Wall clock time and date at job start Tue Mar 31 2020 08:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00155 * 2 1 4 4 H 1.48497 * 109.47203 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47499 * 300.00130 * 3 2 1 6 6 H 1.48503 * 109.47256 * 60.00404 * 3 2 1 7 7 C 1.37872 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00454 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99976 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47346 * 178.26728 * 9 7 2 11 11 C 1.46899 * 111.00195 * 153.08373 * 10 9 7 12 12 C 1.50702 * 109.47015 * 205.07036 * 11 10 9 13 13 C 1.38236 * 119.99697 * 238.94290 * 12 11 10 14 14 C 1.38233 * 120.00021 * 179.76574 * 13 12 11 15 15 C 1.38237 * 119.99870 * 0.50922 * 14 13 12 16 16 C 1.38237 * 119.99632 * 359.74608 * 15 14 13 17 17 C 1.38231 * 120.00046 * 59.21656 * 12 11 10 18 18 C 1.46906 * 110.99675 * 277.03498 * 10 9 7 19 19 C 1.52999 * 110.45399 * 50.00231 * 18 10 9 20 20 O 1.42900 * 109.47145 * 177.71838 * 19 18 10 21 21 C 1.54505 * 110.50800 * 172.60514 * 18 10 9 22 22 C 1.54479 * 104.06315 * 118.78715 * 21 18 10 23 23 O 1.44426 * 104.89784 * 335.96120 * 22 21 18 24 24 C 1.44688 * 105.13836 * 40.49669 * 23 22 21 25 25 H 0.97005 * 119.99279 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47269 * 58.25735 * 9 7 2 27 27 H 1.09008 * 109.46891 * 298.26194 * 9 7 2 28 28 H 1.08997 * 109.46891 * 325.06915 * 11 10 9 29 29 H 1.08999 * 109.47369 * 85.06537 * 11 10 9 30 30 H 1.08008 * 120.00179 * 0.02562 * 13 12 11 31 31 H 1.07999 * 119.99947 * 180.23222 * 14 13 12 32 32 H 1.07997 * 119.99867 * 179.72434 * 15 14 13 33 33 H 1.08005 * 119.99780 * 179.97438 * 16 15 14 34 34 H 1.07996 * 120.00405 * 0.02562 * 17 12 11 35 35 H 1.09003 * 109.47310 * 297.72067 * 19 18 10 36 36 H 1.09000 * 109.47674 * 57.72180 * 19 18 10 37 37 H 0.96698 * 114.00694 * 179.97438 * 20 19 18 38 38 H 1.09001 * 110.51752 * 0.13884 * 21 18 10 39 39 H 1.09001 * 110.62673 * 237.48353 * 21 18 10 40 40 H 1.08996 * 110.37558 * 94.84807 * 22 21 18 41 41 H 1.08997 * 110.37211 * 217.07859 * 22 21 18 42 42 H 1.08993 * 110.35638 * 200.67206 * 24 23 22 43 43 H 1.09004 * 110.44542 * 78.40844 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2050 -3.6154 -0.0430 11 6 1.6340 -4.8197 0.5748 12 6 2.7475 -5.7051 1.0721 13 6 2.8677 -6.9975 0.5964 14 6 3.8919 -7.8081 1.0490 15 6 4.7896 -7.3299 1.9851 16 6 4.6661 -6.0393 2.4648 17 6 3.6451 -5.2269 2.0082 18 6 2.6383 -3.8854 -1.4205 19 6 3.0913 -2.5924 -2.1016 20 8 3.5575 -2.8865 -3.4200 21 6 3.7748 -4.9319 -1.4352 22 6 3.1915 -6.1081 -2.2492 23 8 1.7592 -5.9732 -2.1225 24 6 1.5027 -4.5531 -2.2272 25 1 -0.4849 0.8401 0.0004 26 1 0.6007 -2.5433 -0.8742 27 1 0.6482 -2.5707 0.9049 28 1 0.9975 -4.5319 1.4114 29 1 1.0417 -5.3607 -0.1631 30 1 2.1640 -7.3725 -0.1320 31 1 3.9881 -8.8165 0.6745 32 1 5.5871 -7.9647 2.3420 33 1 5.3673 -5.6657 3.1965 34 1 3.5483 -4.2188 2.3835 35 1 2.2523 -1.8988 -2.1592 36 1 3.8973 -2.1403 -1.5237 37 1 3.8610 -2.1114 -3.9121 38 1 4.0136 -5.2509 -0.4206 39 1 4.6608 -4.5297 -1.9265 40 1 3.4889 -6.0303 -3.2949 41 1 3.5215 -7.0592 -1.8314 42 1 0.5338 -4.3097 -1.7915 43 1 1.5399 -4.2353 -3.2693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599397432.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:43 Heat of formation + Delta-G solvation = -65.887537 kcal Electronic energy + Delta-G solvation = -25191.817756 eV Core-core repulsion = 21815.804698 eV Total energy + Delta-G solvation = -3376.013059 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.79404 -39.64968 -37.70960 -37.01435 -34.75724 -32.87404 -32.19424 -31.57309 -29.70596 -29.09651 -26.38743 -25.85937 -24.33299 -23.28977 -23.07907 -21.91760 -19.98637 -18.91321 -18.16897 -17.51845 -17.25312 -16.96215 -16.68603 -16.34203 -15.96928 -15.64083 -15.50260 -15.16906 -14.72077 -14.55605 -14.12831 -14.09384 -13.90181 -13.73625 -13.41492 -13.08909 -12.88176 -12.70348 -12.54136 -12.41391 -12.39099 -12.07370 -11.96730 -11.78465 -11.62245 -11.36438 -11.24158 -10.85227 -10.66404 -10.53873 -9.64777 -9.33353 -8.97650 -8.16346 -6.23827 0.58865 0.65926 1.39769 1.42828 1.53873 2.39791 2.82707 3.01903 3.13933 3.16555 3.53283 3.77059 3.96618 4.05882 4.13162 4.26910 4.30484 4.33292 4.42929 4.47898 4.52012 4.59560 4.67761 4.72041 4.77170 4.84088 4.87156 4.90633 5.02863 5.10449 5.17742 5.20529 5.26955 5.33113 5.37675 5.67382 5.73474 5.76529 5.78681 5.92572 6.10176 6.26586 6.39681 6.55173 6.88664 6.93378 7.43015 8.93245 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016970 B = 0.006104 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.564025 B = 4585.954840 C = 5323.233791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.958 3.042 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.284 1.284 7 C -0.501 4.501 8 H 0.066 0.934 9 C 0.202 3.798 10 N -0.513 5.513 11 C 0.082 3.918 12 C -0.067 4.067 13 C -0.119 4.119 14 C -0.124 4.124 15 C -0.126 4.126 16 C -0.128 4.128 17 C -0.115 4.115 18 C 0.098 3.902 19 C 0.105 3.895 20 O -0.584 6.584 21 C -0.143 4.143 22 C 0.053 3.947 23 O -0.382 6.382 24 C 0.031 3.969 25 H 0.262 0.738 26 H -0.022 1.022 27 H 0.000 1.000 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.122 0.878 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.134 0.866 34 H 0.105 0.895 35 H 0.048 0.952 36 H 0.046 0.954 37 H 0.394 0.606 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.106 0.894 42 H 0.068 0.932 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.790 -12.813 -1.406 16.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.193 4.193 3 Si 0.783 3.217 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.210 1.210 7 C -0.540 4.540 8 H 0.084 0.916 9 C 0.076 3.924 10 N -0.237 5.237 11 C -0.046 4.046 12 C -0.068 4.068 13 C -0.138 4.138 14 C -0.142 4.142 15 C -0.144 4.144 16 C -0.146 4.146 17 C -0.133 4.133 18 C 0.008 3.992 19 C 0.028 3.972 20 O -0.392 6.392 21 C -0.181 4.181 22 C -0.023 4.023 23 O -0.301 6.301 24 C -0.048 4.048 25 H 0.071 0.929 26 H -0.004 1.004 27 H 0.018 0.982 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.140 0.860 31 H 0.162 0.838 32 H 0.163 0.837 33 H 0.152 0.848 34 H 0.124 0.876 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.243 0.757 38 H 0.114 0.886 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.124 0.876 42 H 0.086 0.914 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.739 -13.318 -0.929 16.525 hybrid contribution -0.779 2.021 -0.522 2.228 sum 8.960 -11.297 -1.451 14.492 Atomic orbital electron populations 1.70087 1.07613 1.27569 1.52182 1.25771 0.95510 1.02618 0.95374 0.85502 0.79222 0.79448 0.77502 1.18617 1.20625 1.21036 1.21426 0.93562 0.90263 1.48740 0.91616 1.19574 0.89872 0.88871 0.94102 1.62185 1.41027 1.05049 1.15475 1.21180 0.94465 0.90802 0.98133 1.19684 0.96425 0.94323 0.96346 1.21211 0.99253 0.93293 1.00018 1.21358 0.94734 1.00357 0.97723 1.21399 0.99836 0.95680 0.97454 1.21343 0.98010 0.94657 1.00568 1.21041 0.95490 0.99512 0.97305 1.22153 0.94528 0.94676 0.87877 1.22021 0.98135 0.94790 0.82291 1.86258 1.85941 1.39224 1.27750 1.23199 0.97406 0.94713 1.02746 1.23431 0.80179 0.99399 0.99312 1.89057 1.23875 1.23012 1.94186 1.23888 0.98996 0.81773 1.00123 0.92900 1.00432 0.98190 0.92042 0.92652 0.85965 0.83810 0.83704 0.84823 0.87645 0.93401 0.93541 0.75670 0.88610 0.90672 0.92172 0.87586 0.91404 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.20 13.29 21.45 0.28 -53.92 16 2 C 0.01 0.28 5.46 84.65 0.46 0.74 16 3 Si 0.96 42.53 29.54 68.60 2.03 44.55 16 4 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.50 -26.48 6.67 25.60 0.17 -26.31 16 8 H 0.07 3.43 6.49 -2.91 -0.02 3.41 16 9 C 0.20 10.19 4.16 85.56 0.36 10.55 16 10 N -0.51 -21.44 4.13 -850.01 -3.51 -24.95 16 11 C 0.08 3.08 4.78 85.56 0.41 3.49 16 12 C -0.07 -2.14 3.07 -19.87 -0.06 -2.21 16 13 C -0.12 -3.21 6.39 22.27 0.14 -3.07 16 14 C -0.12 -2.67 10.05 22.27 0.22 -2.45 16 15 C -0.13 -2.62 10.05 22.27 0.22 -2.40 16 16 C -0.13 -3.16 10.05 22.27 0.22 -2.94 16 17 C -0.11 -3.58 9.08 22.27 0.20 -3.38 16 18 C 0.10 3.72 0.60 4.54 0.00 3.72 16 19 C 0.11 4.07 4.52 71.98 0.33 4.40 16 20 O -0.58 -18.61 12.07 -148.98 -1.80 -20.41 16 21 C -0.14 -4.62 5.38 31.61 0.17 -4.45 16 22 C 0.05 1.52 6.40 72.48 0.46 1.99 16 23 O -0.38 -12.94 9.25 -148.98 -1.38 -14.32 16 24 C 0.03 1.15 5.45 72.48 0.40 1.55 16 25 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 26 H -0.02 -1.20 6.29 -2.39 -0.02 -1.22 16 27 H 0.00 0.00 7.39 -2.38 -0.02 -0.02 16 28 H 0.06 2.45 7.41 -2.39 -0.02 2.43 16 29 H 0.06 2.10 4.72 -2.39 -0.01 2.09 16 30 H 0.12 3.32 6.57 -2.91 -0.02 3.30 16 31 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 32 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 33 H 0.13 2.74 8.06 -2.91 -0.02 2.71 16 34 H 0.11 3.67 8.06 -2.91 -0.02 3.65 16 35 H 0.05 2.16 5.94 -2.39 -0.01 2.15 16 36 H 0.05 1.87 7.00 -2.39 -0.02 1.86 16 37 H 0.39 9.06 9.12 -74.06 -0.68 8.38 16 38 H 0.10 3.15 3.86 -2.39 -0.01 3.14 16 39 H 0.07 2.39 7.36 -2.39 -0.02 2.37 16 40 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.11 2.55 6.86 -2.39 -0.02 2.54 16 42 H 0.07 2.80 6.18 -2.39 -0.01 2.78 16 43 H 0.06 2.39 7.26 -2.38 -0.02 2.38 16 Total: -1.00 -61.70 322.81 -0.30 -62.01 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 0.36 Total: 27.80 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: 3.71 Total: -20.77 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -3.22 Total: -78.87 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -3.18 Total: -34.73 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -61.70 -0.30 -62.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599397432.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.880 kcal (2) G-P(sol) polarization free energy of solvation -61.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds