Wall clock time and date at job start Tue Mar 31 2020 08:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00155 * 2 1 4 4 H 1.48497 * 109.47203 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47499 * 300.00130 * 3 2 1 6 6 H 1.48503 * 109.47256 * 60.00404 * 3 2 1 7 7 C 1.37872 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00454 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99976 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47346 * 178.26728 * 9 7 2 11 11 C 1.46899 * 111.00195 * 153.08373 * 10 9 7 12 12 C 1.50702 * 109.47015 * 205.07036 * 11 10 9 13 13 C 1.38236 * 119.99697 * 238.94290 * 12 11 10 14 14 C 1.38233 * 120.00021 * 179.76574 * 13 12 11 15 15 C 1.38237 * 119.99870 * 0.50922 * 14 13 12 16 16 C 1.38237 * 119.99632 * 359.74608 * 15 14 13 17 17 C 1.38231 * 120.00046 * 59.21656 * 12 11 10 18 18 C 1.46906 * 110.99675 * 277.03498 * 10 9 7 19 19 C 1.52999 * 110.45399 * 50.00231 * 18 10 9 20 20 O 1.42900 * 109.47145 * 177.71838 * 19 18 10 21 21 C 1.54505 * 110.50800 * 172.60514 * 18 10 9 22 22 C 1.54479 * 104.06315 * 118.78715 * 21 18 10 23 23 O 1.44426 * 104.89784 * 335.96120 * 22 21 18 24 24 C 1.44688 * 105.13836 * 40.49669 * 23 22 21 25 25 H 0.97005 * 119.99279 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47269 * 58.25735 * 9 7 2 27 27 H 1.09008 * 109.46891 * 298.26194 * 9 7 2 28 28 H 1.08997 * 109.46891 * 325.06915 * 11 10 9 29 29 H 1.08999 * 109.47369 * 85.06537 * 11 10 9 30 30 H 1.08008 * 120.00179 * 0.02562 * 13 12 11 31 31 H 1.07999 * 119.99947 * 180.23222 * 14 13 12 32 32 H 1.07997 * 119.99867 * 179.72434 * 15 14 13 33 33 H 1.08005 * 119.99780 * 179.97438 * 16 15 14 34 34 H 1.07996 * 120.00405 * 0.02562 * 17 12 11 35 35 H 1.09003 * 109.47310 * 297.72067 * 19 18 10 36 36 H 1.09000 * 109.47674 * 57.72180 * 19 18 10 37 37 H 0.96698 * 114.00694 * 179.97438 * 20 19 18 38 38 H 1.09001 * 110.51752 * 0.13884 * 21 18 10 39 39 H 1.09001 * 110.62673 * 237.48353 * 21 18 10 40 40 H 1.08996 * 110.37558 * 94.84807 * 22 21 18 41 41 H 1.08997 * 110.37211 * 217.07859 * 22 21 18 42 42 H 1.08993 * 110.35638 * 200.67206 * 24 23 22 43 43 H 1.09004 * 110.44542 * 78.40844 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2050 -3.6154 -0.0430 11 6 1.6340 -4.8197 0.5748 12 6 2.7475 -5.7051 1.0721 13 6 2.8677 -6.9975 0.5964 14 6 3.8919 -7.8081 1.0490 15 6 4.7896 -7.3299 1.9851 16 6 4.6661 -6.0393 2.4648 17 6 3.6451 -5.2269 2.0082 18 6 2.6383 -3.8854 -1.4205 19 6 3.0913 -2.5924 -2.1016 20 8 3.5575 -2.8865 -3.4200 21 6 3.7748 -4.9319 -1.4352 22 6 3.1915 -6.1081 -2.2492 23 8 1.7592 -5.9732 -2.1225 24 6 1.5027 -4.5531 -2.2272 25 1 -0.4849 0.8401 0.0004 26 1 0.6007 -2.5433 -0.8742 27 1 0.6482 -2.5707 0.9049 28 1 0.9975 -4.5319 1.4114 29 1 1.0417 -5.3607 -0.1631 30 1 2.1640 -7.3725 -0.1320 31 1 3.9881 -8.8165 0.6745 32 1 5.5871 -7.9647 2.3420 33 1 5.3673 -5.6657 3.1965 34 1 3.5483 -4.2188 2.3835 35 1 2.2523 -1.8988 -2.1592 36 1 3.8973 -2.1403 -1.5237 37 1 3.8610 -2.1114 -3.9121 38 1 4.0136 -5.2509 -0.4206 39 1 4.6608 -4.5297 -1.9265 40 1 3.4889 -6.0303 -3.2949 41 1 3.5215 -7.0592 -1.8314 42 1 0.5338 -4.3097 -1.7915 43 1 1.5399 -4.2353 -3.2693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599397432.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:44 Heat of formation + Delta-G solvation = -46.610832 kcal Electronic energy + Delta-G solvation = -25190.981856 eV Core-core repulsion = 21815.804698 eV Total energy + Delta-G solvation = -3375.177158 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.37480 -38.47227 -36.23597 -35.51826 -32.83908 -31.55000 -30.80725 -30.39624 -28.20544 -27.41746 -24.78523 -24.34946 -22.72814 -22.18290 -21.51967 -20.69675 -18.46570 -17.30694 -16.43099 -16.35072 -15.76308 -15.54662 -14.99706 -14.94683 -14.64104 -14.39986 -13.92050 -13.65498 -13.23982 -13.06436 -13.02024 -12.68749 -12.36249 -12.24208 -12.03611 -11.37712 -11.27605 -11.13255 -10.98687 -10.89940 -10.80333 -10.68041 -10.51051 -10.44515 -10.18771 -9.62040 -9.57403 -9.41725 -9.02082 -8.56111 -8.51098 -8.17041 -7.31297 -6.11924 -4.12709 1.69492 1.75098 3.22612 3.31893 3.34847 4.08016 4.31115 4.36306 4.56510 5.00085 5.15583 5.19891 5.23728 5.27759 5.35951 5.42604 5.52660 5.60126 5.65328 5.85088 5.89096 5.95225 6.03106 6.05452 6.11065 6.20160 6.24957 6.33461 6.39920 6.45717 6.56774 6.62761 6.71939 6.79556 6.84313 7.00412 7.15041 7.17862 7.23986 7.35475 7.73809 8.00658 8.06027 8.18088 8.40241 8.93834 9.50032 10.97597 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016970 B = 0.006104 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.564025 B = 4585.954840 C = 5323.233791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.503 4.503 8 H 0.067 0.933 9 C 0.184 3.816 10 N -0.513 5.513 11 C 0.077 3.923 12 C -0.052 4.052 13 C -0.117 4.117 14 C -0.131 4.131 15 C -0.134 4.134 16 C -0.128 4.128 17 C -0.096 4.096 18 C 0.104 3.896 19 C 0.091 3.909 20 O -0.588 6.588 21 C -0.151 4.151 22 C 0.050 3.950 23 O -0.379 6.379 24 C 0.023 3.977 25 H 0.261 0.739 26 H 0.002 0.998 27 H 0.029 0.971 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.124 0.876 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.127 0.873 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.374 0.626 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.051 0.949 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.141 -11.044 -1.146 13.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.542 4.542 8 H 0.085 0.915 9 C 0.060 3.940 10 N -0.238 5.238 11 C -0.050 4.050 12 C -0.053 4.053 13 C -0.135 4.135 14 C -0.149 4.149 15 C -0.152 4.152 16 C -0.146 4.146 17 C -0.115 4.115 18 C 0.013 3.987 19 C 0.014 3.986 20 O -0.393 6.393 21 C -0.189 4.189 22 C -0.027 4.027 23 O -0.298 6.298 24 C -0.056 4.056 25 H 0.071 0.929 26 H 0.019 0.981 27 H 0.047 0.953 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.142 0.858 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.145 0.855 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.220 0.780 38 H 0.114 0.886 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.066 -11.538 -0.653 13.545 hybrid contribution 0.010 1.565 -0.597 1.675 sum 7.077 -9.973 -1.250 12.292 Atomic orbital electron populations 1.69961 1.06015 1.26761 1.50749 1.24980 0.94815 0.99187 0.95614 0.86525 0.80105 0.83689 0.77639 1.19661 1.21130 1.20976 1.21235 0.93658 0.89522 1.49770 0.91528 1.19937 0.89939 0.87445 0.96697 1.62215 1.42400 1.05034 1.14126 1.21244 0.93480 0.91333 0.98986 1.19917 0.96591 0.93738 0.95055 1.21213 0.98499 0.93955 0.99837 1.21018 0.95987 0.99418 0.98456 1.21008 0.99555 0.96103 0.98551 1.21112 0.98663 0.94279 1.00515 1.21116 0.94103 0.99800 0.96444 1.22068 0.93595 0.94147 0.88870 1.22418 0.99804 0.95280 0.81107 1.86296 1.86148 1.37907 1.28973 1.23263 0.98295 0.94996 1.02335 1.23304 0.81549 0.98946 0.98876 1.89058 1.22442 1.24165 1.94156 1.24094 0.99989 0.80911 1.00568 0.92893 0.98055 0.95271 0.90369 0.92273 0.85827 0.86872 0.87003 0.86722 0.85477 0.90155 0.92529 0.77963 0.88621 0.90954 0.93035 0.90016 0.89431 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.08 13.29 55.43 0.74 -24.34 16 2 C 0.06 1.47 5.46 -17.82 -0.10 1.37 16 3 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.50 -12.83 6.67 -34.44 -0.23 -13.06 16 8 H 0.07 1.70 6.49 -52.49 -0.34 1.36 16 9 C 0.18 4.39 4.16 -4.97 -0.02 4.37 16 10 N -0.51 -10.29 4.13 -220.02 -0.91 -11.20 16 11 C 0.08 1.39 4.78 -4.98 -0.02 1.37 16 12 C -0.05 -0.84 3.07 -104.62 -0.32 -1.16 16 13 C -0.12 -1.69 6.39 -39.58 -0.25 -1.94 16 14 C -0.13 -1.67 10.05 -39.58 -0.40 -2.07 16 15 C -0.13 -1.68 10.05 -39.58 -0.40 -2.08 16 16 C -0.13 -1.74 10.05 -39.58 -0.40 -2.13 16 17 C -0.10 -1.52 9.08 -39.59 -0.36 -1.88 16 18 C 0.10 1.95 0.60 -130.04 -0.08 1.87 16 19 C 0.09 1.74 4.52 37.16 0.17 1.91 16 20 O -0.59 -9.70 12.07 -35.23 -0.43 -10.12 16 21 C -0.15 -2.55 5.38 -25.17 -0.14 -2.69 16 22 C 0.05 0.78 6.40 37.93 0.24 1.02 16 23 O -0.38 -6.60 9.25 -35.23 -0.33 -6.92 16 24 C 0.02 0.42 5.45 37.93 0.21 0.62 16 25 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.00 0.04 6.29 -51.93 -0.33 -0.28 16 27 H 0.03 0.75 7.39 -51.92 -0.38 0.37 16 28 H 0.08 1.44 7.41 -51.93 -0.38 1.05 16 29 H 0.06 1.08 4.72 -51.93 -0.25 0.83 16 30 H 0.12 1.80 6.57 -52.48 -0.35 1.46 16 31 H 0.11 1.20 8.06 -52.49 -0.42 0.77 16 32 H 0.11 1.14 8.06 -52.49 -0.42 0.71 16 33 H 0.11 1.34 8.06 -52.48 -0.42 0.91 16 34 H 0.13 2.13 8.06 -52.49 -0.42 1.70 16 35 H 0.08 1.75 5.94 -51.93 -0.31 1.44 16 36 H 0.06 1.13 7.00 -51.93 -0.36 0.77 16 37 H 0.37 4.59 9.12 45.56 0.42 5.00 16 38 H 0.10 1.65 3.86 -51.93 -0.20 1.45 16 39 H 0.07 1.23 7.36 -51.93 -0.38 0.84 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 1.13 6.86 -51.93 -0.36 0.78 16 42 H 0.09 1.71 6.18 -51.93 -0.32 1.39 16 43 H 0.06 1.21 7.26 -51.93 -0.38 0.83 16 LS Contribution 322.81 15.07 4.86 4.86 Total: -1.00 -28.02 322.81 -8.34 -36.36 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -5.17 Total: 10.44 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -2.09 Total: -14.48 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: -0.17 Total: -35.54 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.75 Total: -17.05 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.02 -8.34 -36.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599397432.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.255 kcal (2) G-P(sol) polarization free energy of solvation -28.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds