 10 9 8 12 12 C 1.53119 * 109.15731 * 302.34211 * 11 10 9 13 13 H 1.09002 * 109.50244 * 297.71261 * 12 11 10 14 14 C 1.50695 * 109.50187 * 177.63352 * 12 11 10 15 15 H 1.07995 * 120.00208 * 240.07644 * 14 12 11 16 16 C 1.37880 * 119.99919 * 60.08126 * 14 12 11 17 17 N 1.31509 * 120.00087 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99898 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47402 * 89.99923 * 18 16 14 20 20 H 1.48504 * 109.47240 * 209.99627 * 18 16 14 21 21 H 1.48501 * 109.47308 * 329.99761 * 18 16 14 22 22 C 1.46855 * 110.99462 * 301.83549 * 8 7 6 23 23 C 1.38305 * 120.15637 * 0.27142 * 6 5 4 24 24 C 1.38082 * 120.08273 * 359.45600 * 23 6 5 25 25 H 1.08993 * 109.46706 * 300.00094 * 1 2 3 26 26 H 1.08996 * 109.46899 * 59.99818 * 1 2 3 27 27 H 1.09004 * 109.46714 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.03395 * 359.97438 * 4 3 2 29 29 H 1.08007 * 119.96101 * 179.97438 * 5 4 3 30 30 H 1.08997 * 109.47042 * 329.99331 * 7 6 5 31 31 H 1.09003 * 109.47188 * 209.99572 * 7 6 5 32 32 H 1.09001 * 109.45994 * 54.14761 * 9 8 7 33 33 H 1.09003 * 109.46354 * 294.18321 * 9 8 7 34 34 H 1.08998 * 109.50346 * 299.23617 * 10 9 8 35 35 H 1.09009 * 109.53196 * 179.14253 * 10 9 8 36 36 H 1.08999 * 109.52354 * 182.43479 * 11 10 9 37 37 H 1.09004 * 109.57378 * 62.27732 * 11 10 9 38 38 H 0.97001 * 120.00645 * 180.02562 * 17 16 14 39 39 H 1.09003 * 109.46449 * 65.82226 * 22 8 7 40 40 H 1.08992 * 109.46444 * 305.85442 * 22 8 7 41 41 H 1.08003 * 119.95462 * 179.73090 * 23 6 5 42 42 H 1.07999 * 120.04229 * 180.27451 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5389 2.1250 -0.0005 5 6 3.8457 3.4712 0.0000 6 6 2.8329 4.4131 0.0005 7 6 3.1720 5.8814 0.0005 8 7 3.2815 6.3588 -1.3844 9 6 1.9820 6.3003 -2.0656 10 6 2.1020 6.9379 -3.4517 11 6 3.1595 6.1856 -4.2643 12 6 4.4915 6.2202 -3.5098 13 1 4.8246 7.2529 -3.4068 14 6 5.5236 5.4325 -4.2748 15 1 5.9992 4.5779 -3.8169 16 6 5.8608 5.8030 -5.5594 17 7 5.2814 6.8435 -6.1172 18 14 7.1397 4.8262 -6.5079 19 1 6.4704 3.7370 -7.2635 20 1 7.8458 5.7248 -7.4562 21 1 8.1196 4.2403 -5.5583 22 6 4.3023 5.6034 -2.1221 23 6 1.5098 4.0105 0.0062 24 6 1.1953 2.6660 0.0000 25 1 -0.3632 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 4.3302 1.3900 -0.0005 29 1 4.8779 3.7892 0.0000 30 1 4.1210 6.0352 0.5141 31 1 2.3867 6.4356 0.5147 32 1 1.2399 6.8424 -1.4794 33 1 1.6730 5.2602 -2.1698 34 1 2.3975 7.9818 -3.3477 35 1 1.1413 6.8809 -3.9635 36 1 3.2792 6.6631 -5.2369 37 1 2.8460 5.1509 -4.4027 38 1 5.5183 7.1041 -7.0210 39 1 3.9824 4.5666 -2.2260 40 1 5.2454 5.6394 -1.5770 41 1 0.7215 4.7488 0.0110 42 1 0.1619 2.3524 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595611567.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:36 Heat of formation + Delta-G solvation = 16.478177 kcal Electronic energy + Delta-G solvation = -21318.578185 eV Core-core repulsion = 18388.889642 eV Total energy + Delta-G solvation = -2929.688542 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 4.44 seconds Orbital eigenvalues (eV) -39.70163 -37.65092 -34.08532 -32.28035 -31.23702 -30.34795 -29.76676 -29.00300 -25.97967 -24.94395 -22.74202 -22.45937 -21.27380 -20.80074 -18.57358 -17.66513 -16.42036 -15.89209 -15.41399 -14.95994 -14.75098 -14.35499 -14.14453 -14.08548 -13.97877 -13.61408 -13.31335 -12.89950 -12.66845 -12.52612 -12.27283 -12.19770 -11.71949 -11.49991 -11.33699 -10.96564 -10.91004 -10.64208 -10.59312 -10.36454 -10.07595 -9.81107 -9.62961 -9.41312 -8.99830 -8.89143 -8.67520 -8.27541 -7.71225 -7.40571 -5.94486 -4.00313 1.21750 1.40834 1.42571 2.27947 3.32937 3.39632 3.42725 3.71241 4.43826 4.65753 4.78242 4.80256 4.81732 4.92397 5.04789 5.33031 5.35664 5.37233 5.42795 5.62610 5.73152 5.75728 5.87726 6.02159 6.07547 6.10042 6.24991 6.29596 6.35503 6.47626 6.53110 6.67809 6.74713 6.79730 6.94997 7.00188 7.24633 7.42050 7.66721 7.77478 7.82829 8.11426 8.20448 8.51582 9.03627 9.63842 11.11538 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015744 B = 0.004534 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.051939 B = 6174.393771 C = 7073.296572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.128 6.128 3 C -0.088 4.088 4 C -0.098 4.098 5 C -0.084 4.084 6 C -0.112 4.112 7 C 0.090 3.910 8 N -0.526 5.526 9 C 0.060 3.940 10 C -0.118 4.118 11 C -0.110 4.110 12 C 0.055 3.945 13 H 0.033 0.967 14 C -0.513 4.513 15 H 0.053 0.947 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.888 3.112 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.065 3.935 23 C -0.092 4.092 24 C -0.135 4.135 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.105 0.895 28 H 0.125 0.875 29 H 0.129 0.871 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.028 0.972 34 H 0.060 0.940 35 H 0.045 0.955 36 H 0.090 0.910 37 H 0.028 0.972 38 H 0.259 0.741 39 H 0.027 0.973 40 H 0.057 0.943 41 H 0.122 0.878 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.042 -8.035 13.508 18.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.113 5.887 3 C -0.200 4.200 4 C -0.121 4.121 5 C -0.104 4.104 6 C -0.116 4.116 7 C -0.038 4.038 8 N -0.248 5.248 9 C -0.068 4.068 10 C -0.156 4.156 11 C -0.148 4.148 12 C 0.036 3.964 13 H 0.051 0.949 14 C -0.551 4.551 15 H 0.071 0.929 16 C -0.138 4.138 17 N -0.528 5.528 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.062 4.062 23 C -0.112 4.112 24 C -0.159 4.159 25 H 0.101 0.899 26 H 0.103 0.897 27 H 0.124 0.876 28 H 0.143 0.857 29 H 0.147 0.853 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.047 0.953 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.108 0.892 37 H 0.047 0.953 38 H 0.069 0.931 39 H 0.045 0.955 40 H 0.075 0.925 41 H 0.140 0.860 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.247 -8.470 13.338 18.307 hybrid contribution -0.482 -0.376 -0.708 0.935 sum -9.729 -8.846 12.631 18.233 Atomic orbital electron populations 1.23634 0.94988 1.06845 1.05619 1.85420 1.06244 1.04019 1.93029 1.21607 0.96767 0.95861 1.05790 1.20729 0.94106 0.96225 1.01084 1.21069 0.99512 0.91960 0.97865 1.20852 0.93248 0.98175 0.99339 1.21310 1.02054 0.87954 0.92520 1.62449 1.07494 1.54143 1.00674 1.22080 0.90337 0.98534 0.95882 1.21681 0.99144 1.00546 0.94195 1.21641 0.94433 0.97425 1.01306 1.18665 0.92878 0.96766 0.88105 0.94891 1.21138 1.21759 1.13265 0.98968 0.92910 1.24919 0.96262 0.95014 0.97579 1.69887 1.42496 1.25817 1.14578 0.86654 0.81854 0.79931 0.79912 1.20807 1.21253 1.19950 1.22366 0.92276 0.94781 0.96775 1.20924 0.96091 0.95000 0.99212 1.21061 0.97811 0.93236 1.03751 0.89889 0.89745 0.87592 0.85669 0.85346 0.90128 0.90636 0.92657 0.95344 0.92133 0.93659 0.89168 0.95300 0.93106 0.95508 0.92489 0.86037 0.86261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.15 101.05 0.92 -0.22 16 2 S -0.13 -1.50 22.56 -107.50 -2.43 -3.92 16 3 C -0.09 -1.19 6.11 -39.03 -0.24 -1.43 16 4 C -0.10 -1.39 9.79 -39.37 -0.39 -1.78 16 5 C -0.08 -1.22 8.00 -39.62 -0.32 -1.54 16 6 C -0.11 -1.61 4.04 -104.58 -0.42 -2.03 16 7 C 0.09 1.30 5.55 -4.98 -0.03 1.28 16 8 N -0.53 -9.52 4.86 -236.11 -1.15 -10.67 16 9 C 0.06 1.04 4.83 -3.83 -0.02 1.02 16 10 C -0.12 -2.33 6.09 -26.65 -0.16 -2.49 16 11 C -0.11 -2.64 5.03 -26.61 -0.13 -2.78 16 12 C 0.05 1.38 2.26 -91.69 -0.21 1.17 16 13 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 14 C -0.51 -14.15 8.56 -34.44 -0.29 -14.44 16 15 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 16 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 17 N -0.89 -25.53 11.35 55.43 0.63 -24.90 16 18 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.06 1.37 3.76 -3.83 -0.01 1.35 16 23 C -0.09 -1.22 8.12 -39.61 -0.32 -1.54 16 24 C -0.14 -1.73 9.36 -39.37 -0.37 -2.10 16 25 H 0.08 0.59 7.75 -51.93 -0.40 0.19 16 26 H 0.08 0.67 7.75 -51.93 -0.40 0.27 16 27 H 0.11 0.66 8.14 -51.92 -0.42 0.24 16 28 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 29 H 0.13 1.79 8.02 -52.48 -0.42 1.36 16 30 H 0.08 1.11 8.08 -51.93 -0.42 0.69 16 31 H 0.08 0.96 8.00 -51.93 -0.42 0.55 16 32 H 0.05 0.84 8.06 -51.93 -0.42 0.42 16 33 H 0.03 0.51 6.56 -51.93 -0.34 0.17 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.04 0.81 8.14 -51.92 -0.42 0.38 16 36 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.03 0.59 6.46 -51.93 -0.34 0.25 16 40 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16 41 H 0.12 1.42 8.04 -52.48 -0.42 0.99 16 42 H 0.12 1.25 5.88 -52.49 -0.31 0.94 16 LS Contribution 339.32 15.07 5.11 5.11 Total: -1.00 -29.24 339.32 -11.64 -40.88 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -6.71 Total: 0.90 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: -2.08 Total: -23.85 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: -0.52 Total: -35.57 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.43 Total: -3.92 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.24 -11.64 -40.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595611567.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.361 kcal (2) G-P(sol) polarization free energy of solvation -29.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.44 seconds