Wall clock time and date at job start Tue Mar 31 2020 07:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76192 * 103.00008 * 2 1 4 4 C 1.38990 * 120.08360 * 0.02562 * 3 2 1 5 5 C 1.38061 * 119.92263 * 180.02562 * 4 3 2 6 6 C 1.38327 * 120.08187 * 0.02562 * 5 4 3 7 7 C 1.38280 * 120.15610 * 0.02562 * 6 5 4 8 8 C 1.38101 * 120.08231 * 359.67227 * 7 6 5 9 9 C 1.50702 * 120.04437 * 180.30088 * 8 7 6 10 10 N 1.46899 * 109.47278 * 105.34727 * 9 8 7 11 11 C 1.46855 * 111.00321 * 288.41113 * 10 9 8 12 12 C 1.53034 * 109.52495 * 174.15699 * 11 10 9 13 13 C 1.53120 * 109.27607 * 59.18028 * 12 11 10 14 14 C 1.53118 * 109.16297 * 302.34270 * 13 12 11 15 15 H 1.09000 * 109.53789 * 297.69673 * 14 13 12 16 16 C 1.50702 * 109.50525 * 177.59463 * 14 13 12 17 17 H 1.07997 * 120.00270 * 240.19885 * 16 14 13 18 18 C 1.37876 * 119.99471 * 60.20002 * 16 14 13 19 19 N 1.31511 * 120.00520 * 359.97438 * 18 16 14 20 20 Si 1.86810 * 119.99533 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46922 * 90.00130 * 20 18 16 22 22 H 1.48501 * 109.46818 * 209.99881 * 20 18 16 23 23 H 1.48495 * 109.47141 * 330.00015 * 20 18 16 24 24 C 1.46845 * 111.00197 * 164.20206 * 10 9 8 25 25 H 1.08991 * 109.47072 * 59.99530 * 1 2 3 26 26 H 1.08998 * 109.46930 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46794 * 299.99967 * 1 2 3 28 28 H 1.08006 * 120.04097 * 0.02562 * 4 3 2 29 29 H 1.08003 * 119.96357 * 180.02562 * 5 4 3 30 30 H 1.07998 * 119.92005 * 179.97438 * 6 5 4 31 31 H 1.08001 * 119.95996 * 179.97438 * 7 6 5 32 32 H 1.08996 * 109.47691 * 225.35068 * 9 8 7 33 33 H 1.09000 * 109.46963 * 345.35339 * 9 8 7 34 34 H 1.08998 * 109.45831 * 294.17437 * 11 10 9 35 35 H 1.08999 * 109.45673 * 54.14122 * 11 10 9 36 36 H 1.09001 * 109.50664 * 299.23883 * 12 11 10 37 37 H 1.08999 * 109.50233 * 179.11741 * 12 11 10 38 38 H 1.09000 * 109.52606 * 182.43846 * 13 12 11 39 39 H 1.08998 * 109.52281 * 62.24988 * 13 12 11 40 40 H 0.96999 * 120.00278 * 180.02562 * 19 18 16 41 41 H 1.09003 * 109.45929 * 305.85360 * 24 10 9 42 42 H 1.08996 * 109.46668 * 65.82423 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1953 2.6662 0.0005 5 6 1.5096 4.0105 0.0000 6 6 2.8330 4.4131 -0.0016 7 6 3.8456 3.4714 -0.0032 8 6 3.5387 2.1249 0.0036 9 6 4.6429 1.0994 0.0087 10 7 4.7524 0.5043 1.3473 11 6 5.3202 1.4625 2.3044 12 6 5.2845 0.8619 3.7116 13 6 6.0897 -0.4404 3.7259 14 6 5.5079 -1.4026 2.6866 15 1 4.4789 -1.6463 2.9512 16 6 6.3311 -2.6644 2.6527 17 1 6.8259 -2.9620 1.7401 18 6 6.4524 -3.4390 3.7869 19 7 5.8502 -3.0764 4.8984 20 14 7.4722 -5.0036 3.7447 21 1 8.8767 -4.6889 4.1102 22 1 6.9163 -5.9829 4.7127 23 1 7.4342 -5.5825 2.3777 24 6 5.5371 -0.7363 1.3092 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8901 28 1 0.1617 2.3526 0.0014 29 1 0.7213 4.7488 0.0008 30 1 3.0759 5.4654 -0.0024 31 1 4.8777 3.7893 -0.0049 32 1 4.4177 0.3192 -0.7184 33 1 5.5857 1.5794 -0.2537 34 1 6.3517 1.6824 2.0295 35 1 4.7358 2.3824 2.2872 36 1 4.2520 0.6545 3.9927 37 1 5.7203 1.5670 4.4193 38 1 6.0311 -0.8941 4.7153 39 1 7.1307 -0.2277 3.4829 40 1 5.9359 -3.6211 5.6964 41 1 5.1103 -1.4134 0.5692 42 1 6.5676 -0.5061 1.0389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595620360.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:56 Heat of formation + Delta-G solvation = 4.330974 kcal Electronic energy + Delta-G solvation = -21309.025881 eV Core-core repulsion = 18378.810597 eV Total energy + Delta-G solvation = -2930.215284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -40.50510 -39.24315 -35.75805 -33.95069 -32.19988 -31.86683 -31.44487 -29.60821 -27.06106 -26.88925 -23.90372 -23.63068 -23.10774 -21.87680 -20.31749 -18.53420 -18.26351 -16.97520 -16.82506 -16.38280 -16.30974 -15.61854 -15.34620 -15.00186 -14.83547 -14.75417 -14.61286 -14.37533 -14.09395 -13.66706 -13.49687 -13.35355 -13.25096 -12.83539 -12.75094 -12.58592 -12.52241 -12.22168 -11.96635 -11.81795 -11.70148 -11.36880 -10.93244 -10.79199 -10.64507 -10.54020 -10.34917 -9.74080 -9.07015 -8.19914 -8.05173 -6.19299 0.35882 0.44338 0.76110 1.41881 1.42426 1.52893 1.69744 2.44358 2.74079 3.21542 3.27878 3.84106 3.92434 4.18637 4.21848 4.26374 4.29403 4.30857 4.37417 4.42905 4.54386 4.61202 4.66035 4.67324 4.78087 4.85702 4.90574 4.92449 4.99907 5.10349 5.13688 5.21137 5.40868 5.41312 5.52097 5.58915 5.63368 5.65908 5.99905 6.05977 6.16557 6.24435 6.37731 6.50032 6.93400 7.48249 8.99425 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021919 B = 0.004408 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.096468 B = 6350.959737 C = 7005.609351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.142 6.142 3 C -0.075 4.075 4 C -0.147 4.147 5 C -0.103 4.103 6 C -0.128 4.128 7 C -0.104 4.104 8 C -0.075 4.075 9 C 0.094 3.906 10 N -0.530 5.530 11 C 0.071 3.929 12 C -0.108 4.108 13 C -0.101 4.101 14 C 0.058 3.942 15 H -0.005 1.005 16 C -0.535 4.535 17 H 0.050 0.950 18 C 0.015 3.985 19 N -0.915 5.915 20 Si 0.953 3.047 21 H -0.275 1.275 22 H -0.283 1.283 23 H -0.269 1.269 24 C 0.087 3.913 25 H 0.095 0.905 26 H 0.114 0.886 27 H 0.087 0.913 28 H 0.137 0.863 29 H 0.151 0.849 30 H 0.150 0.850 31 H 0.135 0.865 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.027 0.973 35 H 0.078 0.922 36 H 0.045 0.955 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.023 0.977 40 H 0.260 0.740 41 H 0.051 0.949 42 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.372 15.172 -10.658 20.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.102 5.898 3 C -0.188 4.188 4 C -0.171 4.171 5 C -0.123 4.123 6 C -0.149 4.149 7 C -0.124 4.124 8 C -0.082 4.082 9 C -0.033 4.033 10 N -0.254 5.254 11 C -0.056 4.056 12 C -0.145 4.145 13 C -0.140 4.140 14 C 0.039 3.961 15 H 0.013 0.987 16 C -0.574 4.574 17 H 0.068 0.932 18 C -0.183 4.183 19 N -0.555 5.555 20 Si 0.779 3.221 21 H -0.201 1.201 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.040 4.040 25 H 0.114 0.886 26 H 0.132 0.868 27 H 0.106 0.894 28 H 0.154 0.846 29 H 0.169 0.831 30 H 0.168 0.832 31 H 0.153 0.847 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.045 0.955 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.042 0.958 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -9.237 13.878 -10.326 19.610 hybrid contribution 0.585 -0.013 0.069 0.589 sum -8.652 13.865 -10.257 19.295 Atomic orbital electron populations 1.23761 0.93608 1.07790 1.06083 1.86439 1.07654 1.04084 1.91592 1.21738 0.96420 0.96541 1.04105 1.21407 0.98393 0.93616 1.03730 1.21370 0.97471 0.95143 0.98286 1.21439 0.92461 1.00456 1.00543 1.21222 1.00621 0.91325 0.99265 1.19482 0.92256 0.94646 1.01767 1.20958 0.95579 0.95701 0.91094 1.61840 1.52263 1.04793 1.06475 1.21975 0.96690 0.94743 0.92220 1.21549 0.99769 0.97135 0.96091 1.21443 0.96227 0.94421 1.01880 1.18522 0.94562 0.92412 0.90576 0.98690 1.21518 1.31093 1.08202 0.96553 0.93182 1.25696 0.96743 1.00684 0.95206 1.70043 1.44448 1.39496 1.01504 0.85639 0.78911 0.79632 0.77958 1.20103 1.20891 1.19362 1.21939 0.93182 0.89998 0.98919 0.88567 0.86765 0.89440 0.84567 0.83129 0.83224 0.84683 0.90917 0.93365 0.95468 0.90390 0.93646 0.91401 0.92460 0.95838 0.93128 0.93009 0.96780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.15 113.37 1.04 -1.80 16 2 S -0.14 -4.26 20.95 -56.49 -1.18 -5.44 16 3 C -0.07 -2.09 6.11 22.62 0.14 -1.95 16 4 C -0.15 -3.28 9.36 22.41 0.21 -3.07 16 5 C -0.10 -1.89 10.04 22.25 0.22 -1.66 16 6 C -0.13 -2.37 10.04 22.30 0.22 -2.15 16 7 C -0.10 -2.37 9.03 22.25 0.20 -2.17 16 8 C -0.08 -2.13 4.67 -19.72 -0.09 -2.22 16 9 C 0.09 3.00 4.41 85.56 0.38 3.38 16 10 N -0.53 -20.16 4.41 -900.92 -3.97 -24.13 16 11 C 0.07 2.55 5.30 86.32 0.46 3.00 16 12 C -0.11 -4.38 6.09 30.65 0.19 -4.19 16 13 C -0.10 -5.05 5.03 30.67 0.15 -4.90 16 14 C 0.06 3.08 2.26 -11.49 -0.03 3.05 16 15 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 16 C -0.54 -30.61 8.56 25.60 0.22 -30.39 16 17 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 18 C 0.02 0.88 5.31 84.65 0.45 1.32 16 19 N -0.92 -54.46 11.36 21.45 0.24 -54.22 16 20 Si 0.95 44.70 29.54 68.60 2.03 46.73 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 24 C 0.09 3.89 4.67 86.33 0.40 4.29 16 25 H 0.10 1.50 7.75 -2.39 -0.02 1.48 16 26 H 0.11 2.02 8.14 -2.39 -0.02 2.01 16 27 H 0.09 1.61 7.75 -2.39 -0.02 1.59 16 28 H 0.14 2.46 5.88 -2.91 -0.02 2.45 16 29 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 30 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 31 H 0.14 2.62 8.00 -2.91 -0.02 2.60 16 32 H 0.07 2.43 7.23 -2.39 -0.02 2.41 16 33 H 0.05 1.41 7.86 -2.39 -0.02 1.39 16 34 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.08 2.49 6.83 -2.39 -0.02 2.47 16 36 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.07 2.41 8.14 -2.39 -0.02 2.40 16 38 H 0.06 3.21 6.16 -2.39 -0.01 3.20 16 39 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 41 H 0.05 2.35 7.96 -2.39 -0.02 2.33 16 42 H 0.01 0.62 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -65.62 342.19 2.26 -63.37 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.98 Total: 13.15 kcal Atomic # 6 Polarization: -43.62 SS G_CDS: 4.16 Total: -39.45 kcal Atomic # 7 Polarization: -74.62 SS G_CDS: -3.73 Total: -78.35 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: -4.26 SS G_CDS: -1.18 Total: -5.44 kcal Total: -65.62 2.26 -63.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595620360.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.696 kcal (2) G-P(sol) polarization free energy of solvation -65.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds