Wall clock time and date at job start Tue Mar 31 2020 07:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81409 * 1 3 3 C 1.76205 * 102.99869 * 2 1 4 4 C 1.38997 * 120.07906 * 359.97438 * 3 2 1 5 5 C 1.38055 * 119.91900 * 180.02562 * 4 3 2 6 6 C 1.38331 * 120.08058 * 0.03155 * 5 4 3 7 7 C 1.38278 * 120.15936 * 359.69020 * 6 5 4 8 8 C 1.38110 * 120.08085 * 0.55827 * 7 6 5 9 9 C 1.50696 * 120.04059 * 179.74159 * 8 7 6 10 10 N 1.46896 * 109.47294 * 259.72516 * 9 8 7 11 11 C 1.46847 * 111.00067 * 293.95364 * 10 9 8 12 12 C 1.53038 * 109.52390 * 185.83855 * 11 10 9 13 13 C 1.53120 * 109.28065 * 300.82302 * 12 11 10 14 14 C 1.53119 * 109.15793 * 57.65412 * 13 12 11 15 15 H 1.08996 * 109.50606 * 62.32699 * 14 13 12 16 16 C 1.50702 * 109.50169 * 182.40723 * 14 13 12 17 17 H 1.07996 * 120.00131 * 114.44348 * 16 14 13 18 18 C 1.37882 * 119.99807 * 294.43486 * 16 14 13 19 19 N 1.31512 * 119.99849 * 161.78346 * 18 16 14 20 20 Si 1.86800 * 120.00107 * 341.78689 * 18 16 14 21 21 H 1.48494 * 109.47066 * 180.02562 * 20 18 16 22 22 H 1.48502 * 109.47295 * 59.99673 * 20 18 16 23 23 H 1.48505 * 109.46714 * 299.99597 * 20 18 16 24 24 C 1.46839 * 111.00306 * 58.16768 * 10 9 8 25 25 H 1.08998 * 109.46972 * 299.99958 * 1 2 3 26 26 H 1.09007 * 109.46661 * 60.00238 * 1 2 3 27 27 H 1.08995 * 109.47014 * 179.97438 * 1 2 3 28 28 H 1.08003 * 120.04269 * 0.04173 * 4 3 2 29 29 H 1.07994 * 119.96405 * 179.97438 * 5 4 3 30 30 H 1.08001 * 119.92138 * 179.97438 * 6 5 4 31 31 H 1.07999 * 119.96721 * 180.28059 * 7 6 5 32 32 H 1.09009 * 109.46924 * 139.72414 * 9 8 7 33 33 H 1.08997 * 109.47516 * 19.72806 * 9 8 7 34 34 H 1.09006 * 109.46324 * 65.82806 * 11 10 9 35 35 H 1.09001 * 109.46884 * 305.85658 * 11 10 9 36 36 H 1.09003 * 109.50443 * 180.88280 * 12 11 10 37 37 H 1.08995 * 109.50261 * 60.76867 * 12 11 10 38 38 H 1.09003 * 109.52289 * 297.74978 * 13 12 11 39 39 H 1.09000 * 109.57397 * 177.58923 * 13 12 11 40 40 H 0.97000 * 119.99868 * 354.67642 * 19 18 16 41 41 H 1.09006 * 109.46328 * 54.13885 * 24 10 9 42 42 H 1.09009 * 109.46232 * 294.17490 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1951 2.6662 -0.0005 5 6 1.5094 4.0105 -0.0011 6 6 2.8328 4.4132 -0.0017 7 6 3.8455 3.4716 0.0046 8 6 3.5387 2.1250 0.0000 9 6 4.6430 1.0996 0.0010 10 7 4.8384 0.5890 -1.3624 11 6 3.6624 -0.1646 -1.8157 12 6 3.9564 -0.8019 -3.1757 13 6 4.3019 0.2967 -4.1848 14 6 5.4996 1.0971 -3.6657 15 1 6.3661 0.4414 -3.5802 16 6 5.8094 2.2178 -4.6245 17 1 5.6852 3.2445 -4.3134 18 6 6.2515 1.9322 -5.8989 19 7 6.1821 2.8486 -6.8397 20 14 6.9489 0.2438 -6.2892 21 1 7.3509 0.1925 -7.7178 22 1 5.9164 -0.7909 -6.0274 23 1 8.1346 -0.0121 -5.4324 24 6 5.1609 1.6794 -2.2916 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 0.1617 2.3526 -0.0003 29 1 0.7212 4.7487 -0.0019 30 1 3.0758 5.4655 -0.0026 31 1 4.8776 3.7894 0.0087 32 1 4.3734 0.2760 0.6623 33 1 5.5663 1.5603 0.3523 34 1 2.8115 0.5106 -1.9075 35 1 3.4299 -0.9453 -1.0915 36 1 3.0779 -1.3482 -3.5191 37 1 4.7983 -1.4877 -3.0818 38 1 3.4461 0.9604 -4.3081 39 1 4.5539 -0.1549 -5.1443 40 1 5.7501 3.6979 -6.6585 41 1 6.0168 2.2381 -1.9128 42 1 4.3030 2.3460 -2.3811 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595620361.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:11 Heat of formation + Delta-G solvation = 27.816282 kcal Electronic energy + Delta-G solvation = -21943.263612 eV Core-core repulsion = 19014.066727 eV Total energy + Delta-G solvation = -2929.196885 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.76810 -37.81352 -34.20344 -32.38186 -31.34190 -30.36387 -30.13311 -28.86360 -26.10336 -24.65064 -22.90052 -22.53706 -21.23268 -20.64071 -18.75668 -17.51593 -17.33320 -16.15483 -15.56374 -15.23531 -14.69277 -14.35540 -14.14199 -14.02815 -13.77467 -13.66822 -13.33715 -12.85857 -12.69680 -12.52828 -12.42285 -12.06974 -11.92746 -11.74387 -11.48807 -11.18408 -10.89786 -10.53697 -10.50891 -10.29388 -9.89009 -9.72411 -9.54526 -9.41209 -9.10721 -8.79134 -8.63321 -8.17042 -7.88796 -7.07460 -6.36151 -3.97395 1.21837 1.34912 1.52549 2.37465 3.47347 3.52061 3.68357 3.70011 4.54477 4.59270 4.77863 4.85525 4.91944 4.95331 5.01310 5.28788 5.32648 5.39014 5.49040 5.57491 5.66688 5.73611 5.77720 5.94469 6.00242 6.05138 6.22622 6.23582 6.32459 6.43687 6.44931 6.51211 6.56620 6.65476 6.78169 6.90946 6.96170 7.04531 7.40564 7.56563 7.69125 7.74939 8.30250 8.45630 8.98076 9.69341 11.01453 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019381 B = 0.005528 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.393283 B = 5063.976950 C = 5728.230208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 S -0.086 6.086 3 C -0.083 4.083 4 C -0.134 4.134 5 C -0.107 4.107 6 C -0.123 4.123 7 C -0.088 4.088 8 C -0.093 4.093 9 C 0.087 3.913 10 N -0.528 5.528 11 C 0.056 3.944 12 C -0.117 4.117 13 C -0.123 4.123 14 C 0.027 3.973 15 H 0.028 0.972 16 C -0.596 4.596 17 H 0.053 0.947 18 C 0.034 3.966 19 N -0.910 5.910 20 Si 1.041 2.959 21 H -0.289 1.289 22 H -0.272 1.272 23 H -0.284 1.284 24 C 0.077 3.923 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.046 0.954 39 H 0.059 0.941 40 H 0.266 0.734 41 H 0.060 0.940 42 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.781 -3.537 16.290 19.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.340 4.340 2 S 0.158 5.842 3 C -0.196 4.196 4 C -0.158 4.158 5 C -0.127 4.127 6 C -0.143 4.143 7 C -0.108 4.108 8 C -0.101 4.101 9 C -0.041 4.041 10 N -0.250 5.250 11 C -0.073 4.073 12 C -0.155 4.155 13 C -0.161 4.161 14 C 0.007 3.993 15 H 0.046 0.954 16 C -0.634 4.634 17 H 0.071 0.929 18 C -0.171 4.171 19 N -0.544 5.544 20 Si 0.870 3.130 21 H -0.216 1.216 22 H -0.199 1.199 23 H -0.210 1.210 24 C -0.050 4.050 25 H 0.094 0.906 26 H 0.100 0.900 27 H 0.121 0.879 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.145 0.855 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -9.052 -5.847 15.097 18.549 hybrid contribution -2.438 2.822 1.214 3.922 sum -11.490 -3.025 16.311 20.180 Atomic orbital electron populations 1.23844 0.98548 1.06534 1.05066 1.86301 1.03620 1.02654 1.91642 1.21660 0.96068 0.96704 1.05214 1.21082 0.97904 0.93283 1.03527 1.20986 0.96611 0.95174 0.99891 1.21170 0.92814 0.99605 1.00744 1.21070 0.99626 0.91895 0.98254 1.20453 0.93618 0.95946 1.00102 1.21354 0.95071 0.94804 0.92883 1.62469 1.36347 1.25367 1.00860 1.22610 0.91129 0.97125 0.96473 1.21675 1.00245 0.98753 0.94876 1.22093 1.00087 0.96132 0.97766 1.18994 0.93376 0.95740 0.91158 0.95408 1.21956 1.49909 0.92830 0.98676 0.92923 1.25716 0.94799 1.04382 0.92173 1.70845 1.41751 1.07805 1.33959 0.84119 0.77211 0.75934 0.75744 1.21551 1.19894 1.20989 1.22109 0.98600 0.91079 0.93215 0.90563 0.89964 0.87871 0.86178 0.86064 0.85922 0.85522 0.90089 0.89832 0.93509 0.90807 0.92994 0.92174 0.93551 0.92247 0.92419 0.92180 0.95541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 9.15 101.05 0.92 -0.66 16 2 S -0.09 -1.09 15.57 -107.50 -1.67 -2.76 16 3 C -0.08 -1.19 5.10 -39.04 -0.20 -1.39 16 4 C -0.13 -1.73 9.36 -39.37 -0.37 -2.10 16 5 C -0.11 -1.31 10.04 -39.61 -0.40 -1.71 16 6 C -0.12 -1.59 10.04 -39.53 -0.40 -1.99 16 7 C -0.09 -1.26 8.85 -39.61 -0.35 -1.61 16 8 C -0.09 -1.40 3.96 -104.41 -0.41 -1.82 16 9 C 0.09 1.33 5.36 -4.98 -0.03 1.30 16 10 N -0.53 -9.60 4.86 -236.11 -1.15 -10.75 16 11 C 0.06 0.96 3.42 -3.83 -0.01 0.95 16 12 C -0.12 -2.19 6.09 -26.65 -0.16 -2.35 16 13 C -0.12 -2.78 4.97 -26.61 -0.13 -2.91 16 14 C 0.03 0.65 1.84 -91.69 -0.17 0.48 16 15 H 0.03 0.70 6.79 -51.93 -0.35 0.35 16 16 C -0.60 -16.96 8.82 -34.44 -0.30 -17.26 16 17 H 0.05 1.61 7.99 -52.49 -0.42 1.19 16 18 C 0.03 0.99 5.34 -17.82 -0.10 0.89 16 19 N -0.91 -28.32 13.70 55.43 0.76 -27.56 16 20 Si 1.04 25.78 26.42 -169.99 -4.49 21.29 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.27 -6.25 5.57 56.52 0.32 -5.94 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 24 C 0.08 1.63 4.00 -3.84 -0.02 1.62 16 25 H 0.08 0.62 7.75 -51.93 -0.40 0.22 16 26 H 0.08 0.76 7.75 -51.92 -0.40 0.36 16 27 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.12 1.29 5.88 -52.48 -0.31 0.98 16 29 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 30 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 31 H 0.13 1.68 8.03 -52.49 -0.42 1.26 16 32 H 0.08 1.15 7.18 -51.92 -0.37 0.77 16 33 H 0.08 1.18 8.00 -51.93 -0.42 0.77 16 34 H 0.05 0.85 5.19 -37.45 -0.19 0.65 16 35 H 0.07 1.16 5.90 -33.92 -0.20 0.96 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.06 1.40 4.86 -51.93 -0.25 1.15 16 40 H 0.27 8.26 8.73 -40.82 -0.36 7.91 16 41 H 0.06 1.28 8.12 -51.93 -0.42 0.85 16 42 H 0.03 0.60 6.89 -51.92 -0.36 0.24 16 LS Contribution 324.42 15.07 4.89 4.89 Total: -1.00 -31.00 324.42 -10.08 -41.08 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -6.30 Total: 2.36 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: -2.12 Total: -28.55 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: -0.39 Total: -38.31 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -4.49 Total: 21.29 kcal Atomic # 16 Polarization: -1.09 SS G_CDS: -1.67 Total: -2.76 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.00 -10.08 -41.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595620361.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.900 kcal (2) G-P(sol) polarization free energy of solvation -31.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds