Wall clock time and date at job start Tue Mar 31 2020 08:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99963 * 2 1 4 4 H 1.48502 * 109.47011 * 269.99840 * 3 2 1 5 5 H 1.48490 * 109.47438 * 30.00422 * 3 2 1 6 6 H 1.48507 * 109.47044 * 150.00611 * 3 2 1 7 7 C 1.37882 * 119.99820 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99799 * 0.02562 * 7 2 1 9 9 C 1.50691 * 119.99917 * 179.97438 * 7 2 1 10 10 N 1.46906 * 109.47142 * 182.90717 * 9 7 2 11 11 C 1.46899 * 110.99971 * 202.22092 * 10 9 7 12 12 C 1.50704 * 109.47303 * 154.26272 * 11 10 9 13 13 C 1.38234 * 119.99892 * 297.43891 * 12 11 10 14 14 C 1.38230 * 120.00151 * 179.74070 * 13 12 11 15 15 C 1.38241 * 119.99675 * 0.52964 * 14 13 12 16 16 C 1.38234 * 119.99946 * 359.74738 * 15 14 13 17 17 C 1.38229 * 119.99974 * 117.71183 * 12 11 10 18 18 C 1.46895 * 110.99884 * 78.26743 * 10 9 7 19 19 C 1.52996 * 110.46082 * 308.21052 * 18 10 9 20 20 O 1.42892 * 109.47345 * 186.00388 * 19 18 10 21 21 C 1.54512 * 110.50806 * 185.60724 * 18 10 9 22 22 C 1.54479 * 104.06276 * 241.35360 * 21 18 10 23 23 O 1.44425 * 104.80335 * 23.98441 * 22 21 18 24 24 C 1.44782 * 105.29156 * 319.44836 * 23 22 21 25 25 H 0.97001 * 120.00064 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47258 * 302.90377 * 9 7 2 27 27 H 1.09001 * 109.47343 * 62.90643 * 9 7 2 28 28 H 1.08998 * 109.47689 * 274.26563 * 11 10 9 29 29 H 1.09010 * 109.47246 * 34.26730 * 11 10 9 30 30 H 1.08007 * 119.99937 * 359.97438 * 13 12 11 31 31 H 1.07993 * 120.00859 * 180.29594 * 14 13 12 32 32 H 1.07997 * 120.00267 * 179.77127 * 15 14 13 33 33 H 1.07994 * 120.00245 * 179.97438 * 16 15 14 34 34 H 1.08007 * 120.00106 * 359.97438 * 17 12 11 35 35 H 1.09001 * 109.47247 * 306.01073 * 19 18 10 36 36 H 1.09000 * 109.46834 * 66.00353 * 19 18 10 37 37 H 0.96703 * 113.99874 * 180.02562 * 20 19 18 38 38 H 1.09007 * 110.51185 * 0.02562 * 21 18 10 39 39 H 1.09005 * 110.50831 * 122.71078 * 21 18 10 40 40 H 1.09004 * 110.36912 * 142.81440 * 22 21 18 41 41 H 1.08993 * 110.37264 * 265.03508 * 22 21 18 42 42 H 1.09003 * 110.43012 * 281.78187 * 24 23 22 43 43 H 1.09001 * 110.48748 * 159.32758 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5774 -0.0719 11 6 5.3737 -2.6769 0.4419 12 6 5.6213 -4.0752 0.9463 13 6 4.8800 -4.5702 2.0028 14 6 5.1033 -5.8547 2.4620 15 6 6.0755 -6.6405 1.8718 16 6 6.8207 -6.1435 0.8190 17 6 6.5935 -4.8609 0.3561 18 6 3.9131 -3.0975 -1.4428 19 6 2.5045 -2.8918 -2.0035 20 8 2.4021 -3.5272 -3.2793 21 6 4.2975 -4.5936 -1.4800 22 6 5.5349 -4.6404 -2.4035 23 8 6.0976 -3.3121 -2.3341 24 6 4.9615 -2.4148 -2.3491 25 1 -0.4850 0.8400 0.0004 26 1 3.8745 -0.6357 -0.8640 27 1 3.8752 -0.7263 0.9137 28 1 6.0785 -2.4490 -0.3578 29 1 5.5086 -1.9671 1.2581 30 1 4.1236 -3.9546 2.4671 31 1 4.5209 -6.2432 3.2843 32 1 6.2526 -7.6428 2.2329 33 1 7.5806 -6.7571 0.3581 34 1 7.1754 -4.4727 -0.4669 35 1 1.7746 -3.3273 -1.3210 36 1 2.3089 -1.8250 -2.1121 37 1 1.5337 -3.4369 -3.6951 38 1 4.5523 -4.9474 -0.4809 39 1 3.4848 -5.1863 -1.9000 40 1 6.2524 -5.3759 -2.0395 41 1 5.2372 -4.8753 -3.4253 42 1 4.5747 -2.3076 -3.3625 43 1 5.2382 -1.4420 -1.9428 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599397431.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:37 Heat of formation + Delta-G solvation = -39.117455 kcal Electronic energy + Delta-G solvation = -25249.658066 eV Core-core repulsion = 21874.805845 eV Total energy + Delta-G solvation = -3374.852221 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -40.48395 -38.52806 -36.28080 -35.55854 -32.81188 -31.61386 -30.98484 -30.44350 -28.37930 -27.80255 -24.93109 -24.37358 -22.63553 -22.25249 -21.29872 -20.75612 -18.55148 -17.46811 -16.64549 -16.43860 -15.79397 -15.59680 -15.06485 -15.02584 -14.58491 -14.41703 -13.98496 -13.72752 -13.26616 -13.13823 -13.06017 -12.76419 -12.47685 -12.40351 -12.09924 -11.61540 -11.39365 -11.24810 -11.06347 -10.93043 -10.85734 -10.75258 -10.52177 -10.28788 -10.08696 -9.85253 -9.54514 -9.41783 -8.98682 -8.64603 -8.60617 -8.21740 -7.43791 -6.15938 -4.11938 1.63543 1.70222 3.19694 3.29014 3.30594 4.02061 4.26914 4.32168 4.46798 4.93293 5.09848 5.13468 5.17746 5.23453 5.31703 5.36155 5.45716 5.55192 5.61644 5.77602 5.82381 5.86896 5.94748 6.01402 6.04623 6.10643 6.14864 6.31606 6.37181 6.40301 6.53924 6.57505 6.65972 6.72291 6.78476 6.81594 6.87498 7.03745 7.09906 7.29705 7.51750 7.79024 7.90668 8.22181 8.53636 8.92329 9.44845 10.95833 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016939 B = 0.006328 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.577342 B = 4423.660058 C = 5085.540728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.869 3.131 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.509 4.509 8 H 0.088 0.912 9 C 0.154 3.846 10 N -0.504 5.504 11 C 0.074 3.926 12 C -0.054 4.054 13 C -0.096 4.096 14 C -0.126 4.126 15 C -0.132 4.132 16 C -0.131 4.131 17 C -0.117 4.117 18 C 0.103 3.897 19 C 0.094 3.906 20 O -0.592 6.592 21 C -0.153 4.153 22 C 0.049 3.951 23 O -0.381 6.381 24 C 0.021 3.979 25 H 0.264 0.736 26 H -0.009 1.009 27 H 0.030 0.970 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.127 0.873 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.125 0.875 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.376 0.624 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.053 0.947 42 H 0.066 0.934 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.431 -9.514 -1.174 14.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.696 3.304 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.547 4.547 8 H 0.105 0.895 9 C 0.028 3.972 10 N -0.228 5.228 11 C -0.053 4.053 12 C -0.055 4.055 13 C -0.114 4.114 14 C -0.144 4.144 15 C -0.150 4.150 16 C -0.149 4.149 17 C -0.135 4.135 18 C 0.012 3.988 19 C 0.017 3.983 20 O -0.397 6.397 21 C -0.191 4.191 22 C -0.028 4.028 23 O -0.300 6.300 24 C -0.057 4.057 25 H 0.074 0.926 26 H 0.008 0.992 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.145 0.855 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.143 0.857 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.222 0.778 38 H 0.116 0.884 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.800 -9.745 -0.723 14.565 hybrid contribution -0.029 1.588 -0.589 1.694 sum 10.772 -8.158 -1.312 13.576 Atomic orbital electron populations 1.69875 1.06035 1.26935 1.50623 1.24877 0.94698 0.98644 0.94971 0.86958 0.80471 0.84386 0.78576 1.20297 1.21111 1.19213 1.21121 0.88518 0.94817 1.50256 0.89462 1.20389 0.97433 0.83775 0.95610 1.62059 1.18721 1.23916 1.18115 1.21269 0.91323 0.93133 0.99587 1.19849 0.94790 0.96168 0.94712 1.21112 0.98607 0.95478 0.96240 1.21120 0.98336 0.94652 1.00286 1.21028 0.97176 0.99494 0.97318 1.21021 1.00212 0.95964 0.97699 1.21241 0.98398 0.94124 0.99785 1.22113 0.94483 0.94007 0.88152 1.22526 0.94722 0.98320 0.82752 1.86256 1.38046 1.79770 1.35602 1.23312 0.97702 0.96153 1.01887 1.23347 0.95283 0.85364 0.98789 1.89051 1.29515 1.16243 1.95160 1.24155 0.87017 0.94140 1.00437 0.92565 0.99164 0.95202 0.92040 0.90467 0.85512 0.86595 0.86895 0.86785 0.85704 0.91871 0.90282 0.77759 0.88417 0.90568 0.89867 0.92864 0.91545 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.69 13.96 55.43 0.77 -24.92 16 2 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 3 Si 0.87 20.36 27.41 -169.99 -4.66 15.70 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.06 6.63 56.52 0.37 -5.68 16 7 C -0.51 -13.08 7.02 -34.44 -0.24 -13.32 16 8 H 0.09 2.44 6.21 -52.49 -0.33 2.12 16 9 C 0.15 3.43 3.28 -4.98 -0.02 3.41 16 10 N -0.50 -9.86 4.21 -220.02 -0.93 -10.79 16 11 C 0.07 1.28 4.78 -4.97 -0.02 1.26 16 12 C -0.05 -0.85 3.12 -104.63 -0.33 -1.18 16 13 C -0.10 -1.48 9.39 -39.59 -0.37 -1.85 16 14 C -0.13 -1.68 10.05 -39.58 -0.40 -2.08 16 15 C -0.13 -1.61 10.05 -39.58 -0.40 -2.01 16 16 C -0.13 -1.63 10.05 -39.58 -0.40 -2.02 16 17 C -0.12 -1.64 6.30 -39.59 -0.25 -1.89 16 18 C 0.10 1.91 0.62 -130.04 -0.08 1.83 16 19 C 0.09 1.83 4.43 37.16 0.16 2.00 16 20 O -0.59 -10.04 12.06 -35.23 -0.42 -10.46 16 21 C -0.15 -2.56 5.35 -25.16 -0.13 -2.69 16 22 C 0.05 0.74 6.38 37.93 0.24 0.98 16 23 O -0.38 -6.42 9.31 -35.23 -0.33 -6.75 16 24 C 0.02 0.37 5.53 37.93 0.21 0.58 16 25 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 26 H -0.01 -0.21 5.65 -51.93 -0.29 -0.50 16 27 H 0.03 0.68 6.74 -51.93 -0.35 0.33 16 28 H 0.06 1.06 4.75 -51.93 -0.25 0.81 16 29 H 0.08 1.32 7.45 -51.92 -0.39 0.93 16 30 H 0.13 2.06 8.06 -52.48 -0.42 1.64 16 31 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 32 H 0.11 1.12 8.06 -52.49 -0.42 0.69 16 33 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.13 1.75 6.07 -52.48 -0.32 1.43 16 35 H 0.06 1.36 6.65 -51.93 -0.35 1.01 16 36 H 0.08 1.74 6.13 -51.93 -0.32 1.42 16 37 H 0.38 4.96 9.12 45.56 0.42 5.37 16 38 H 0.10 1.66 3.74 -51.92 -0.19 1.47 16 39 H 0.08 1.31 7.21 -51.93 -0.37 0.93 16 40 H 0.08 1.11 6.59 -51.93 -0.34 0.77 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.07 1.20 7.41 -51.93 -0.38 0.81 16 43 H 0.09 1.57 6.08 -51.93 -0.32 1.25 16 LS Contribution 318.07 15.07 4.79 4.79 Total: -1.00 -28.37 318.07 -7.95 -36.32 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -5.06 Total: 11.31 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -2.12 Total: -15.20 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.15 Total: -35.71 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.75 Total: -17.21 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.66 Total: 15.70 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.37 -7.95 -36.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599397431.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.802 kcal (2) G-P(sol) polarization free energy of solvation -28.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds