Wall clock time and date at job start Tue Mar 31 2020 08:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99963 * 2 1 4 4 H 1.48502 * 109.47011 * 269.99840 * 3 2 1 5 5 H 1.48490 * 109.47438 * 30.00422 * 3 2 1 6 6 H 1.48507 * 109.47044 * 150.00611 * 3 2 1 7 7 C 1.37882 * 119.99820 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99799 * 0.02562 * 7 2 1 9 9 C 1.50691 * 119.99917 * 179.97438 * 7 2 1 10 10 N 1.46906 * 109.47142 * 182.90717 * 9 7 2 11 11 C 1.46899 * 110.99971 * 202.22092 * 10 9 7 12 12 C 1.50704 * 109.47303 * 154.26272 * 11 10 9 13 13 C 1.38234 * 119.99892 * 297.43891 * 12 11 10 14 14 C 1.38230 * 120.00151 * 179.74070 * 13 12 11 15 15 C 1.38241 * 119.99675 * 0.52964 * 14 13 12 16 16 C 1.38234 * 119.99946 * 359.74738 * 15 14 13 17 17 C 1.38229 * 119.99974 * 117.71183 * 12 11 10 18 18 C 1.46895 * 110.99884 * 78.26743 * 10 9 7 19 19 C 1.52996 * 110.46082 * 308.21052 * 18 10 9 20 20 O 1.42892 * 109.47345 * 186.00388 * 19 18 10 21 21 C 1.54512 * 110.50806 * 185.60724 * 18 10 9 22 22 C 1.54479 * 104.06276 * 241.35360 * 21 18 10 23 23 O 1.44425 * 104.80335 * 23.98441 * 22 21 18 24 24 C 1.44782 * 105.29156 * 319.44836 * 23 22 21 25 25 H 0.97001 * 120.00064 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47258 * 302.90377 * 9 7 2 27 27 H 1.09001 * 109.47343 * 62.90643 * 9 7 2 28 28 H 1.08998 * 109.47689 * 274.26563 * 11 10 9 29 29 H 1.09010 * 109.47246 * 34.26730 * 11 10 9 30 30 H 1.08007 * 119.99937 * 359.97438 * 13 12 11 31 31 H 1.07993 * 120.00859 * 180.29594 * 14 13 12 32 32 H 1.07997 * 120.00267 * 179.77127 * 15 14 13 33 33 H 1.07994 * 120.00245 * 179.97438 * 16 15 14 34 34 H 1.08007 * 120.00106 * 359.97438 * 17 12 11 35 35 H 1.09001 * 109.47247 * 306.01073 * 19 18 10 36 36 H 1.09000 * 109.46834 * 66.00353 * 19 18 10 37 37 H 0.96703 * 113.99874 * 180.02562 * 20 19 18 38 38 H 1.09007 * 110.51185 * 0.02562 * 21 18 10 39 39 H 1.09005 * 110.50831 * 122.71078 * 21 18 10 40 40 H 1.09004 * 110.36912 * 142.81440 * 22 21 18 41 41 H 1.08993 * 110.37264 * 265.03508 * 22 21 18 42 42 H 1.09003 * 110.43012 * 281.78187 * 24 23 22 43 43 H 1.09001 * 110.48748 * 159.32758 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5774 -0.0719 11 6 5.3737 -2.6769 0.4419 12 6 5.6213 -4.0752 0.9463 13 6 4.8800 -4.5702 2.0028 14 6 5.1033 -5.8547 2.4620 15 6 6.0755 -6.6405 1.8718 16 6 6.8207 -6.1435 0.8190 17 6 6.5935 -4.8609 0.3561 18 6 3.9131 -3.0975 -1.4428 19 6 2.5045 -2.8918 -2.0035 20 8 2.4021 -3.5272 -3.2793 21 6 4.2975 -4.5936 -1.4800 22 6 5.5349 -4.6404 -2.4035 23 8 6.0976 -3.3121 -2.3341 24 6 4.9615 -2.4148 -2.3491 25 1 -0.4850 0.8400 0.0004 26 1 3.8745 -0.6357 -0.8640 27 1 3.8752 -0.7263 0.9137 28 1 6.0785 -2.4490 -0.3578 29 1 5.5086 -1.9671 1.2581 30 1 4.1236 -3.9546 2.4671 31 1 4.5209 -6.2432 3.2843 32 1 6.2526 -7.6428 2.2329 33 1 7.5806 -6.7571 0.3581 34 1 7.1754 -4.4727 -0.4669 35 1 1.7746 -3.3273 -1.3210 36 1 2.3089 -1.8250 -2.1121 37 1 1.5337 -3.4369 -3.6951 38 1 4.5523 -4.9474 -0.4809 39 1 3.4848 -5.1863 -1.9000 40 1 6.2524 -5.3759 -2.0395 41 1 5.2372 -4.8753 -3.4253 42 1 4.5747 -2.3076 -3.3625 43 1 5.2382 -1.4420 -1.9428 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599397431.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:34 Heat of formation + Delta-G solvation = -59.444637 kcal Electronic energy + Delta-G solvation = -25250.539518 eV Core-core repulsion = 21874.805845 eV Total energy + Delta-G solvation = -3375.733673 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -41.85488 -39.66552 -37.74399 -37.04360 -34.72793 -32.92295 -32.35834 -31.58966 -29.92870 -29.33213 -26.47004 -25.81103 -24.13999 -23.31298 -22.91636 -21.93023 -20.05573 -19.20886 -18.27923 -17.55540 -17.24140 -16.97831 -16.61724 -16.35769 -15.91641 -15.70723 -15.59330 -15.27497 -14.69075 -14.49642 -14.47830 -14.10423 -13.98370 -13.76660 -13.44733 -13.24112 -12.92073 -12.72791 -12.58887 -12.40201 -12.23501 -12.10452 -11.86916 -11.80904 -11.60045 -11.46684 -11.24062 -10.86719 -10.76831 -10.59611 -9.65662 -9.33581 -8.98688 -8.24796 -6.23813 0.56993 0.64841 1.32659 1.36467 1.44299 2.34265 2.76344 2.98647 3.06984 3.13602 3.48932 3.76657 3.93975 4.03973 4.11775 4.25196 4.29284 4.32446 4.39099 4.44914 4.50282 4.59354 4.64086 4.68700 4.72679 4.79752 4.84060 4.87173 4.93672 4.98851 5.13374 5.15835 5.24985 5.30983 5.33337 5.55665 5.69568 5.73417 5.76250 5.89223 6.03858 6.25401 6.36867 6.60977 6.79809 6.89577 7.35937 8.90000 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016939 B = 0.006328 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.577342 B = 4423.660058 C = 5085.540728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.017 3.983 3 Si 0.928 3.072 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.253 1.253 7 C -0.498 4.498 8 H 0.053 0.947 9 C 0.163 3.837 10 N -0.514 5.514 11 C 0.078 3.922 12 C -0.070 4.070 13 C -0.116 4.116 14 C -0.130 4.130 15 C -0.126 4.126 16 C -0.125 4.125 17 C -0.119 4.119 18 C 0.099 3.901 19 C 0.110 3.890 20 O -0.586 6.586 21 C -0.147 4.147 22 C 0.053 3.947 23 O -0.380 6.380 24 C 0.027 3.973 25 H 0.265 0.735 26 H -0.007 1.007 27 H 0.028 0.972 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.132 0.868 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.128 0.872 35 H 0.034 0.966 36 H 0.050 0.950 37 H 0.393 0.607 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.109 0.891 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.113 -11.030 -1.530 17.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.181 4.181 3 Si 0.753 3.247 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.177 1.177 7 C -0.536 4.536 8 H 0.071 0.929 9 C 0.036 3.964 10 N -0.238 5.238 11 C -0.049 4.049 12 C -0.070 4.070 13 C -0.135 4.135 14 C -0.148 4.148 15 C -0.144 4.144 16 C -0.143 4.143 17 C -0.137 4.137 18 C 0.009 3.991 19 C 0.032 3.968 20 O -0.393 6.393 21 C -0.184 4.184 22 C -0.023 4.023 23 O -0.299 6.299 24 C -0.051 4.051 25 H 0.074 0.926 26 H 0.011 0.989 27 H 0.046 0.954 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.123 0.877 31 H 0.149 0.851 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.146 0.854 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.242 0.758 38 H 0.116 0.884 39 H 0.089 0.911 40 H 0.127 0.873 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 13.498 -11.280 -1.089 17.625 hybrid contribution -0.892 1.896 -0.482 2.150 sum 12.607 -9.384 -1.571 15.794 Atomic orbital electron populations 1.70013 1.07746 1.27742 1.52803 1.25611 0.95340 1.02138 0.95017 0.85999 0.79674 0.80105 0.78960 1.19523 1.21185 1.17682 1.21245 0.90344 0.93422 1.48636 0.92891 1.20154 0.95091 0.85743 0.95400 1.61973 1.20668 1.21994 1.19152 1.21254 0.89638 0.94658 0.99331 1.19707 0.96225 0.95550 0.95564 1.21061 0.98895 0.96573 0.96970 1.21342 0.98867 0.93846 1.00722 1.21401 0.95893 1.00527 0.96590 1.21375 1.00306 0.95354 0.97257 1.21274 0.97866 0.94727 0.99845 1.22146 0.93791 0.95545 0.87659 1.22082 0.95104 0.96297 0.83279 1.86226 1.39576 1.79178 1.34300 1.23258 0.98358 0.94380 1.02441 1.23447 0.95011 0.85044 0.98796 1.89051 1.28945 1.16809 1.95143 1.23991 0.87059 0.94116 0.99937 0.92632 0.98888 0.95408 0.91824 0.90967 0.87665 0.85052 0.83839 0.83727 0.85445 0.94732 0.93233 0.75847 0.88355 0.91148 0.87286 0.92230 0.91704 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.02 13.96 21.45 0.30 -55.72 16 2 C 0.02 0.92 5.47 84.66 0.46 1.38 16 3 Si 0.93 42.39 27.41 68.60 1.88 44.27 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.25 -10.87 6.63 99.48 0.66 -10.21 16 7 C -0.50 -26.59 7.02 25.60 0.18 -26.41 16 8 H 0.05 3.15 6.21 -2.91 -0.02 3.13 16 9 C 0.16 7.38 3.28 85.55 0.28 7.66 16 10 N -0.51 -20.39 4.21 -850.01 -3.58 -23.97 16 11 C 0.08 2.67 4.78 85.56 0.41 3.08 16 12 C -0.07 -2.11 3.12 -19.87 -0.06 -2.17 16 13 C -0.12 -3.54 9.39 22.27 0.21 -3.33 16 14 C -0.13 -3.20 10.05 22.27 0.22 -2.98 16 15 C -0.13 -2.61 10.05 22.27 0.22 -2.38 16 16 C -0.13 -2.60 10.05 22.27 0.22 -2.37 16 17 C -0.12 -3.00 6.30 22.27 0.14 -2.86 16 18 C 0.10 3.66 0.62 4.54 0.00 3.66 16 19 C 0.11 4.44 4.43 71.98 0.32 4.76 16 20 O -0.59 -19.73 12.06 -148.98 -1.80 -21.52 16 21 C -0.15 -4.73 5.35 31.61 0.17 -4.56 16 22 C 0.05 1.47 6.38 72.48 0.46 1.93 16 23 O -0.38 -11.97 9.31 -148.98 -1.39 -13.36 16 24 C 0.03 0.95 5.53 72.48 0.40 1.35 16 25 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 26 H -0.01 -0.29 5.65 -2.38 -0.01 -0.30 16 27 H 0.03 1.27 6.74 -2.39 -0.02 1.26 16 28 H 0.06 2.13 4.75 -2.39 -0.01 2.12 16 29 H 0.07 2.48 7.45 -2.38 -0.02 2.46 16 30 H 0.11 3.56 8.06 -2.91 -0.02 3.54 16 31 H 0.13 2.75 8.06 -2.91 -0.02 2.72 16 32 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 33 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 34 H 0.13 3.15 6.07 -2.91 -0.02 3.14 16 35 H 0.03 1.58 6.65 -2.39 -0.02 1.56 16 36 H 0.05 2.28 6.13 -2.39 -0.01 2.26 16 37 H 0.39 10.26 9.12 -74.06 -0.68 9.59 16 38 H 0.10 3.20 3.74 -2.38 -0.01 3.20 16 39 H 0.07 2.34 7.21 -2.38 -0.02 2.32 16 40 H 0.11 2.47 6.59 -2.38 -0.02 2.46 16 41 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.06 2.27 7.41 -2.39 -0.02 2.25 16 43 H 0.08 2.87 6.08 -2.39 -0.01 2.86 16 Total: -1.00 -62.28 318.07 -0.63 -62.90 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: 0.32 Total: 30.65 kcal Atomic # 6 Polarization: -26.89 SS G_CDS: 3.64 Total: -23.24 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -3.28 Total: -79.70 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -3.18 Total: -34.88 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.88 Total: 44.27 kcal Total: -62.28 -0.63 -62.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599397431.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.458 kcal (2) G-P(sol) polarization free energy of solvation -62.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds