Wall clock time and date at job start Tue Mar 31 2020 07:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76192 * 103.00008 * 2 1 4 4 C 1.38990 * 120.08360 * 0.02562 * 3 2 1 5 5 C 1.38061 * 119.92263 * 180.02562 * 4 3 2 6 6 C 1.38327 * 120.08187 * 0.02562 * 5 4 3 7 7 C 1.38280 * 120.15610 * 0.02562 * 6 5 4 8 8 C 1.38101 * 120.08231 * 359.67227 * 7 6 5 9 9 C 1.50702 * 120.04437 * 180.30088 * 8 7 6 10 10 N 1.46899 * 109.47278 * 105.34727 * 9 8 7 11 11 C 1.46855 * 111.00321 * 288.41113 * 10 9 8 12 12 C 1.53034 * 109.52495 * 174.15699 * 11 10 9 13 13 C 1.53120 * 109.27607 * 59.18028 * 12 11 10 14 14 C 1.53118 * 109.16297 * 302.34270 * 13 12 11 15 15 H 1.09000 * 109.53789 * 297.69673 * 14 13 12 16 16 C 1.50702 * 109.50525 * 177.59463 * 14 13 12 17 17 H 1.07997 * 120.00270 * 240.19885 * 16 14 13 18 18 C 1.37876 * 119.99471 * 60.20002 * 16 14 13 19 19 N 1.31511 * 120.00520 * 359.97438 * 18 16 14 20 20 Si 1.86810 * 119.99533 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46922 * 90.00130 * 20 18 16 22 22 H 1.48501 * 109.46818 * 209.99881 * 20 18 16 23 23 H 1.48495 * 109.47141 * 330.00015 * 20 18 16 24 24 C 1.46845 * 111.00197 * 164.20206 * 10 9 8 25 25 H 1.08991 * 109.47072 * 59.99530 * 1 2 3 26 26 H 1.08998 * 109.46930 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46794 * 299.99967 * 1 2 3 28 28 H 1.08006 * 120.04097 * 0.02562 * 4 3 2 29 29 H 1.08003 * 119.96357 * 180.02562 * 5 4 3 30 30 H 1.07998 * 119.92005 * 179.97438 * 6 5 4 31 31 H 1.08001 * 119.95996 * 179.97438 * 7 6 5 32 32 H 1.08996 * 109.47691 * 225.35068 * 9 8 7 33 33 H 1.09000 * 109.46963 * 345.35339 * 9 8 7 34 34 H 1.08998 * 109.45831 * 294.17437 * 11 10 9 35 35 H 1.08999 * 109.45673 * 54.14122 * 11 10 9 36 36 H 1.09001 * 109.50664 * 299.23883 * 12 11 10 37 37 H 1.08999 * 109.50233 * 179.11741 * 12 11 10 38 38 H 1.09000 * 109.52606 * 182.43846 * 13 12 11 39 39 H 1.08998 * 109.52281 * 62.24988 * 13 12 11 40 40 H 0.96999 * 120.00278 * 180.02562 * 19 18 16 41 41 H 1.09003 * 109.45929 * 305.85360 * 24 10 9 42 42 H 1.08996 * 109.46668 * 65.82423 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1953 2.6662 0.0005 5 6 1.5096 4.0105 0.0000 6 6 2.8330 4.4131 -0.0016 7 6 3.8456 3.4714 -0.0032 8 6 3.5387 2.1249 0.0036 9 6 4.6429 1.0994 0.0087 10 7 4.7524 0.5043 1.3473 11 6 5.3202 1.4625 2.3044 12 6 5.2845 0.8619 3.7116 13 6 6.0897 -0.4404 3.7259 14 6 5.5079 -1.4026 2.6866 15 1 4.4789 -1.6463 2.9512 16 6 6.3311 -2.6644 2.6527 17 1 6.8259 -2.9620 1.7401 18 6 6.4524 -3.4390 3.7869 19 7 5.8502 -3.0764 4.8984 20 14 7.4722 -5.0036 3.7447 21 1 8.8767 -4.6889 4.1102 22 1 6.9163 -5.9829 4.7127 23 1 7.4342 -5.5825 2.3777 24 6 5.5371 -0.7363 1.3092 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8901 28 1 0.1617 2.3526 0.0014 29 1 0.7213 4.7488 0.0008 30 1 3.0759 5.4654 -0.0024 31 1 4.8777 3.7893 -0.0049 32 1 4.4177 0.3192 -0.7184 33 1 5.5857 1.5794 -0.2537 34 1 6.3517 1.6824 2.0295 35 1 4.7358 2.3824 2.2872 36 1 4.2520 0.6545 3.9927 37 1 5.7203 1.5670 4.4193 38 1 6.0311 -0.8941 4.7153 39 1 7.1307 -0.2277 3.4829 40 1 5.9359 -3.6211 5.6964 41 1 5.1103 -1.4134 0.5692 42 1 6.5676 -0.5061 1.0389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595620360.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:00 Heat of formation + Delta-G solvation = 19.363403 kcal Electronic energy + Delta-G solvation = -21308.374026 eV Core-core repulsion = 18378.810597 eV Total energy + Delta-G solvation = -2929.563429 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.36996 -37.77382 -34.03423 -32.22707 -31.24670 -30.48525 -29.65670 -28.75600 -25.74901 -24.86299 -22.80754 -22.21578 -21.48022 -20.61557 -18.50166 -17.42929 -16.32944 -15.92509 -15.45404 -14.93778 -14.64475 -14.40650 -14.05980 -13.83669 -13.71906 -13.49779 -13.12001 -12.70613 -12.69755 -12.43026 -12.29335 -12.03796 -11.74260 -11.37879 -11.20136 -11.00278 -10.89929 -10.61146 -10.60522 -10.02927 -9.87531 -9.74528 -9.60921 -9.38810 -8.99944 -8.74167 -8.62139 -8.23473 -7.58521 -7.09136 -5.90886 -3.96625 1.30224 1.38765 1.74024 2.65184 3.34628 3.41364 3.44575 3.71264 4.46828 4.68094 4.86788 4.88748 5.05212 5.06372 5.11082 5.32735 5.39197 5.47626 5.59329 5.68076 5.70589 5.83216 5.89265 5.96444 6.08065 6.16830 6.30048 6.35801 6.45811 6.49774 6.57797 6.63403 6.81137 6.83741 6.94768 7.06210 7.31293 7.48022 7.76474 7.82182 7.90094 8.18209 8.25877 8.55984 9.07663 9.67179 11.15057 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021919 B = 0.004408 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.096468 B = 6350.959737 C = 7005.609351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 S -0.060 6.060 3 C -0.065 4.065 4 C -0.141 4.141 5 C -0.107 4.107 6 C -0.132 4.132 7 C -0.099 4.099 8 C -0.052 4.052 9 C 0.088 3.912 10 N -0.523 5.523 11 C 0.064 3.936 12 C -0.115 4.115 13 C -0.110 4.110 14 C 0.057 3.943 15 H 0.036 0.964 16 C -0.512 4.512 17 H 0.052 0.948 18 C 0.063 3.937 19 N -0.888 5.888 20 Si 0.888 3.112 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.070 3.930 25 H 0.076 0.924 26 H 0.105 0.895 27 H 0.080 0.920 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.083 0.917 33 H 0.038 0.962 34 H 0.020 0.980 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.043 0.957 38 H 0.089 0.911 39 H 0.028 0.972 40 H 0.258 0.742 41 H 0.059 0.941 42 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.832 12.972 -9.809 18.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.333 4.333 2 S 0.184 5.816 3 C -0.178 4.178 4 C -0.165 4.165 5 C -0.127 4.127 6 C -0.153 4.153 7 C -0.119 4.119 8 C -0.058 4.058 9 C -0.040 4.040 10 N -0.247 5.247 11 C -0.064 4.064 12 C -0.153 4.153 13 C -0.148 4.148 14 C 0.038 3.962 15 H 0.054 0.946 16 C -0.551 4.551 17 H 0.071 0.929 18 C -0.138 4.138 19 N -0.527 5.527 20 Si 0.716 3.284 21 H -0.209 1.209 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.056 4.056 25 H 0.095 0.905 26 H 0.123 0.877 27 H 0.099 0.901 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.101 0.899 33 H 0.056 0.944 34 H 0.038 0.962 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.108 0.892 39 H 0.047 0.953 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -8.696 11.658 -9.463 17.352 hybrid contribution 0.514 0.609 -0.180 0.817 sum -8.182 12.267 -9.643 17.618 Atomic orbital electron populations 1.23770 0.97864 1.06775 1.04883 1.86244 1.02716 1.01611 1.90992 1.21711 0.95819 0.97364 1.02937 1.21109 0.97994 0.93246 1.04198 1.20943 0.96462 0.95173 1.00086 1.21050 0.92813 0.99209 1.02206 1.21003 0.99273 0.92029 0.99609 1.19521 0.92660 0.94160 0.99491 1.21024 0.94301 0.95470 0.93239 1.61947 1.53008 1.05348 1.04390 1.22038 0.95906 0.94523 0.93916 1.21651 1.01381 0.98543 0.93755 1.21647 0.96020 0.92850 1.04261 1.18641 0.97386 0.92130 0.88013 0.94562 1.21158 1.30641 1.06853 0.96481 0.92928 1.24917 0.95679 0.97568 0.95606 1.69897 1.43439 1.38378 1.01010 0.86661 0.80391 0.83527 0.77787 1.20867 1.21304 1.19984 1.22315 0.92984 0.88681 1.01644 0.90531 0.87653 0.90056 0.86220 0.86284 0.86248 0.86033 0.89927 0.94431 0.96156 0.92508 0.92133 0.93791 0.89232 0.95323 0.93155 0.92202 0.96549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.15 101.05 0.92 -0.79 16 2 S -0.06 -0.89 20.95 -107.50 -2.25 -3.14 16 3 C -0.06 -0.94 6.11 -39.04 -0.24 -1.18 16 4 C -0.14 -1.75 9.36 -39.37 -0.37 -2.11 16 5 C -0.11 -1.18 10.04 -39.61 -0.40 -1.58 16 6 C -0.13 -1.48 10.04 -39.53 -0.40 -1.87 16 7 C -0.10 -1.26 9.03 -39.62 -0.36 -1.62 16 8 C -0.05 -0.76 4.67 -104.40 -0.49 -1.25 16 9 C 0.09 1.41 4.41 -4.98 -0.02 1.39 16 10 N -0.52 -9.87 4.41 -236.11 -1.04 -10.91 16 11 C 0.06 1.18 5.30 -3.83 -0.02 1.16 16 12 C -0.12 -2.35 6.09 -26.65 -0.16 -2.51 16 13 C -0.11 -2.65 5.03 -26.61 -0.13 -2.78 16 14 C 0.06 1.45 2.26 -91.69 -0.21 1.24 16 15 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 16 C -0.51 -14.19 8.56 -34.44 -0.29 -14.48 16 17 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 18 C 0.06 1.77 5.31 -17.82 -0.09 1.67 16 19 N -0.89 -25.62 11.36 55.43 0.63 -24.99 16 20 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 C 0.07 1.52 4.67 -3.83 -0.02 1.50 16 25 H 0.08 0.67 7.75 -51.93 -0.40 0.27 16 26 H 0.10 0.98 8.14 -51.92 -0.42 0.56 16 27 H 0.08 0.81 7.75 -51.92 -0.40 0.41 16 28 H 0.12 1.25 5.88 -52.48 -0.31 0.94 16 29 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 30 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.12 1.37 8.00 -52.49 -0.42 0.95 16 32 H 0.08 1.34 7.23 -51.93 -0.38 0.96 16 33 H 0.04 0.57 7.86 -51.93 -0.41 0.16 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.97 6.83 -51.93 -0.35 0.61 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.09 2.41 6.16 -51.93 -0.32 2.09 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.06 1.29 7.96 -51.93 -0.41 0.88 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 342.19 15.07 5.16 5.16 Total: -1.00 -29.28 342.19 -11.55 -40.83 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -6.75 Total: -0.18 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -2.28 Total: -23.21 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: -0.41 Total: -35.90 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -0.89 SS G_CDS: -2.25 Total: -3.14 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.28 -11.55 -40.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595620360.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.195 kcal (2) G-P(sol) polarization free energy of solvation -29.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds